Time-Course Global Expression Profiles of Chlamydomonas reinhardtii during Photo-Biological H2 Production

Nguyen AV, Toepel J, Burgess S, Uhmeyer A, Blifernez O, Doebbe A, Hankamer B, Nixon P, Wobbe L, Kruse O (2011)
PLoS ONE 6(12): e29364.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
DOI
Autor*in
Nguyen, Anh VuUniBi; Toepel, Joerg; Burgess, Steven; Uhmeyer, AndreasUniBi; Blifernez, OlgaUniBi ; Doebbe, AnjaUniBi; Hankamer, Ben; Nixon, Peter; Wobbe, LutzUniBi ; Kruse, OlafUniBi
Einrichtung
Centrum für Biotechnologie > Institut für Biochemie und Biotechnik
Fakultät für Biologie > Algenbiotechnologie
Centrum für Biotechnologie > Arbeitsgruppe O. Kruse
Erscheinungsjahr
2011
Zeitschriftentitel
PLoS ONE
Band
6
Ausgabe
12
Art.-Nr.
e29364
ISSN
1932-6203
eISSN
1932-6203
Page URI
https://pub.uni-bielefeld.de/record/2475980

Zitieren

Nguyen AV, Toepel J, Burgess S, et al. Time-Course Global Expression Profiles of Chlamydomonas reinhardtii during Photo-Biological H2 Production. PLoS ONE. 2011;6(12): e29364.
Nguyen, A. V., Toepel, J., Burgess, S., Uhmeyer, A., Blifernez, O., Doebbe, A., Hankamer, B., et al. (2011). Time-Course Global Expression Profiles of Chlamydomonas reinhardtii during Photo-Biological H2 Production. PLoS ONE, 6(12), e29364. doi:10.1371/journal.pone.0029364
Nguyen, Anh Vu, Toepel, Joerg, Burgess, Steven, Uhmeyer, Andreas, Blifernez, Olga, Doebbe, Anja, Hankamer, Ben, Nixon, Peter, Wobbe, Lutz, and Kruse, Olaf. 2011. “Time-Course Global Expression Profiles of Chlamydomonas reinhardtii during Photo-Biological H2 Production”. PLoS ONE 6 (12): e29364.
Nguyen, A. V., Toepel, J., Burgess, S., Uhmeyer, A., Blifernez, O., Doebbe, A., Hankamer, B., Nixon, P., Wobbe, L., and Kruse, O. (2011). Time-Course Global Expression Profiles of Chlamydomonas reinhardtii during Photo-Biological H2 Production. PLoS ONE 6:e29364.
Nguyen, A.V., et al., 2011. Time-Course Global Expression Profiles of Chlamydomonas reinhardtii during Photo-Biological H2 Production. PLoS ONE, 6(12): e29364.
A.V. Nguyen, et al., “Time-Course Global Expression Profiles of Chlamydomonas reinhardtii during Photo-Biological H2 Production”, PLoS ONE, vol. 6, 2011, : e29364.
Nguyen, A.V., Toepel, J., Burgess, S., Uhmeyer, A., Blifernez, O., Doebbe, A., Hankamer, B., Nixon, P., Wobbe, L., Kruse, O.: Time-Course Global Expression Profiles of Chlamydomonas reinhardtii during Photo-Biological H2 Production. PLoS ONE. 6, : e29364 (2011).
Nguyen, Anh Vu, Toepel, Joerg, Burgess, Steven, Uhmeyer, Andreas, Blifernez, Olga, Doebbe, Anja, Hankamer, Ben, Nixon, Peter, Wobbe, Lutz, and Kruse, Olaf. “Time-Course Global Expression Profiles of Chlamydomonas reinhardtii during Photo-Biological H2 Production”. PLoS ONE 6.12 (2011): e29364.

