Chemically induced photoswitching of fluorescent probes – a general concept for super-resolution imaging

Endesfelder, Ulrike; Malkusch, Sebastian; Flottmann, B.; Mondry, J.; Liguzinski, P.; Verweer, P.J.; Heilemann, Mike

Chemically induced photoswitching of fluorescent probes – a general concept for super-resolution imaging

Endesfelder U, Malkusch S, Flottmann B, Mondry J, Liguzinski P, Verweer PJ, Heilemann M (2011)
Molecules 16(4): 3106-3118.

Zeitschriftenaufsatz | Veröffentlicht | Englisch

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DOI

https://doi.org/10.3390/molecules16043106

Autor*in

Endesfelder, Ulrike^UniBi; Malkusch, Sebastian^UniBi; Flottmann, B.; Mondry, J.; Liguzinski, P.; Verweer, P.J.; Heilemann, Mike^UniBi

Einrichtung

Fakultät für Physik

Erscheinungsjahr

2011

Zeitschriftentitel

Molecules

Band

16

Ausgabe

4

Seite(n)

3106-3118

ISSN

1431-5157

eISSN

1420-3049

Page URI

https://pub.uni-bielefeld.de/record/2444552

Zitieren

Endesfelder U, Malkusch S, Flottmann B, et al. Chemically induced photoswitching of fluorescent probes – a general concept for super-resolution imaging. Molecules. 2011;16(4):3106-3118.

Endesfelder, U., Malkusch, S., Flottmann, B., Mondry, J., Liguzinski, P., Verweer, P. J., & Heilemann, M. (2011). Chemically induced photoswitching of fluorescent probes – a general concept for super-resolution imaging. Molecules, 16(4), 3106-3118. https://doi.org/10.3390/molecules16043106

Endesfelder, Ulrike, Malkusch, Sebastian, Flottmann, B., Mondry, J., Liguzinski, P., Verweer, P.J., and Heilemann, Mike. 2011. “Chemically induced photoswitching of fluorescent probes – a general concept for super-resolution imaging”. Molecules 16 (4): 3106-3118.

Endesfelder, U., Malkusch, S., Flottmann, B., Mondry, J., Liguzinski, P., Verweer, P. J., and Heilemann, M. (2011). Chemically induced photoswitching of fluorescent probes – a general concept for super-resolution imaging. Molecules 16, 3106-3118.

Endesfelder, U., et al., 2011. Chemically induced photoswitching of fluorescent probes – a general concept for super-resolution imaging. Molecules, 16(4), p 3106-3118.

U. Endesfelder, et al., “Chemically induced photoswitching of fluorescent probes – a general concept for super-resolution imaging”, Molecules, vol. 16, 2011, pp. 3106-3118.

Endesfelder, U., Malkusch, S., Flottmann, B., Mondry, J., Liguzinski, P., Verweer, P.J., Heilemann, M.: Chemically induced photoswitching of fluorescent probes – a general concept for super-resolution imaging. Molecules. 16, 3106-3118 (2011).

Endesfelder, Ulrike, Malkusch, Sebastian, Flottmann, B., Mondry, J., Liguzinski, P., Verweer, P.J., and Heilemann, Mike. “Chemically induced photoswitching of fluorescent probes – a general concept for super-resolution imaging”. Molecules 16.4 (2011): 3106-3118.

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51 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Subsynaptic Domains in Super-Resolution Microscopy: The Treachery of Images.
Yang X, Specht CG., Front Mol Neurosci 12(), 2019
PMID: 31312120

Excitation-multiplexed multicolor superresolution imaging with fm-STORM and fm-DNA-PAINT.
Gómez-García PA, Garbacik ET, Otterstrom JJ, Garcia-Parajo MF, Lakadamyali M., Proc Natl Acad Sci U S A 115(51), 2018
PMID: 30509979

Brain Slice Staining and Preparation for Three-Dimensional Super-Resolution Microscopy.
German CL, Gudheti MV, Fleckenstein AE, Jorgensen EM., Methods Mol Biol 1663(), 2017
PMID: 28924666

Protein sorting by lipid phase-like domains supports emergent signaling function in B lymphocyte plasma membranes.
Stone MB, Shelby SA, Núñez MF, Wisser K, Veatch SL., Elife 6(), 2017
PMID: 28145867

