On the Lubensky-Nelson Model of Polymer Translocation through Nanopores
Reimann P, Meyer A, Getfert S (2012)
Biophysical Journal 103(5): 889-897.
Zeitschriftenaufsatz
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Autor*in
Reimann, PeterUniBi;
Meyer, Andreas;
Getfert, SebastianUniBi
Abstract / Bemerkung
We revisit the one-dimensional stochastic model of an earlier study by D. K. Lubensky and D. R. Nelson for the electrically driven translocation of polynucleotides through alpha-hemolysin pores. We show that the model correctly describes two further important properties of the experimentally observed translocation time distributions, namely their spread (width) and their exponential The resulting overall agreement between theoretical and experimental translocation time distributions is thus very good.
Erscheinungsjahr
2012
Zeitschriftentitel
Biophysical Journal
Band
103
Ausgabe
5
Seite(n)
889-897
ISSN
0006-3495
Page URI
https://pub.uni-bielefeld.de/record/2536176
Zitieren
Reimann P, Meyer A, Getfert S. On the Lubensky-Nelson Model of Polymer Translocation through Nanopores. Biophysical Journal. 2012;103(5):889-897.
Reimann, P., Meyer, A., & Getfert, S. (2012). On the Lubensky-Nelson Model of Polymer Translocation through Nanopores. Biophysical Journal, 103(5), 889-897. doi:10.1016/j.bpj.2012.07.036
Reimann, Peter, Meyer, Andreas, and Getfert, Sebastian. 2012. “On the Lubensky-Nelson Model of Polymer Translocation through Nanopores”. Biophysical Journal 103 (5): 889-897.
Reimann, P., Meyer, A., and Getfert, S. (2012). On the Lubensky-Nelson Model of Polymer Translocation through Nanopores. Biophysical Journal 103, 889-897.
Reimann, P., Meyer, A., & Getfert, S., 2012. On the Lubensky-Nelson Model of Polymer Translocation through Nanopores. Biophysical Journal, 103(5), p 889-897.
P. Reimann, A. Meyer, and S. Getfert, “On the Lubensky-Nelson Model of Polymer Translocation through Nanopores”, Biophysical Journal, vol. 103, 2012, pp. 889-897.
Reimann, P., Meyer, A., Getfert, S.: On the Lubensky-Nelson Model of Polymer Translocation through Nanopores. Biophysical Journal. 103, 889-897 (2012).
Reimann, Peter, Meyer, Andreas, and Getfert, Sebastian. “On the Lubensky-Nelson Model of Polymer Translocation through Nanopores”. Biophysical Journal 103.5 (2012): 889-897.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
4 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
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PMID: 29542143
Das PK., Electrophoresis 39(11), 2018
PMID: 29542143
High-speed detection of DNA translocation in nanopipettes.
Fraccari RL, Ciccarella P, Bahrami A, Carminati M, Ferrari G, Albrecht T., Nanoscale 8(14), 2016
PMID: 26985713
Fraccari RL, Ciccarella P, Bahrami A, Carminati M, Ferrari G, Albrecht T., Nanoscale 8(14), 2016
PMID: 26985713
Computational studies of DNA sequencing with solid-state nanopores: key issues and future prospects.
Liang L, Wang Q, Agren H, Tu Y., Front Chem 2(), 2014
PMID: 24790974
Liang L, Wang Q, Agren H, Tu Y., Front Chem 2(), 2014
PMID: 24790974
On the distribution of DNA translocation times in solid-state nanopores: an analysis using Schrödinger's first-passage-time theory.
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PMID: 23963318
Ling DY, Ling XS., J Phys Condens Matter 25(37), 2013
PMID: 23963318
45 References
Daten bereitgestellt von Europe PubMed Central.
Dynamics of polynucleotide transport through nanometer-scale pores
Meller A.., 2003
Meller A.., 2003
Nanopore sensors for nucleic acid analysis.
Venkatesan BM, Bashir R., Nat Nanotechnol 6(10), 2011
PMID: 21926981
Venkatesan BM, Bashir R., Nat Nanotechnol 6(10), 2011
PMID: 21926981
Driven polymer translocation through a narrow pore.