13 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

The mechanism of photosystem-II inactivation during sulphur deprivation-induced H2 production in Chlamydomonas reinhardtii.
Nagy V, Vidal-Meireles A, Podmaniczki A, Szentmihályi K, Rákhely G, Zsigmond L, Kovács L, Tóth SZ., Plant J 94(3), 2018
PMID: 29474754
Impaired Mitochondrial Transcription Termination Disrupts the Stromal Redox Poise in Chlamydomonas.
Uhmeyer A, Cecchin M, Ballottari M, Wobbe L., Plant Physiol 174(3), 2017
PMID: 28500267
Knock-Down of the IFR1 Protein Perturbs the Homeostasis of Reactive Electrophile Species and Boosts Photosynthetic Hydrogen Production in Chlamydomonas reinhardtii.
Venkanna D, Südfeld C, Baier T, Homburg SV, Patel AV, Wobbe L, Kruse O., Front Plant Sci 8(), 2017
PMID: 28824682
Ascorbate accumulation during sulphur deprivation and its effects on photosystem II activity and H2 production of the green alga Chlamydomonas reinhardtii.
Nagy V, Vidal-Meireles A, Tengölics R, Rákhely G, Garab G, Kovács L, Tóth SZ., Plant Cell Environ 39(7), 2016
PMID: 26714836
Multi-omics Frontiers in Algal Research: Techniques and Progress to Explore Biofuels in the Postgenomics World.
Rai V, Karthikaichamy A, Das D, Noronha S, Wangikar PP, Srivastava S., OMICS 20(7), 2016
PMID: 27315140
Improving the sunlight-to-biomass conversion efficiency in microalgal biofactories.
Wobbe L, Remacle C., J Biotechnol 201(), 2015
PMID: 25160918
Respiratory-deficient mutants of the unicellular green alga Chlamydomonas: a review.
Salinas T, Larosa V, Cardol P, Maréchal-Drouard L, Remacle C., Biochimie 100(), 2014
PMID: 24139906
Lack of isocitrate lyase in Chlamydomonas leads to changes in carbon metabolism and in the response to oxidative stress under mixotrophic growth.
Plancke C, Vigeolas H, Höhner R, Roberty S, Emonds-Alt B, Larosa V, Willamme R, Duby F, Onga Dhali D, Thonart P, Hiligsmann S, Franck F, Eppe G, Cardol P, Hippler M, Remacle C., Plant J 77(3), 2014
PMID: 24286363
The effect on growth of Chlamydomonas reinhardtii of flue gas from a power plant based on waste combustion.
Mortensen LM, Gislerød HR., AMB Express 4(), 2014
PMID: 25401062
Antimycin A effect on the electron transport in chloroplasts of two Chlamydomonas reinhardtii strains.
Antal TK, Kukarskikh GP, Bulychev AA, Tyystjärvi E, Krendeleva T., Planta 237(5), 2013
PMID: 23354456
New insights into Chlamydomonas reinhardtii hydrogen production processes by combined microarray/RNA-seq transcriptomics.
Toepel J, Illmer-Kephalides M, Jaenicke S, Straube J, May P, Goesmann A, Kruse O., Plant Biotechnol J 11(6), 2013
PMID: 23551401
Systemic cold stress adaptation of Chlamydomonas reinhardtii.
Valledor L, Furuhashi T, Hanak AM, Weckwerth W., Mol Cell Proteomics 12(8), 2013
PMID: 23564937
Suppression subtractive hybridization reveals transcript profiling of Chlorella under heterotrophy to photoautotrophy transition.
Fan J, Cui Y, Huang J, Wang W, Yin W, Hu Z, Li Y., PLoS One 7(11), 2012
PMID: 23209737

56 References

Daten bereitgestellt von Europe PubMed Central.

