Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation
Schröder J, Maus I, Trost E, Tauch A (2011)
BMC Genomics 12(1): 545.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
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Abstract / Bemerkung
Corynebacterium variabile is part of the complex microflora on the surface of smear-ripened cheeses and contributes to the development of flavor and textural properties during cheese ripening. Still little is known about the metabolic processes and microbial interactions during the production of smear-ripened cheeses. Therefore, the gene repertoire contributing to the lifestyle of the cheese isolate C. variabile DSM 44702 was deduced from the complete genome sequence to get a better understanding of this industrial process. The chromosome of C. variabile DSM 44702 is composed of 3, 433, 007 bp and contains 3, 071 protein-coding regions. A comparative analysis of this gene repertoire with that of other corynebacteria detected 1, 534 predicted genes to be specific for the cheese isolate. These genes might contribute to distinct metabolic capabilities of C. variabile, as several of them are associated with metabolic functions in cheese habitats by playing roles in the utilization of alternative carbon and sulphur sources, in amino acid metabolism, and fatty acid degradation. Relevant C. variabile genes confer the capability to catabolize gluconate, lactate, propionate, taurine, and gamma-aminobutyric acid and to utilize external caseins. In addition, C. variabile is equipped with several siderophore biosynthesis gene clusters for iron acquisition and an exceptional repertoire of AraC-regulated iron uptake systems. Moreover, C. variabile can produce acetoin, butanediol, and methanethiol, which are important flavor compounds in smear-ripened cheeses. The genome sequence of C. variabile provides detailed insights into the distinct metabolic features of this bacterium, implying a strong adaption to the iron-depleted cheese surface habitat. By combining in silico data obtained from the genome annotation with previous experimental knowledge, occasional observations on genes that are involved in the complex metabolic capacity of C. variabile were integrated into a global view on the lifestyle of this species.
Erscheinungsjahr
2011
Zeitschriftentitel
BMC Genomics
Band
12
Ausgabe
1
Art.-Nr.
545
ISSN
1471-2164
Finanzierungs-Informationen
Open-Access-Publikationskosten wurden durch die Deutsche Forschungsgemeinschaft und die Universität Bielefeld gefördert.
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https://pub.uni-bielefeld.de/record/2442587
Zitieren
Schröder J, Maus I, Trost E, Tauch A. Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation. BMC Genomics. 2011;12(1): 545.
Schröder, J., Maus, I., Trost, E., & Tauch, A. (2011). Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation. BMC Genomics, 12(1), 545. https://doi.org/10.1186/1471-2164-12-545
Schröder, Jasmin, Maus, Irena, Trost, Eva, and Tauch, Andreas. 2011. “Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation”. BMC Genomics 12 (1): 545.
Schröder, J., Maus, I., Trost, E., and Tauch, A. (2011). Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation. BMC Genomics 12:545.
Schröder, J., et al., 2011. Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation. BMC Genomics, 12(1): 545.
J. Schröder, et al., “Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation”, BMC Genomics, vol. 12, 2011, : 545.
Schröder, J., Maus, I., Trost, E., Tauch, A.: Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation. BMC Genomics. 12, : 545 (2011).
Schröder, Jasmin, Maus, Irena, Trost, Eva, and Tauch, Andreas. “Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation”. BMC Genomics 12.1 (2011): 545.
