Prerequisites, performance and profits of transcriptional profiling the abiotic stress response
Kilian J, Peschke F, Berendzen KW, Harter K, Wanke D (2012)
Biochimica et biophysica acta 1819(2): 166-175.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
Kilian, Joachim;
Peschke, FlorianUniBi;
Berendzen, Kenneth W;
Harter, Klaus;
Wanke, Dierk
Abstract / Bemerkung
During the last decade, microarrays became a routine tool for the analysis of transcripts in the model plant Arabidopsis thaliana and the crop plant species rice, poplar or barley. The overwhelming amount of data generated by gene expression studies is a valuable resource for every scientist. Here, we summarize the most important findings about the abiotic stress responses in plants. Interestingly, conserved patterns of gene expression responses have been found that are common between different abiotic stresses or that are conserved between different plant species. However, the individual histories of each plant affect the inter-comparability between experiments already before the onset of the actual stress treatment. This review outlines multiple aspects of microarray technology and highlights some of the benefits, limitations and also pitfalls of the technique. This article is part of a Special Issue entitled: Plant gene regulation in response to abiotic stress.
Stichworte
Plant Proteins/metabolism;
Plants/genetics;
Stress;
Physiological;
Plant Proteins/genetics;
Plant Physiological Phenomena;
Gene Expression Profiling;
Plant;
Gene Expression Regulation
Erscheinungsjahr
2012
Zeitschriftentitel
Biochimica et biophysica acta
Band
1819
Ausgabe
2
Seite(n)
166-175
ISSN
1874-9399
Page URI
https://pub.uni-bielefeld.de/record/2537811
Zitieren
Kilian J, Peschke F, Berendzen KW, Harter K, Wanke D. Prerequisites, performance and profits of transcriptional profiling the abiotic stress response. Biochimica et biophysica acta. 2012;1819(2):166-175.
Kilian, J., Peschke, F., Berendzen, K. W., Harter, K., & Wanke, D. (2012). Prerequisites, performance and profits of transcriptional profiling the abiotic stress response. Biochimica et biophysica acta, 1819(2), 166-175. doi:10.1016/j.bbagrm.2011.09.005
Kilian, Joachim, Peschke, Florian, Berendzen, Kenneth W, Harter, Klaus, and Wanke, Dierk. 2012. “Prerequisites, performance and profits of transcriptional profiling the abiotic stress response”. Biochimica et biophysica acta 1819 (2): 166-175.
Kilian, J., Peschke, F., Berendzen, K. W., Harter, K., and Wanke, D. (2012). Prerequisites, performance and profits of transcriptional profiling the abiotic stress response. Biochimica et biophysica acta 1819, 166-175.
Kilian, J., et al., 2012. Prerequisites, performance and profits of transcriptional profiling the abiotic stress response. Biochimica et biophysica acta, 1819(2), p 166-175.
J. Kilian, et al., “Prerequisites, performance and profits of transcriptional profiling the abiotic stress response”, Biochimica et biophysica acta, vol. 1819, 2012, pp. 166-175.
Kilian, J., Peschke, F., Berendzen, K.W., Harter, K., Wanke, D.: Prerequisites, performance and profits of transcriptional profiling the abiotic stress response. Biochimica et biophysica acta. 1819, 166-175 (2012).
Kilian, Joachim, Peschke, Florian, Berendzen, Kenneth W, Harter, Klaus, and Wanke, Dierk. “Prerequisites, performance and profits of transcriptional profiling the abiotic stress response”. Biochimica et biophysica acta 1819.2 (2012): 166-175.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
16 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
Phylogenetic Analyses and GAGA-Motif Binding Studies of BBR/BPC Proteins Lend to Clues in GAGA-Motif Recognition and a Regulatory Role in Brassinosteroid Signaling.
Theune ML, Bloss U, Brand LH, Ladwig F, Wanke D., Front Plant Sci 10(), 2019
PMID: 31057577
Theune ML, Bloss U, Brand LH, Ladwig F, Wanke D., Front Plant Sci 10(), 2019
PMID: 31057577
Function of the ERFL1a Transcription Factor in Wheat Responses to Water Deficiency.
Gao T, Li GZ, Wang CR, Dong J, Yuan SS, Wang YH, Kang GZ., Int J Mol Sci 19(5), 2018
PMID: 29762476
Gao T, Li GZ, Wang CR, Dong J, Yuan SS, Wang YH, Kang GZ., Int J Mol Sci 19(5), 2018
PMID: 29762476
A Bayesian hierarchical model for identifying significant polygenic effects while controlling for confounding and repeated measures.
McMahan C, Baurley J, Bridges W, Joyner C, Kacamarga MF, Lund R, Pardamean C, Pardamean B., Stat Appl Genet Mol Biol 16(5-6), 2017
PMID: 29140792
McMahan C, Baurley J, Bridges W, Joyner C, Kacamarga MF, Lund R, Pardamean C, Pardamean B., Stat Appl Genet Mol Biol 16(5-6), 2017
PMID: 29140792
Functional marker development is challenged by the ubiquity of endophytes-a practical perspective.
Arnholdt-Schmitt B, Valadas V, Döring M., Brief Funct Genomics 15(1), 2016
PMID: 25526729
Arnholdt-Schmitt B, Valadas V, Döring M., Brief Funct Genomics 15(1), 2016
PMID: 25526729
SUMO proteases ULP1c and ULP1d are required for development and osmotic stress responses in Arabidopsis thaliana.