Sustained photobiological hydrogen gas production upon reversible inactivation of oxygen evolution in the green alga Chlamydomonas reinhardtii.
Melis A, Zhang L, Forestier M, Ghirardi ML, Seibert M., Plant Physiol. 122(1), 2000
PMID: 10631256
Microalgal hydrogen production.
Kruse O, Hankamer B., Curr. Opin. Biotechnol. 21(3), 2010
PMID: 20399635
Hydrogenases and hydrogen photoproduction in oxygenic photosynthetic organisms.
Ghirardi ML, Posewitz MC, Maness PC, Dubini A, Yu J, Seibert M., Annu Rev Plant Biol 58(), 2007
PMID: 17150028
Perspectives and advances of biological H2 production in microorganisms.
Rupprecht J, Hankamer B, Mussgnug JH, Ananyev G, Dismukes C, Kruse O., Appl. Microbiol. Biotechnol. 72(3), 2006
PMID: 16896600
Differential regulation of the Fe-hydrogenase during anaerobic adaptation in the green alga Chlamydomonas reinhardtii.
Happe T, Kaminski A., Eur. J. Biochem. 269(3), 2002
PMID: 11846805
Transcriptome for photobiological hydrogen production induced by sulfur deprivation in the green alga Chlamydomonas reinhardtii.
Nguyen AV, Thomas-Hall SR, Malnoe A, Timmins M, Mussgnug JH, Rupprecht J, Kruse O, Hankamer B, Schenk PM., Eukaryotic Cell 7(11), 2008
PMID: 18708561
Proteomic analysis of hydrogen photoproduction in sulfur-deprived Chlamydomonas cells.
Chen M, Zhao L, Sun YL, Cui SX, Zhang LF, Yang B, Wang J, Kuang TY, Huang F., J. Proteome Res. 9(8), 2010
PMID: 20509623
Biochemical and morphological characterization of sulfur-deprived and H2-producing Chlamydomonas reinhardtii (green alga).
Zhang L, Happe T, Melis A., Planta 214(4), 2002
PMID: 11925039
RNA-seq analysis of sulfur-deprived Chlamydomonas cells reveals aspects of acclimation critical for cell survival.
Gonzalez-Ballester D, Casero D, Cokus S, Pellegrini M, Merchant SS, Grossman AR., Plant Cell 22(6), 2010
PMID: 20587772
The metabolome of Chlamydomonas reinhardtii following induction of anaerobic H2 production by sulfur depletion.
Matthew T, Zhou W, Rupprecht J, Lim L, Thomas-Hall SR, Doebbe A, Kruse O, Hankamer B, Marx UC, Smith SM, Schenk PM., J. Biol. Chem. 284(35), 2009
PMID: 19478077
The interplay of proton, electron, and metabolite supply for photosynthetic H2 production in Chlamydomonas reinhardtii.
Doebbe A, Keck M, La Russa M, Mussgnug JH, Hankamer B, Tekce E, Niehaus K, Kruse O., J. Biol. Chem. 285(39), 2010
PMID: 20581114
A comparison of hydrogen photoproduction by sulfur-deprived Chlamydomonas reinhardtii under different growth conditions.
Kosourov S, Patrusheva E, Ghirardi ML, Seibert M, Tsygankov A., J. Biotechnol. 128(4), 2007
PMID: 17275940
Hydrogen production in Chlamydomonas: photosystem II-dependent and -independent pathways differ in their requirement for starch metabolism.
Chochois V, Dauvillee D, Beyly A, Tolleter D, Cuine S, Timpano H, Ball S, Cournac L, Peltier G., Plant Physiol. 151(2), 2009
PMID: 19700559
Autotrophic and mixotrophic hydrogen photoproduction in sulfur-deprived chlamydomonas cells.
Fouchard S, Hemschemeier A, Caruana A, Pruvost J, Legrand J, Happe T, Peltier G, Cournac L., Appl. Environ. Microbiol. 71(10), 2005
PMID: 16204539
Hydrogen photoproduction is attenuated by disruption of an isoamylase gene in Chlamydomonas reinhardtii.
Posewitz MC, Smolinski SL, Kanakagiri S, Melis A, Seibert M, Ghirardi ML., Plant Cell 16(8), 2004
PMID: 15269330
Effects of extracellular pH on the metabolic pathways in sulfur-deprived, H2-producing Chlamydomonas reinhardtii cultures.
Kosourov S, Seibert M, Ghirardi ML., Plant Cell Physiol. 44(2), 2003
PMID: 12610217
Hydrogen production by Chlamydomonas reinhardtii: an elaborate interplay of electron sources and sinks.
Hemschemeier A, Fouchard S, Cournac L, Peltier G, Happe T., Planta 227(2), 2007
PMID: 17885762
Alternative photosynthetic electron transport pathways during anaerobiosis in the green alga Chlamydomonas reinhardtii.
Hemschemeier A, Happe T., Biochim. Biophys. Acta 1807(8), 2011
PMID: 21376011
Biochemistry of hydrogen metabolism in Chlamydomonas reinhardtii wild type and a Rubisco-less mutant.
White AL, Melis A., 2006
Improved biohydrogen production with an expression of codon-optimized hemH and lba genes in the chloroplast of Chlamydomonas reinhardtii.
Wu S, Xu L, Huang R, Wang Q., Bioresour. Technol. 102(3), 2010
PMID: 21036035
The nucleus-encoded protein MOC1 is essential for mitochondrial light acclimation in Chlamydomonas reinhardtii.
Schonfeld C, Wobbe L, Borgstadt R, Kienast A, Nixon PJ, Kruse O., J. Biol. Chem. 279(48), 2004
PMID: 15448140
Functional integration of the HUP1 hexose symporter gene into the genome of C. reinhardtii: Impacts on biological H(2) production.
Doebbe A, Rupprecht J, Beckmann J, Mussgnug JH, Hallmann A, Hankamer B, Kruse O., J. Biotechnol. 131(1), 2007
PMID: 17624461
On the Factors Which Determine Massive beta-Carotene Accumulation in the Halotolerant Alga Dunaliella bardawil.
Ben-Amotz A, Avron M., Plant Physiol. 72(3), 1983
PMID: 16663050
Insights into the survival of Chlamydomonas reinhardtii during sulfur starvation based on microarray analysis of gene expression.