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2019-09-06T08:57:59Z
MD5 Prüfsumme
8665c7a332128f12d07ec2e552ed48c4
Daten bereitgestellt von European Bioinformatics Institute (EBI)
UNIPROT
2972 Einträge gefunden, die diesen Artikel zitieren von denen 10 angezeigt werden
Chromosomal replication initiator protein DnaA (UNIPROT: G0H9N5)
Organism: Corynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131)
Download in FASTA format
Organism: Corynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131)
Download in FASTA format
Beta sliding clamp (UNIPROT: G0H9N6)
Organism: Corynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131)
Download in FASTA format
Organism: Corynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131)
Download in FASTA format
DNA replication and repair protein RecF (UNIPROT: G0H9N7)
Organism: Corynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131)
Download in FASTA format
Organism: Corynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131)
Download in FASTA format
Uncharacterized protein (UNIPROT: G0H9N8)
Organism: Corynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131)
Download in FASTA format
Organism: Corynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131)
Download in FASTA format
DNA gyrase subunit B (UNIPROT: G0H9N9)
Organism: Corynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131)
Download in FASTA format
Organism: Corynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131)
Download in FASTA format
Uncharacterized protein (UNIPROT: G0H9P0)
Organism: Corynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131)
Download in FASTA format
Organism: Corynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131)
Download in FASTA format
ROK DNA-binding transcription regulator (UNIPROT: G0H9P1)
Organism: Corynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131)
Download in FASTA format
Organism: Corynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131)
Download in FASTA format
Alkanesulfonate monooxygenase (UNIPROT: G0H9P2)
Organism: Corynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131)
Download in FASTA format
Organism: Corynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131)
Download in FASTA format
Taurine ABC transport system permease protein (UNIPROT: G0H9P3)
Organism: Corynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131)
Download in FASTA format
Organism: Corynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131)
Download in FASTA format
Taurine ABC transport system substrate-binding protein (UNIPROT: G0H9P4)
Organism: Corynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131)
Download in FASTA format
Organism: Corynebacterium variabile (strain DSM 44702 / JCM 12073 / NCIMB 30131)
Download in FASTA format
EMBL
1 Eintrag gefunden, die diesen Artikel zitieren
Corynebacterium variabile DSM 44702, complete genome. (EMBL: CP002917)
Sequence length: 3433007
Download in FASTA format
Sequence length: 3433007
Download in FASTA format
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r2cat: synteny plots and comparative assembly
AUTHOR UNKNOWN, 2011
AUTHOR UNKNOWN, 2011
Consed: a graphical tool for sequence finishing.
Gordon D, Abajian C, Green P., Genome Res. 8(3), 1998
PMID: 9521923
Gordon D, Abajian C, Green P., Genome Res. 8(3), 1998
PMID: 9521923
GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369
tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.
Lowe TM, Eddy SR., Nucleic Acids Res. 25(5), 1997
PMID: 9023104
Lowe TM, Eddy SR., Nucleic Acids Res. 25(5), 1997
PMID: 9023104
Ori-Finder: a web-based system for finding oriCs in unannotated bacterial genomes.
Gao F, Zhang CT., BMC Bioinformatics 9(), 2008
PMID: 18237442
Gao F, Zhang CT., BMC Bioinformatics 9(), 2008
PMID: 18237442
Selection for chromosome architecture in bacteria.
Hendrickson H, Lawrence JG., J. Mol. Evol. 62(5), 2006
PMID: 16612541
Hendrickson H, Lawrence JG., J. Mol. Evol. 62(5), 2006
PMID: 16612541
Essentiality, not expressiveness, drives gene-strand bias in bacteria.
Rocha EP, Danchin A., Nat. Genet. 34(4), 2003
PMID: 12847524
Rocha EP, Danchin A., Nat. Genet. 34(4), 2003
PMID: 12847524
Comparative analysis of the Corynebacterium glutamicum group and complete genome sequence of strain R.
Yukawa H, Omumasaba CA, Nonaka H, Kos P, Okai N, Suzuki N, Suda M, Tsuge Y, Watanabe J, Ikeda Y, Vertes AA, Inui M., Microbiology (Reading, Engl.) 153(Pt 4), 2007
PMID: 17379713
Yukawa H, Omumasaba CA, Nonaka H, Kos P, Okai N, Suzuki N, Suda M, Tsuge Y, Watanabe J, Ikeda Y, Vertes AA, Inui M., Microbiology (Reading, Engl.) 153(Pt 4), 2007
PMID: 17379713
High-throughput transposon mutagenesis of Corynebacterium glutamicum and construction of a single-gene disruptant mutant library.
Suzuki N, Okai N, Nonaka H, Tsuge Y, Inui M, Yukawa H., Appl. Environ. Microbiol. 72(5), 2006
PMID: 16672528
Suzuki N, Okai N, Nonaka H, Tsuge Y, Inui M, Yukawa H., Appl. Environ. Microbiol. 72(5), 2006
PMID: 16672528
EDGAR: a software framework for the comparative analysis of prokaryotic genomes.
Blom J, Albaum SP, Doppmeier D, Puhler A, Vorholter FJ, Zakrzewski M, Goesmann A., BMC Bioinformatics 10(), 2009
PMID: 19457249
Blom J, Albaum SP, Doppmeier D, Puhler A, Vorholter FJ, Zakrzewski M, Goesmann A., BMC Bioinformatics 10(), 2009
PMID: 19457249
The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing.