Castro PH, Couto D, Freitas S, Verde N, Macho AP, Huguet S, Botella MA, Ruiz-Albert J, Tavares RM, Bejarano ER, Azevedo H., Plant Mol Biol 92(1-2), 2016
PMID: 27325215
Castro PH, Couto D, Freitas S, Verde N, Macho AP, Huguet S, Botella MA, Ruiz-Albert J, Tavares RM, Bejarano ER, Azevedo H., Plant Mol Biol 92(1-2), 2016
PMID: 27325215
Tobacco drought stress responses reveal new targets for Solanaceae crop improvement.
Rabara RC, Tripathi P, Reese RN, Rushton DL, Alexander D, Timko MP, Shen QJ, Rushton PJ., BMC Genomics 16(), 2015
PMID: 26123791
Rabara RC, Tripathi P, Reese RN, Rushton DL, Alexander D, Timko MP, Shen QJ, Rushton PJ., BMC Genomics 16(), 2015
PMID: 26123791
Phenotypic plasticity and epigenetic marking: an assessment of evidence for genetic accommodation.
Schlichting CD, Wund MA., Evolution 68(3), 2014
PMID: 24410266
Schlichting CD, Wund MA., Evolution 68(3), 2014
PMID: 24410266
Predisposition in plant disease: exploiting the nexus in abiotic and biotic stress perception and response.
Bostock RM, Pye MF, Roubtsova TV., Annu Rev Phytopathol 52(), 2014
PMID: 25001451
Bostock RM, Pye MF, Roubtsova TV., Annu Rev Phytopathol 52(), 2014
PMID: 25001451
To grow or not to grow: a stressful decision for plants.
Dolferus R., Plant Sci 229(), 2014
PMID: 25443851
Dolferus R., Plant Sci 229(), 2014
PMID: 25443851
STIFDB2: an updated version of plant stress-responsive transcription factor database with additional stress signals, stress-responsive transcription factor binding sites and stress-responsive genes in Arabidopsis and rice.
Naika M, Shameer K, Mathew OK, Gowda R, Sowdhamini R., Plant Cell Physiol 54(2), 2013
PMID: 23314754
Naika M, Shameer K, Mathew OK, Gowda R, Sowdhamini R., Plant Cell Physiol 54(2), 2013
PMID: 23314754
Transcriptome responses to combinations of stresses in Arabidopsis.
Rasmussen S, Barah P, Suarez-Rodriguez MC, Bressendorff S, Friis P, Costantino P, Bones AM, Nielsen HB, Mundy J., Plant Physiol 161(4), 2013
PMID: 23447525
Rasmussen S, Barah P, Suarez-Rodriguez MC, Bressendorff S, Friis P, Costantino P, Bones AM, Nielsen HB, Mundy J., Plant Physiol 161(4), 2013
PMID: 23447525
Structure, function and networks of transcription factors involved in abiotic stress responses.
Lindemose S, O'Shea C, Jensen MK, Skriver K., Int J Mol Sci 14(3), 2013
PMID: 23485989
Lindemose S, O'Shea C, Jensen MK, Skriver K., Int J Mol Sci 14(3), 2013
PMID: 23485989
Plant core environmental stress response genes are systemically coordinated during abiotic stresses.
Hahn A, Kilian J, Mohrholz A, Ladwig F, Peschke F, Dautel R, Harter K, Berendzen KW, Wanke D., Int J Mol Sci 14(4), 2013
PMID: 23567274
Hahn A, Kilian J, Mohrholz A, Ladwig F, Peschke F, Dautel R, Harter K, Berendzen KW, Wanke D., Int J Mol Sci 14(4), 2013
PMID: 23567274
Proteomic analysis of temperature stress-responsive proteins in Arabidopsis thaliana rosette leaves.
Rocco M, Arena S, Renzone G, Scippa GS, Lomaglio T, Verrillo F, Scaloni A, Marra M., Mol Biosyst 9(6), 2013
PMID: 23624559
Rocco M, Arena S, Renzone G, Scippa GS, Lomaglio T, Verrillo F, Scaloni A, Marra M., Mol Biosyst 9(6), 2013
PMID: 23624559
Microarray analysis of transcriptional responses to abscisic acid and salt stress in Arabidopsis thaliana.
Liu Y, Ji X, Zheng L, Nie X, Wang Y., Int J Mol Sci 14(5), 2013
PMID: 23665901
Liu Y, Ji X, Zheng L, Nie X, Wang Y., Int J Mol Sci 14(5), 2013
PMID: 23665901
Elucidating the evolutionary conserved DNA-binding specificities of WRKY transcription factors by molecular dynamics and in vitro binding assays.
Brand LH, Fischer NM, Harter K, Kohlbacher O, Wanke D., Nucleic Acids Res 41(21), 2013
PMID: 23975197
Brand LH, Fischer NM, Harter K, Kohlbacher O, Wanke D., Nucleic Acids Res 41(21), 2013
PMID: 23975197
References
Daten bereitgestellt von Europe PubMed Central.
Export
Markieren/ Markierung löschen
Markierte Publikationen
Web of Science
Dieser Datensatz im Web of Science®Quellen
PMID: 22001611
PubMed | Europe PMC
Suchen in