Lubensky DK, Nelson DR., Biophys. J. 77(4), 1999
PMID: 10512806
Lubensky DK, Nelson DR., Biophys. J. 77(4), 1999
PMID: 10512806
Dynamics of molecular motors and polymer translocation with sequence heterogeneity.
Kafri Y, Lubensky DK, Nelson DR., Biophys. J. 86(6), 2004
PMID: 15189841
Kafri Y, Lubensky DK, Nelson DR., Biophys. J. 86(6), 2004
PMID: 15189841
First passage times and asymmetry of DNA translocation
Lua R.C., Grosberg A.Y.., 2005
Lua R.C., Grosberg A.Y.., 2005
Orientation-dependent interactions of DNA with an α-hemolysin channel
Wanunu M., Chakrabarti B., Meller A.., 2008
Wanunu M., Chakrabarti B., Meller A.., 2008
DNA translocation through an array of kinked nanopores.
Chen Z, Jiang Y, Dunphy DR, Adams DP, Hodges C, Liu N, Zhang N, Xomeritakis G, Jin X, Aluru NR, Gaik SJ, Hillhouse HW, Brinker CJ., Nat Mater 9(8), 2010
PMID: 20651807
Chen Z, Jiang Y, Dunphy DR, Adams DP, Hodges C, Liu N, Zhang N, Xomeritakis G, Jin X, Aluru NR, Gaik SJ, Hillhouse HW, Brinker CJ., Nat Mater 9(8), 2010
PMID: 20651807
The distribution of DNA translocation times in solid-state nanopores.
Li J, Talaga DS., J Phys Condens Matter 22(45), 2010
PMID: 21339615
Li J, Talaga DS., J Phys Condens Matter 22(45), 2010
PMID: 21339615
Origins and consequences of velocity fluctuations during DNA passage through a nanopore.
Lu B, Albertorio F, Hoogerheide DP, Golovchenko JA., Biophys. J. 101(1), 2011
PMID: 21723816
Lu B, Albertorio F, Hoogerheide DP, Golovchenko JA., Biophys. J. 101(1), 2011
PMID: 21723816
Theory of capture rate in polymer translocation.
Muthukumar M., J Chem Phys 132(19), 2010
PMID: 20499989
Muthukumar M., J Chem Phys 132(19), 2010
PMID: 20499989
Polymer translocation through alpha-hemolysin pore with tunable polymer-pore electrostatic interaction.
Wong CT, Muthukumar M., J Chem Phys 133(4), 2010
PMID: 20687689
Wong CT, Muthukumar M., J Chem Phys 133(4), 2010
PMID: 20687689
Characterization of individual polynucleotide molecules using a membrane channel.
Kasianowicz JJ, Brandin E, Branton D, Deamer DW, Deamer DW., Proc. Natl. Acad. Sci. U.S.A. 93(24), 1996
PMID: 8943010
Kasianowicz JJ, Brandin E, Branton D, Deamer DW, Deamer DW., Proc. Natl. Acad. Sci. U.S.A. 93(24), 1996
PMID: 8943010
Rapid nanopore discrimination between single polynucleotide molecules.
Meller A, Nivon L, Brandin E, Golovchenko J, Branton D., Proc. Natl. Acad. Sci. U.S.A. 97(3), 2000
PMID: 10655487
Meller A, Nivon L, Brandin E, Golovchenko J, Branton D., Proc. Natl. Acad. Sci. U.S.A. 97(3), 2000
PMID: 10655487
Voltage-driven DNA translocations through a nanopore.
Meller A, Nivon L, Branton D., Phys. Rev. Lett. 86(15), 2001
PMID: 11327989
Meller A, Nivon L, Branton D., Phys. Rev. Lett. 86(15), 2001
PMID: 11327989
Single molecule measurements of DNA transport through a nanopore.
Meller A, Branton D., Electrophoresis 23(16), 2002
PMID: 12210161
Meller A, Branton D., Electrophoresis 23(16), 2002
PMID: 12210161
Ionic current blockades from DNA and RNA molecules in the alpha-hemolysin nanopore.