Tauch A, Trost E, Tilker A, Ludewig U, Schneiker S, Goesmann A, Arnold W, Bekel T, Brinkrolf K, Brune I, Gotker S, Kalinowski J, Kamp PB, Lobo FP, Viehoever P, Weisshaar B, Soriano F, Droge M, Puhler A., J. Biotechnol. 136(1-2), 2008
PMID: 18367281
Tauch A, Trost E, Tilker A, Ludewig U, Schneiker S, Goesmann A, Arnold W, Bekel T, Brinkrolf K, Brune I, Gotker S, Kalinowski J, Kamp PB, Lobo FP, Viehoever P, Weisshaar B, Soriano F, Droge M, Puhler A., J. Biotechnol. 136(1-2), 2008
PMID: 18367281
Genomic and functional analyses of Rhodococcus equi phages ReqiPepy6, ReqiPoco6, ReqiPine5, and ReqiDocB7.
Summer EJ, Liu M, Gill JJ, Grant M, Chan-Cortes TN, Ferguson L, Janes C, Lange K, Bertoli M, Moore C, Orchard RC, Cohen ND, Young R., Appl. Environ. Microbiol. 77(2), 2010
PMID: 21097585
Summer EJ, Liu M, Gill JJ, Grant M, Chan-Cortes TN, Ferguson L, Janes C, Lange K, Bertoli M, Moore C, Orchard RC, Cohen ND, Young R., Appl. Environ. Microbiol. 77(2), 2010
PMID: 21097585
Comparative genome analysis of Listeria bacteriophages reveals extensive mosaicism, programmed translational frameshifting, and a novel prophage insertion site.
Dorscht J, Klumpp J, Bielmann R, Schmelcher M, Born Y, Zimmer M, Calendar R, Loessner MJ., J. Bacteriol. 191(23), 2009
PMID: 19783628
Dorscht J, Klumpp J, Bielmann R, Schmelcher M, Born Y, Zimmer M, Calendar R, Loessner MJ., J. Bacteriol. 191(23), 2009
PMID: 19783628
Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora.
Tauch A, Kaiser O, Hain T, Goesmann A, Weisshaar B, Albersmeier A, Bekel T, Bischoff N, Brune I, Chakraborty T, Kalinowski J, Meyer F, Rupp O, Schneiker S, Viehoever P, Puhler A., J. Bacteriol. 187(13), 2005
PMID: 15968079
Tauch A, Kaiser O, Hain T, Goesmann A, Weisshaar B, Albersmeier A, Bekel T, Bischoff N, Brune I, Chakraborty T, Kalinowski J, Meyer F, Rupp O, Schneiker S, Viehoever P, Puhler A., J. Bacteriol. 187(13), 2005
PMID: 15968079
Offering surprises: TCA cycle regulation in Corynebacterium glutamicum.
Bott M., Trends Microbiol. 15(9), 2007
PMID: 17764950
Bott M., Trends Microbiol. 15(9), 2007
PMID: 17764950
Combinations of antimycotics to inhibit the growth of molds capable of producing 1,3-pentadiene.
Mann DA, Beuchat LR., Food Microbiol. 25(1), 2007
PMID: 17993388
Mann DA, Beuchat LR., Food Microbiol. 25(1), 2007
PMID: 17993388
Identification and characterization of a bacterial transport system for the uptake of pyruvate, propionate, and acetate in Corynebacterium glutamicum.
Jolkver E, Emer D, Ballan S, Kramer R, Eikmanns BJ, Marin K., J. Bacteriol. 191(3), 2008
PMID: 19028892
Jolkver E, Emer D, Ballan S, Kramer R, Eikmanns BJ, Marin K., J. Bacteriol. 191(3), 2008
PMID: 19028892
Redirection of pyruvate pathway of lactic acid bacteria to improve cheese quality
AUTHOR UNKNOWN, 2009
AUTHOR UNKNOWN, 2009
The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129.
Cerdeno-Tarraga AM, Efstratiou A, Dover LG, Holden MT, Pallen M, Bentley SD, Besra GS, Churcher C, James KD, De Zoysa A, Chillingworth T, Cronin A, Dowd L, Feltwell T, Hamlin N, Holroyd S, Jagels K, Moule S, Quail MA, Rabbinowitsch E, Rutherford KM, Thomson NR, Unwin L, Whitehead S, Barrell BG, Parkhill J., Nucleic Acids Res. 31(22), 2003
PMID: 14602910
Cerdeno-Tarraga AM, Efstratiou A, Dover LG, Holden MT, Pallen M, Bentley SD, Besra GS, Churcher C, James KD, De Zoysa A, Chillingworth T, Cronin A, Dowd L, Feltwell T, Hamlin N, Holroyd S, Jagels K, Moule S, Quail MA, Rabbinowitsch E, Rutherford KM, Thomson NR, Unwin L, Whitehead S, Barrell BG, Parkhill J., Nucleic Acids Res. 31(22), 2003
PMID: 14602910
Molecular analysis of the anaerobic succinate degradation pathway in Clostridium kluyveri.