Super-Resolution Microscopy: Shedding Light on the Cellular Plasma Membrane.
Stone MB, Shelby SA, Veatch SL., Chem Rev 117(11), 2017
PMID: 28211677

Optimized labeling of membrane proteins for applications to super-resolution imaging in confined cellular environments using monomeric streptavidin.
Chamma I, Rossier O, Giannone G, Thoumine O, Sainlos M., Nat Protoc 12(4), 2017
PMID: 28277548

Progress in the Correlative Atomic Force Microscopy and Optical Microscopy.
Zhou L, Cai M, Tong T, Wang H., Sensors (Basel) 17(4), 2017
PMID: 28441775

A new photoactivatable near-infrared-emitting QCy7 fluorophore for single-molecule super-resolution microscopy.
Klötzner DP, Klehs K, Heilemann M, Heckel A., Chem Commun (Camb) 53(71), 2017
PMID: 28825088

Localization-based super-resolution imaging meets high-content screening.
Beghin A, Kechkar A, Butler C, Levet F, Cabillic M, Rossier O, Giannone G, Galland R, Choquet D, Sibarita JB., Nat Methods 14(12), 2017
PMID: 29083400

Quantitative super-resolution imaging with qPAINT.
Jungmann R, Avendaño MS, Dai M, Woehrstein JB, Agasti SS, Feiger Z, Rodal A, Yin P., Nat Methods 13(5), 2016
PMID: 27018580

Two-photon excited photoconversion of cyanine-based dyes.
Kwok SJ, Choi M, Bhayana B, Zhang X, Ran C, Yun SH., Sci Rep 6(), 2016
PMID: 27029524

Methodology for Quantitative Characterization of Fluorophore Photoswitching to Predict Superresolution Microscopy Image Quality.
Bittel AM, Nickerson A, Saldivar IS, Dolman NJ, Nan X, Gibbs SL., Sci Rep 6(), 2016
PMID: 27412307

From single molecules to life: microscopy at the nanoscale.
Turkowyd B, Virant D, Endesfelder U., Anal Bioanal Chem 408(25), 2016
PMID: 27613013

Does super-resolution fluorescence microscopy obsolete previous microscopic approaches to protein co-localization?
MacDonald L, Baldini G, Storrie B., Methods Mol Biol 1270(), 2015
PMID: 25702123

One, two or three? Probing the stoichiometry of membrane proteins by single-molecule localization microscopy.
Fricke F, Beaudouin J, Eils R, Heilemann M., Sci Rep 5(), 2015
PMID: 26358640

Super-Resolution Imaging Conditions for enhanced Yellow Fluorescent Protein (eYFP) Demonstrated on DNA Origami Nanorulers.
Jusuk I, Vietz C, Raab M, Dammeyer T, Tinnefeld P., Sci Rep 5(), 2015
PMID: 26373229

How to switch a fluorophore: from undesired blinking to controlled photoswitching.
van de Linde S, Sauer M., Chem Soc Rev 43(4), 2014
PMID: 23942584

Eight years of single-molecule localization microscopy.
Klein T, Proppert S, Sauer M., Histochem Cell Biol 141(6), 2014
PMID: 24496595

Quantitative single-molecule localization microscopy combined with rule-based modeling reveals ligand-induced TNF-R1 reorganization toward higher-order oligomers.
Fricke F, Malkusch S, Wangorsch G, Greiner JF, Kaltschmidt B, Kaltschmidt C, Widera D, Dandekar T, Heilemann M., Histochem Cell Biol 142(1), 2014
PMID: 24519400

Phototransformable fluorescent proteins: which one for which application?
Adam V., Histochem Cell Biol 142(1), 2014
PMID: 24522394

A simple method to estimate the average localization precision of a single-molecule localization microscopy experiment.
Endesfelder U, Malkusch S, Fricke F, Heilemann M., Histochem Cell Biol 141(6), 2014
PMID: 24522395

Super-resolution imaging with stochastic single-molecule localization: concepts, technical developments, and biological applications.
Oddone A, Vilanova IV, Tam J, Lakadamyali M., Microsc Res Tech 77(7), 2014
PMID: 24616244

Single-molecule super-resolution imaging by tryptophan-quenching-induced photoswitching of phalloidin-fluorophore conjugates.
Nanguneri S, Flottmann B, Herrmannsdörfer F, Thomas K, Heilemann M., Microsc Res Tech 77(7), 2014
PMID: 24595992