Zhang Z, Shrager J, Jain M, Chang CW, Vallon O, Grossman AR., Eukaryotic Cell 3(5), 2004
PMID: 15470261
Analysis of LhcSR3, a protein essential for feedback de-excitation in the green alga Chlamydomonas reinhardtii.
Bonente G, Ballottari M, Truong TB, Morosinotto T, Ahn TK., 2011
An ancient light-harvesting protein is critical for the regulation of algal photosynthesis.
Peers G, Truong TB, Ostendorf E, Busch A, Elrad D, Grossman AR, Hippler M, Niyogi KK., Nature 462(7272), 2009
PMID: 19940928
The chloroplast calcium sensor CAS is required for photoacclimation in Chlamydomonas reinhardtii.
Petroutsos D, Busch A, Janssen I, Trompelt K, Bergner SV, Weinl S, Holtkamp M, Karst U, Kudla J, Hippler M., Plant Cell 23(8), 2011
PMID: 21856795
Calcium signals: the lead currency of plant information processing.
Kudla J, Batistic O, Hashimoto K., Plant Cell 22(3), 2010
PMID: 20354197
Co-regulation of a gene homologous to early light-induced genes in higher plants and beta-carotene biosynthesis in the alga Dunaliella bardawil.
Lers A, Levy H, Zamir A., J. Biol. Chem. 266(21), 1991
PMID: 1856203
Light-harvesting complex II pigments and proteins in association with Cbr, a homolog of higher-plant early light-inducible proteins in the unicellular green alga Dunaliella.
Banet G, Pick U, Zamir A., Planta 210(6), 2000
PMID: 10872227
Phosphorylation of C6- and C3-positions of glucosyl residues in starch is catalysed by distinct dikinases.
Ritte G, Heydenreich M, Mahlow S, Haebel S, Kotting O, Steup M., FEBS Lett. 580(20), 2006
PMID: 16914145
Phosphorylation of transitory starch is increased during degradation.
Ritte G, Scharf A, Eckermann N, Haebel S, Steup M., Plant Physiol. 135(4), 2004
PMID: 15286293
Improved photobiological H2 production in engineered green algal cells.
Kruse O, Rupprecht J, Bader KP, Thomas-Hall S, Schenk PM, Finazzi G, Hankamer B., J. Biol. Chem. 280(40), 2005
PMID: 16100118
Ferredoxin-dependent chloroplast enzymes.
Knaff DB, Hirasawa M., Biochim. Biophys. Acta 1056(2), 1991
PMID: 1671559
Plant sulfite reductase: molecular structure, catalytic function and interaction with ferredoxin.
Nakayama M, Akashi T, Hase T., J. Inorg. Biochem. 82(1-4), 2000
PMID: 11132635
Synthesis of cell constituents from C2-units by a modified tricarboxylic acid cycle.
KORNBERG HL, KREBS HA., Nature 179(4568), 1957
PMID: 13430766
The regulation of photosynthetic electron transport during nutrient deprivation in Chlamydomonas reinhardtii.
Wykoff DD, Davies JP, Melis A, Grossman AR., Plant Physiol. 117(1), 1998
PMID: 9576782
Chlamydomonas Xanthophyll Cycle Mutants Identified by Video Imaging of Chlorophyll Fluorescence Quenching.
Niyogi KK, Bjorkman O, Grossman AR., Plant Cell 9(8), 1997
PMID: 12237386
Beneficial interactions of mitochondrial metabolism with photosynthetic carbon assimilation.
Raghavendra AS, Padmasree K., Trends Plant Sci. 8(11), 2003
PMID: 14607100
The onset of NPQ and Deltamu(H)+ upon illumination of tobacco plants studied through the influence of mitochondrial electron transport.
Cardol P, De Paepe R, Franck F, Forti G, Finazzi G., Biochim. Biophys. Acta 1797(2), 2009
PMID: 19836343
Control of hydrogen photoproduction by the proton gradient generated by cyclic electron flow in Chlamydomonas reinhardtii.
Tolleter D, Ghysels B, Alric J, Petroutsos D, Tolstygina I, Krawietz D, Happe T, Auroy P, Adriano JM, Beyly A, Cuine S, Plet J, Reiter IM, Genty B, Cournac L, Hippler M, Peltier G., Plant Cell 23(7), 2011
PMID: 21764992
Highly specific gene silencing by artificial microRNAs in the unicellular alga Chlamydomonas reinhardtii.
Molnar A, Bassett A, Thuenemann E, Schwach F, Karkare S, Ossowski S, Weigel D, Baulcombe D., Plant J. 58(1), 2009
PMID: 19054357
Algal lipid bodies: stress induction, purification, and biochemical characterization in wild-type and starchless Chlamydomonas reinhardtii.
Wang ZT, Ullrich N, Joo S, Waffenschmidt S, Goodenough U., Eukaryotic Cell 8(12), 2009
PMID: 19880756
A type II NAD(P)H dehydrogenase mediates light-independent plastoquinone reduction in the chloroplast of Chlamydomonas.
Jans F, Mignolet E, Houyoux PA, Cardol P, Ghysels B, Cuine S, Cournac L, Peltier G, Remacle C, Franck F., Proc. Natl. Acad. Sci. U.S.A. 105(51), 2008
PMID: 19074271
Studies on the metabolism of unsaturated fatty acids. XIV. Purification and properties of NADPH-dependent trans-2-enoyl-CoA reductase of Escherichia coli K-12.
Nishimaki T, Yamanaka H, Mizugaki M., J. Biochem. 95(5), 1984
PMID: 6378898
Nonphotochemical quenching of chlorophyll fluorescence in Chlamydomonas reinhardtii.
Finazzi G, Johnson GN, Dall'Osto L, Zito F, Bonente G, Bassi R, Wollman FA., Biochemistry 45(5), 2006
PMID: 16445291
A major light-harvesting polypeptide of photosystem II functions in thermal dissipation.
Elrad D, Niyogi KK, Grossman AR., Plant Cell 14(8), 2002
PMID: 12172023
Functional genomics of eukaryotic photosynthesis using insertional mutagenesis of Chlamydomonas reinhardtii.
Dent RM, Haglund CM, Chin BL, Kobayashi MC, Niyogi KK., Plant Physiol. 137(2), 2005
PMID: 15653810