Sohling B, Gottschalk G., J. Bacteriol. 178(3), 1996
PMID: 8550525
Sohling B, Gottschalk G., J. Bacteriol. 178(3), 1996
PMID: 8550525
The respiratory chain of Corynebacterium glutamicum.
Bott M, Niebisch A., J. Biotechnol. 104(1-3), 2003
PMID: 12948635
Bott M, Niebisch A., J. Biotechnol. 104(1-3), 2003
PMID: 12948635
Characterization of the cydAB-encoded cytochrome bd oxidase from Mycobacterium smegmatis.
Kana BD, Weinstein EA, Avarbock D, Dawes SS, Rubin H, Mizrahi V., J. Bacteriol. 183(24), 2001
PMID: 11717265
Kana BD, Weinstein EA, Avarbock D, Dawes SS, Rubin H, Mizrahi V., J. Bacteriol. 183(24), 2001
PMID: 11717265
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics.
Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, Henrissat B., Nucleic Acids Res. 37(Database issue), 2008
PMID: 18838391
Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, Henrissat B., Nucleic Acids Res. 37(Database issue), 2008
PMID: 18838391
The Pfam protein families database.
Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, Holm L, Sonnhammer EL, Eddy SR, Bateman A., Nucleic Acids Res. 38(Database issue), 2009
PMID: 19920124
Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, Holm L, Sonnhammer EL, Eddy SR, Bateman A., Nucleic Acids Res. 38(Database issue), 2009
PMID: 19920124
Structural and sequence-based classification of glycoside hydrolases.
Henrissat B, Davies G., Curr. Opin. Struct. Biol. 7(5), 1997
PMID: 9345621
Henrissat B, Davies G., Curr. Opin. Struct. Biol. 7(5), 1997
PMID: 9345621
An evolving hierarchical family classification for glycosyltransferases.
Coutinho PM, Deleury E, Davies GJ, Henrissat B., J. Mol. Biol. 328(2), 2003
PMID: 12691742
Coutinho PM, Deleury E, Davies GJ, Henrissat B., J. Mol. Biol. 328(2), 2003
PMID: 12691742
A hierarchical classification of polysaccharide lyases for glycogenomics.
Lombard V, Bernard T, Rancurel C, Brumer H, Coutinho PM, Henrissat B., Biochem. J. 432(3), 2010
PMID: 20925655
Lombard V, Bernard T, Rancurel C, Brumer H, Coutinho PM, Henrissat B., Biochem. J. 432(3), 2010
PMID: 20925655
Carbohydrate-binding modules: fine-tuning polysaccharide recognition.
Boraston AB, Bolam DN, Gilbert HJ, Davies GJ., Biochem. J. 382(Pt 3), 2004
PMID: 15214846
Boraston AB, Bolam DN, Gilbert HJ, Davies GJ., Biochem. J. 382(Pt 3), 2004
PMID: 15214846
Determination of free amino acids in cheeses from the Czech market
AUTHOR UNKNOWN, 2009
AUTHOR UNKNOWN, 2009
Isoleucine uptake in Corynebacterium glutamicum ATCC 13032 is directed by the brnQ gene product.
Tauch A, Hermann T, Burkovski A, Kramer R, Puhler A, Kalinowski J., Arch. Microbiol. 169(4), 1998
PMID: 9531631
Tauch A, Hermann T, Burkovski A, Kramer R, Puhler A, Kalinowski J., Arch. Microbiol. 169(4), 1998
PMID: 9531631
Molecular analysis of the Corynebacterium glutamicum lysl gene involved in lysine uptake.
Seep-Feldhaus AH, Kalinowski J, Puhler A., Mol. Microbiol. 5(12), 1991
PMID: 1667221
Seep-Feldhaus AH, Kalinowski J, Puhler A., Mol. Microbiol. 5(12), 1991
PMID: 1667221
The ncgl1108 (PheP (Cg)) gene encodes a new L-Phe transporter in Corynebacterium glutamicum.