Far-red organic fluorophores contain a fluorescent impurity.
Stone MB, Veatch SL., Chemphyschem 15(11), 2014
PMID: 24782148

In cellulo evaluation of phototransformation quantum yields in fluorescent proteins used as markers for single-molecule localization microscopy.
Avilov S, Berardozzi R, Gunewardene MS, Adam V, Hess ST, Bourgeois D., PLoS One 9(6), 2014
PMID: 24915511

Phototransformable fluorescent proteins: Future challenges.
Adam V, Berardozzi R, Byrdin M, Bourgeois D., Curr Opin Chem Biol 20(), 2014
PMID: 24971562

Technical review: types of imaging-direct STORM.
Jensen E, Crossman DJ., Anat Rec (Hoboken) 297(12), 2014
PMID: 24995970

Cross-talk-free multi-color STORM imaging using a single fluorophore.
Tam J, Cordier GA, Borbely JS, Sandoval Álvarez A, Lakadamyali M., PLoS One 9(7), 2014
PMID: 25000286

Single-molecule localization microscopy using mCherry.
Winterflood CM, Ewers H., Chemphyschem 15(16), 2014
PMID: 25111075

Imaging live cells at the nanometer-scale with single-molecule microscopy: obstacles and achievements in experiment optimization for microbiology.
Haas BL, Matson JS, DiRita VJ, Biteen JS., Molecules 19(8), 2014
PMID: 25123183

Quantitative super-resolution imaging of Bruchpilot distinguishes active zone states.
Ehmann N, van de Linde S, Alon A, Ljaschenko D, Keung XZ, Holm T, Rings A, DiAntonio A, Hallermann S, Ashery U, Heckmann M, Sauer M, Kittel RJ., Nat Commun 5(), 2014
PMID: 25130366

Oxygen depletion speeds and simplifies diffusion in HeLa cells.
Edwald E, Stone MB, Gray EM, Wu J, Veatch SL., Biophys J 107(8), 2014
PMID: 25418168

Quantitative microscopy of functional HIV post-entry complexes reveals association of replication with the viral capsid.
Peng K, Muranyi W, Glass B, Laketa V, Yant SR, Tsai L, Cihlar T, Müller B, Kräusslich HG., Elife 3(), 2014
PMID: 25517934

Single-molecule coordinate-based analysis of the morphology of HIV-1 assembly sites with near-molecular spatial resolution.
Malkusch S, Muranyi W, Müller B, Kräusslich HG, Heilemann M., Histochem Cell Biol 139(1), 2013
PMID: 22910843

Investigating cellular structures at the nanoscale with organic fluorophores.
van de Linde S, Aufmkolk S, Franke C, Holm T, Klein T, Löschberger A, Proppert S, Wolter S, Sauer M., Chem Biol 20(1), 2013
PMID: 23352135

Roles played by capsid-dependent induction of membrane curvature and Gag-ESCRT interactions in tetherin recruitment to HIV-1 assembly sites.
Grover JR, Llewellyn GN, Soheilian F, Nagashima K, Veatch SL, Ono A., J Virol 87(8), 2013
PMID: 23408603

Super-resolution microscopy reveals specific recruitment of HIV-1 envelope proteins to viral assembly sites dependent on the envelope C-terminal tail.
Muranyi W, Malkusch S, Müller B, Heilemann M, Kräusslich HG., PLoS Pathog 9(2), 2013
PMID: 23468635

Multiscale spatial organization of RNA polymerase in Escherichia coli.
Endesfelder U, Finan K, Holden SJ, Cook PR, Kapanidis AN, Heilemann M., Biophys J 105(1), 2013
PMID: 23823236

Single-molecule localization microscopy-near-molecular spatial resolution in light microscopy with photoswitchable fluorophores.
Fürstenberg A, Heilemann M., Phys Chem Chem Phys 15(36), 2013
PMID: 23925641

Counting molecules in single organelles with superresolution microscopy allows tracking of the endosome maturation trajectory.
Puchner EM, Walter JM, Kasper R, Huang B, Lim WA., Proc Natl Acad Sci U S A 110(40), 2013
PMID: 24043832

Coordinate-based colocalization analysis of single-molecule localization microscopy data.
Malkusch S, Endesfelder U, Mondry J, Gelléri M, Verveer PJ, Heilemann M., Histochem Cell Biol 137(1), 2012
PMID: 22086768