Harris E., 1989
Generation of an oligonucleotide array for analysis of gene expression in Chlamydomonas reinhardtii.
Eberhard S, Jain M, Im CS, Pollock S, Shrager J, Lin Y, Peek AS, Grossman AR., Curr. Genet. 49(2), 2005
PMID: 16333659
Hemin and magnesium-protoporphyrin IX induce global changes in gene expression in Chlamydomonas reinhardtii.
Voss B, Meinecke L, Kurz T, Al-Babili S, Beck CF, Hess WR., Plant Physiol. 155(2), 2010
PMID: 21148414
Java Treeview--extensible visualization of microarray data.
Saldanha AJ., Bioinformatics 20(17), 2004
PMID: 15180930
Cysteine modification of a specific repressor protein controls the translational status of nucleus-encoded LHCII mRNAs in Chlamydomonas.
Wobbe L, Blifernez O, Schwarz C, Mussgnug JH, Nickelsen J, Kruse O., Proc. Natl. Acad. Sci. U.S.A. 106(32), 2009
PMID: 19666611
Quantification on the LightCycler instrument.
Rasmussen R., 2001
COPPER ENZYMES IN ISOLATED CHLOROPLASTS. POLYPHENOLOXIDASE IN BETA VULGARIS.
Arnon DI., Plant Physiol. 24(1), 1949
PMID: 16654194

Sambrook J, Fritsch EF, Maniatis T., 1989
Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®
Quellen

PMID: 22242116
PubMed | Europe PMC

Suchen in

Google Scholar