Zhao Z, Ding JY, Li T, Zhou NY, Liu SJ., Appl. Microbiol. Biotechnol. 90(6), 2011
PMID: 21468701
Zhao Z, Ding JY, Li T, Zhou NY, Liu SJ., Appl. Microbiol. Biotechnol. 90(6), 2011
PMID: 21468701
Functional analysis of sequences adjacent to dapE of Corynebacterium glutamicum reveals the presence of aroP, which encodes the aromatic amino acid transporter.
Wehrmann A, Morakkabati S, Kramer R, Sahm H, Eggeling L., J. Bacteriol. 177(20), 1995
PMID: 7592354
Wehrmann A, Morakkabati S, Kramer R, Sahm H, Eggeling L., J. Bacteriol. 177(20), 1995
PMID: 7592354
Corynebacterium glutamicum is equipped with four secondary carriers for compatible solutes: identification, sequencing, and characterization of the proline/ectoine uptake system, ProP, and the ectoine/proline/glycine betaine carrier, EctP.
Peter H, Weil B, Burkovski A, Kramer R, Morbach S., J. Bacteriol. 180(22), 1998
PMID: 9811661
Peter H, Weil B, Burkovski A, Kramer R, Morbach S., J. Bacteriol. 180(22), 1998
PMID: 9811661
Isolation of the putP gene of Corynebacterium glutamicum and characterization of a low-affinity uptake system for compatible solutes.
Peter H, Bader A, Burkovski A, Lambert C, Kramer R., Arch. Microbiol. 168(2), 1997
PMID: 9238106
Peter H, Bader A, Burkovski A, Lambert C, Kramer R., Arch. Microbiol. 168(2), 1997
PMID: 9238106
Structure of the gluABCD cluster encoding the glutamate uptake system of Corynebacterium glutamicum.
Kronemeyer W, Peekhaus N, Kramer R, Sahm H, Eggeling L., J. Bacteriol. 177(5), 1995
PMID: 7868586
Kronemeyer W, Peekhaus N, Kramer R, Sahm H, Eggeling L., J. Bacteriol. 177(5), 1995
PMID: 7868586
Methionine uptake in Corynebacterium glutamicum by MetQNI and by MetPS, a novel methionine and alanine importer of the NSS neurotransmitter transporter family
AUTHOR UNKNOWN, 2008
AUTHOR UNKNOWN, 2008
The Sec translocase.
du Plessis DJ, Nouwen N, Driessen AJ., Biochim. Biophys. Acta 1808(3), 2010
PMID: 20801097
du Plessis DJ, Nouwen N, Driessen AJ., Biochim. Biophys. Acta 1808(3), 2010
PMID: 20801097
A new twist on an old pathway--accessory Sec [corrected] systems.
Rigel NW, Braunstein M., Mol. Microbiol. 69(2), 2008
PMID: 18544071
Rigel NW, Braunstein M., Mol. Microbiol. 69(2), 2008
PMID: 18544071
Corynebacterium glutamicum possesses two secA homologous genes that are essential for viability.
Caspers M, Freudl R., Arch. Microbiol. 189(6), 2008
PMID: 18246326
Caspers M, Freudl R., Arch. Microbiol. 189(6), 2008
PMID: 18246326
Biogenesis of inner membrane proteins in Escherichia coli.
Luirink J, von Heijne G, Houben E, de Gier JW., Annu. Rev. Microbiol. 59(), 2005
PMID: 16153172
Luirink J, von Heijne G, Houben E, de Gier JW., Annu. Rev. Microbiol. 59(), 2005
PMID: 16153172
A neural network method for identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.
Nielsen H, Engelbrecht J, Brunak S, von Heijne G., Int J Neural Syst 8(5-6), 1997
PMID: 10065837
Nielsen H, Engelbrecht J, Brunak S, von Heijne G., Int J Neural Syst 8(5-6), 1997
PMID: 10065837
DOLOP--database of bacterial lipoproteins.
Madan Babu M, Sankaran K., Bioinformatics 18(4), 2002
PMID: 12016064
Madan Babu M, Sankaran K., Bioinformatics 18(4), 2002
PMID: 12016064
The cytosolic, cell surface and extracellular proteomes of the biotechnologically important soil bacterium Corynebacterium efficiens YS-314 in comparison to those of Corynebacterium glutamicum ATCC 13032.