Super-resolution fluorescence imaging of chromosomal DNA.
Zessin PJ, Finan K, Heilemann M., J Struct Biol 177(2), 2012
PMID: 22226957

Live-cell super-resolution imaging with synthetic fluorophores.
van de Linde S, Heilemann M, Sauer M., Annu Rev Phys Chem 63(), 2012
PMID: 22404589

Correlation functions quantify super-resolution images and estimate apparent clustering due to over-counting.
Veatch SL, Machta BB, Shelby SA, Chiang EN, Holowka DA, Baird BA., PLoS One 7(2), 2012
PMID: 22384026

Triple-color super-resolution imaging of live cells: resolving submicroscopic receptor organization in the plasma membrane.
Wilmes S, Staufenbiel M, Lisse D, Richter CP, Beutel O, Busch KB, Hess ST, Piehler J., Angew Chem Int Ed Engl 51(20), 2012
PMID: 22488831

Reversible photoswitching in fluorescent proteins: a mechanistic view.
Bourgeois D, Adam V., IUBMB Life 64(6), 2012
PMID: 22535712

Three-dimensional, tomographic super-resolution fluorescence imaging of serially sectioned thick samples.
Nanguneri S, Flottmann B, Horstmann H, Heilemann M, Kuner T., PLoS One 7(5), 2012
PMID: 22662272

Quantitative single-molecule microscopy reveals that CENP-A(Cnp1) deposition occurs during G2 in fission yeast.
Lando D, Endesfelder U, Berger H, Subramanian L, Dunne PD, McColl J, Klenerman D, Carr AM, Sauer M, Allshire RC, Heilemann M, Laue ED., Open Biol 2(7), 2012
PMID: 22870388

Fluorescence localization microscopy: The transition from concept to biological research tool.
Owen DM, Sauer M, Gaus K., Commun Integr Biol 5(4), 2012
PMID: 23060958

Fluorescent probes and fluorescence (microscopy) techniques--illuminating biological and biomedical research.
Drummen GP., Molecules 17(12), 2012
PMID: 23192185

Accurate construction of photoactivated localization microscopy (PALM) images for quantitative measurements.
Coltharp C, Kessler RP, Xiao J., PLoS One 7(12), 2012
PMID: 23251611

54 References

Daten bereitgestellt von Europe PubMed Central.

Real-time computation of subdiffraction-resolution fluorescence images.
Wolter S, Schuttpelz M, Tscherepanow M, VAN DE Linde S, Heilemann M, Sauer M., J Microsc 237(1), 2010
PMID: 20055915

High-density mapping of single-molecule trajectories with photoactivated localization microscopy.
Manley S, Gillette JM, Patterson GH, Shroff H, Hess HF, Betzig E, Lippincott-Schwartz J., Nat. Methods 5(2), 2008
PMID: 18193054

Photoinduced formation of reversible dye radicals and their impact on super-resolution imaging.
van de Linde S, Krstic I, Prisner T, Doose S, Heilemann M, Sauer M., Photochem. Photobiol. Sci. 10(4), 2010
PMID: 21152594

Photoactivatable mCherry for high-resolution two-color fluorescence microscopy.
Subach FV, Patterson GH, Manley S, Gillette JM, Lippincott-Schwartz J, Verkhusha VV., Nat. Methods 6(2), 2009
PMID: 19169259

Microscopy and its focal switch.
Hell SW., Nat. Methods 6(1), 2009
PMID: 19116611

Live-cell super-resolution imaging with trimethoprim conjugates.
Wombacher R, Heidbreder M, van de Linde S, Sheetz MP, Heilemann M, Cornish VW, Sauer M., Nat. Methods 7(9), 2010
PMID: 20693998

Live-cell photoactivated localization microscopy of nanoscale adhesion dynamics.
Shroff H, Galbraith CG, Galbraith JA, Betzig E., Nat. Methods 5(5), 2008
PMID: 18408726

Fluorescence microscopy beyond the diffraction limit.
Heilemann M., J. Biotechnol. 149(4), 2010
PMID: 20347891

Multicolor photoswitching microscopy for subdiffraction-resolution fluorescence imaging.
van de Linde S, Endesfelder U, Mukherjee A, Schuttpelz M, Wiebusch G, Wolter S, Heilemann M, Sauer M., Photochem. Photobiol. Sci. 8(4), 2009
PMID: 19337659

A photoactivatable GFP for selective photolabeling of proteins and cells.
Patterson GH, Lippincott-Schwartz J., Science 297(5588), 2002
PMID: 12228718