Butler TZ, Gundlach JH, Troll M., Biophys. J. 93(9), 2007
PMID: 17675346
Butler TZ, Gundlach JH, Troll M., Biophys. J. 93(9), 2007
PMID: 17675346
Characterization of nucleic acids by nanopore analysis.
Deamer DW, Branton D., Acc. Chem. Res. 35(10), 2002
PMID: 12379134
Deamer DW, Branton D., Acc. Chem. Res. 35(10), 2002
PMID: 12379134
Single-polymer dynamics under constraints: scaling theory and computer experiment.
Milchev A., J Phys Condens Matter 23(10), 2011
PMID: 21335636
Milchev A., J Phys Condens Matter 23(10), 2011
PMID: 21335636
Probing single DNA molecule transport using fabricated nanopores
Chen P., Gu J., Branton D.., 2004
Chen P., Gu J., Branton D.., 2004
Fast DNA translocation through a solid-state nanopore.
Storm AJ, Storm C, Chen J, Zandbergen H, Joanny JF, Dekker C., Nano Lett. 5(7), 2005
PMID: 16178209
Storm AJ, Storm C, Chen J, Zandbergen H, Joanny JF, Dekker C., Nano Lett. 5(7), 2005
PMID: 16178209
Polymer translocation through a hole
Muthukumar M.., 1999
Muthukumar M.., 1999
Polymer Translocation through a Pore in a Membrane.
Sung W, Park PJ., Phys. Rev. Lett. 77(4), 1996
PMID: 10062901
Sung W, Park PJ., Phys. Rev. Lett. 77(4), 1996
PMID: 10062901
Risken H.., 1984
Brownian motors: noisy transport far from equilibrium
Reimann P.., 2002
Reimann P.., 2002
DNA in nanopores: counterion condensation and coion depletion.
Rabin Y, Tanaka M., Phys. Rev. Lett. 94(14), 2005
PMID: 15904117
Rabin Y, Tanaka M., Phys. Rev. Lett. 94(14), 2005
PMID: 15904117
Effective charge and free energy of DNA inside an ion channel
Zhang J., Shklovskii B.I.., 2007
Zhang J., Shklovskii B.I.., 2007
Effect of salt concentration on the electrophoretic speed of a polyelectrolyte through a nanopore.
Ghosal S., Phys. Rev. Lett. 98(23), 2007
PMID: 17677940
Ghosal S., Phys. Rev. Lett. 98(23), 2007
PMID: 17677940
Driven DNA transport into an asymmetric nanometer-scale pore.
Henrickson SE, Misakian M, Robertson B, Kasianowicz JJ., Phys. Rev. Lett. 85(14), 2000
PMID: 11006002
Henrickson SE, Misakian M, Robertson B, Kasianowicz JJ., Phys. Rev. Lett. 85(14), 2000
PMID: 11006002
Sequence dependence of DNA translocation through a nanopore.
Luo K, Ala-Nissila T, Ying SC, Bhattacharya A., Phys. Rev. Lett. 100(5), 2008
PMID: 18352434
Luo K, Ala-Nissila T, Ying SC, Bhattacharya A., Phys. Rev. Lett. 100(5), 2008
PMID: 18352434
Dynamics of polyelectrolyte transport through a protein channel as a function of applied voltage.
Brun L, Pastoriza-Gallego M, Oukhaled G, Mathe J, Bacri L, Auvray L, Pelta J., Phys. Rev. Lett. 100(15), 2008
PMID: 18518160
Brun L, Pastoriza-Gallego M, Oukhaled G, Mathe J, Bacri L, Auvray L, Pelta J., Phys. Rev. Lett. 100(15), 2008
PMID: 18518160
AUTHOR UNKNOWN, 0
Giant acceleration of free diffusion by use of tilted periodic potentials.