A bright and photostable photoconvertible fluorescent protein.
McKinney SA, Murphy CS, Hazelwood KL, Davidson MW, Looger LL., Nat. Methods 6(2), 2009
PMID: 19169260

Super-resolution imaging with small organic fluorophores.
Heilemann M, van de Linde S, Mukherjee A, Sauer M., Angew. Chem. Int. Ed. Engl. 48(37), 2009
PMID: 19670280

Single molecule high-resolution colocalization of Cy3 and Cy5 attached to macromolecules measures intramolecular distances through time.
Churchman LS, Okten Z, Rock RS, Dawson JF, Spudich JA., Proc. Natl. Acad. Sci. U.S.A. 102(5), 2005
PMID: 15668396

Precise nanometer localization analysis for individual fluorescent probes.
Thompson RE, Larson DR, Webb WW., Biophys. J. 82(5), 2002
PMID: 11964263

Live-cell dSTORM with SNAP-tag fusion proteins.
Klein T, Loschberger A, Proppert S, Wolter S, van de Linde S, Sauer M., Nat. Methods 8(1), 2011
PMID: 21191367

Low efficiency of cytologic screening for cancer in situ of the cervix in older women.
Gustafsson L, Sparen P, Gustafsson M, Pettersson B, Wilander E, Bergstrom R, Adami HO., Int. J. Cancer 63(6), 1995
PMID: 8847138

Photoswitchable fluorescent proteins enable monochromatic multilabel imaging and dual color fluorescence nanoscopy.
Andresen M, Stiel AC, Folling J, Wenzel D, Schonle A, Egner A, Eggeling C, Hell SW, Jakobs S., Nat. Biotechnol. 26(9), 2008
PMID: 18724362

A general method for the covalent labeling of fusion proteins with small molecules in vivo.
Keppler A, Gendreizig S, Gronemeyer T, Pick H, Vogel H, Johnsson K., Nat. Biotechnol. 21(1), 2002
PMID: 12469133

Photoswitchable cyan fluorescent protein for protein tracking.
Chudakov DM, Verkhusha VV, Staroverov DB, Souslova EA, Lukyanov S, Lukyanov KA., Nat. Biotechnol. 22(11), 2004
PMID: 15502815

TCR and Lat are expressed on separate protein islands on T cell membranes and concatenate during activation.
Lillemeier BF, Mortelmaier MA, Forstner MB, Huppa JB, Groves JT, Davis MM., Nat. Immunol. 11(1), 2009
PMID: 20010844

Breaking the diffraction resolution limit by stimulated emission: stimulated-emission-depletion fluorescence microscopy.
Hell SW, Wichmann J., Opt Lett 19(11), 1994
PMID: 19844443

Sub-diffraction-limit imaging by stochastic optical reconstruction microscopy (STORM).
Rust MJ, Bates M, Zhuang X., Nat. Methods 3(10), 2006
PMID: 16896339

Subdiffraction-resolution fluorescence imaging with conventional fluorescent probes.
Heilemann M, van de Linde S, Schuttpelz M, Kasper R, Seefeldt B, Mukherjee A, Tinnefeld P, Sauer M., Angew. Chem. Int. Ed. Engl. 47(33), 2008
PMID: 18646237

Carbocyanine dyes as efficient reversible single-molecule optical switch.
Heilemann M, Margeat E, Kasper R, Sauer M, Tinnefeld P., J. Am. Chem. Soc. 127(11), 2005
PMID: 15771514

Engineering of a monomeric green-to-red photoactivatable fluorescent protein induced by blue light.
Gurskaya NG, Verkhusha VV, Shcheglov AS, Staroverov DB, Chepurnykh TV, Fradkov AF, Lukyanov S, Lukyanov KA., Nat. Biotechnol. 24(4), 2006
PMID: 16550175

Subdiffraction-resolution fluorescence microscopy of myosin-actin motility.
Endesfelder U, van de Linde S, Wolter S, Sauer M, Heilemann M., Chemphyschem 11(4), 2010
PMID: 20186905

Imaging intracellular fluorescent proteins at nanometer resolution.
Betzig E, Patterson GH, Sougrat R, Lindwasser OW, Olenych S, Bonifacino JS, Davidson MW, Lippincott-Schwartz J, Hess HF., Science 313(5793), 2006
PMID: 16902090