Reimann P, Van den Broeck C, Linke H, Hanggi P, Rubi JM, Perez-Madrid A., Phys. Rev. Lett. 87(1), 2001
PMID: 11461454
Reimann P, Van den Broeck C, Linke H, Hanggi P, Rubi JM, Perez-Madrid A., Phys. Rev. Lett. 87(1), 2001
PMID: 11461454
Diffusion in tilted periodic potentials: enhancement, universality, and scaling
Reimann P., Van C., Pérez-Madrid A.., 2002
Reimann P., Van C., Pérez-Madrid A.., 2002
Nonlinear response theory: transport coefficients for driving fields of arbitrary magnitude
Parris P.E., Kus M., Kenkre V.M.., 1997
Parris P.E., Kus M., Kenkre V.M.., 1997
Optimal diffusive transport in a tilted periodic potential
Lindner B., Kostur M., Schimansky-Geier L.., 2001
Lindner B., Kostur M., Schimansky-Geier L.., 2001
Dynamics of DNA molecules in a membrane channel probed by active control techniques.
Bates M, Burns M, Meller A., Biophys. J. 84(4), 2003
PMID: 12668445
Bates M, Burns M, Meller A., Biophys. J. 84(4), 2003
PMID: 12668445
Enhanced translocation of single DNA molecules through alpha-hemolysin nanopores by manipulation of internal charge.
Maglia G, Restrepo MR, Mikhailova E, Bayley H., Proc. Natl. Acad. Sci. U.S.A. 105(50), 2008
PMID: 19060213
Maglia G, Restrepo MR, Mikhailova E, Bayley H., Proc. Natl. Acad. Sci. U.S.A. 105(50), 2008
PMID: 19060213
Microsecond time-scale discrimination among polycytidylic acid, polyadenylic acid, and polyuridylic acid as homopolymers or as segments within single RNA molecules.
Akeson M, Branton D, Kasianowicz JJ, Brandin E, Deamer DW., Biophys. J. 77(6), 1999
PMID: 10585944
Akeson M, Branton D, Kasianowicz JJ, Brandin E, Deamer DW., Biophys. J. 77(6), 1999
PMID: 10585944
DNA heterogeneity and phosphorylation unveiled by single-molecule electrophoresis.
Wang H, Dunning JE, Huang AP, Nyamwanda JA, Branton D., Proc. Natl. Acad. Sci. U.S.A. 101(37), 2004
PMID: 15342914
Wang H, Dunning JE, Huang AP, Nyamwanda JA, Branton D., Proc. Natl. Acad. Sci. U.S.A. 101(37), 2004
PMID: 15342914
Orientation discrimination of single-stranded DNA inside the alpha-hemolysin membrane channel.
Mathe J, Aksimentiev A, Nelson DR, Schulten K, Meller A., Proc. Natl. Acad. Sci. U.S.A. 102(35), 2005
PMID: 16113083
Mathe J, Aksimentiev A, Nelson DR, Schulten K, Meller A., Proc. Natl. Acad. Sci. U.S.A. 102(35), 2005
PMID: 16113083
Determination of RNA orientation during translocation through a biological nanopore.
Butler TZ, Gundlach JH, Troll MA., Biophys. J. 90(1), 2005
PMID: 16214857
Butler TZ, Gundlach JH, Troll MA., Biophys. J. 90(1), 2005
PMID: 16214857
Nucleotide identification and orientation discrimination of DNA homopolymers immobilized in a protein nanopore.
Purnell RF, Mehta KK, Schmidt JJ., Nano Lett. 8(9), 2008
PMID: 18698831
Purnell RF, Mehta KK, Schmidt JJ., Nano Lett. 8(9), 2008
PMID: 18698831
DNA translocation and unzipping through a nanopore: some geometrical effects.
Muzard J, Martinho M, Mathe J, Bockelmann U, Viasnoff V., Biophys. J. 98(10), 2010
PMID: 20483325
Muzard J, Martinho M, Mathe J, Bockelmann U, Viasnoff V., Biophys. J. 98(10), 2010
PMID: 20483325
Deciphering ionic current signatures of DNA transport through a nanopore.
Aksimentiev A., Nanoscale 2(4), 2010
PMID: 20644747
Aksimentiev A., Nanoscale 2(4), 2010
PMID: 20644747
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