Hansmeier N, Chao TC, Puhler A, Tauch A, Kalinowski J., Proteomics 6(1), 2006
PMID: 16302278
Hansmeier N, Chao TC, Puhler A, Tauch A, Kalinowski J., Proteomics 6(1), 2006
PMID: 16302278
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.
Krogh A, Larsson B, von Heijne G, Sonnhammer EL., J. Mol. Biol. 305(3), 2001
PMID: 11152613
Krogh A, Larsson B, von Heijne G, Sonnhammer EL., J. Mol. Biol. 305(3), 2001
PMID: 11152613
A genomic perspective on protein families.
Tatusov RL, Koonin EV, Lipman DJ., Science 278(5338), 1997
PMID: 9381173
Tatusov RL, Koonin EV, Lipman DJ., Science 278(5338), 1997
PMID: 9381173
Sequence and phylogenetic analyses of the twin-arginine targeting (Tat) protein export system.
Yen MR, Tseng YH, Nguyen EH, Wu LF, Saier MH Jr., Arch. Microbiol. 177(6), 2002
PMID: 12029389
Yen MR, Tseng YH, Nguyen EH, Wu LF, Saier MH Jr., Arch. Microbiol. 177(6), 2002
PMID: 12029389
A common export pathway for proteins binding complex redox cofactors?
Berks BC., Mol. Microbiol. 22(3), 1996
PMID: 8939424
Berks BC., Mol. Microbiol. 22(3), 1996
PMID: 8939424
Prediction of twin-arginine signal peptides.
Bendtsen JD, Nielsen H, Widdick D, Palmer T, Brunak S., BMC Bioinformatics 6(), 2005
PMID: 15992409
Bendtsen JD, Nielsen H, Widdick D, Palmer T, Brunak S., BMC Bioinformatics 6(), 2005
PMID: 15992409
Adaptation of protein secretion to extremely high-salt conditions by extensive use of the twin-arginine translocation pathway.
Rose RW, Bruser T, Kissinger JC, Pohlschroder M., Mol. Microbiol. 45(4), 2002
PMID: 12180915
Rose RW, Bruser T, Kissinger JC, Pohlschroder M., Mol. Microbiol. 45(4), 2002
PMID: 12180915
Mapping and comprehensive analysis of the extracellular and cell surface proteome of the human pathogen Corynebacterium diphtheriae.
Hansmeier N, Chao TC, Kalinowski J, Puhler A, Tauch A., Proteomics 6(8), 2006
PMID: 16544277
Hansmeier N, Chao TC, Kalinowski J, Puhler A, Tauch A., Proteomics 6(8), 2006
PMID: 16544277
Prokaryotic utilization of the twin-arginine translocation pathway: a genomic survey.
Dilks K, Rose RW, Hartmann E, Pohlschroder M., J. Bacteriol. 185(4), 2003
PMID: 12562823
Dilks K, Rose RW, Hartmann E, Pohlschroder M., J. Bacteriol. 185(4), 2003
PMID: 12562823
Transcriptional regulation of gene expression in Corynebacterium glutamicum: the role of global, master and local regulators in the modular and hierarchical gene regulatory network.
Schroder J, Tauch A., FEMS Microbiol. Rev. 34(5), 2010
PMID: 20491930
Schroder J, Tauch A., FEMS Microbiol. Rev. 34(5), 2010
PMID: 20491930
Comparative genomic reconstruction of transcriptional regulatory networks in bacteria.
Rodionov DA., Chem. Rev. 107(8), 2007
PMID: 17636889
Rodionov DA., Chem. Rev. 107(8), 2007
PMID: 17636889
The individual and common repertoire of DNA-binding transcriptional regulators of Corynebacterium glutamicum, Corynebacterium efficiens, Corynebacterium diphtheriae and Corynebacterium jeikeium deduced from the complete genome sequences.
Brune I, Brinkrolf K, Kalinowski J, Puhler A, Tauch A., BMC Genomics 6(), 2005
PMID: 15938759
Brune I, Brinkrolf K, Kalinowski J, Puhler A, Tauch A., BMC Genomics 6(), 2005
PMID: 15938759
The TetR family of transcriptional repressors.
Ramos JL, Martinez-Bueno M, Molina-Henares AJ, Teran W, Watanabe K, Zhang X, Gallegos MT, Brennan R, Tobes R., Microbiol. Mol. Biol. Rev. 69(2), 2005
PMID: 15944459
Ramos JL, Martinez-Bueno M, Molina-Henares AJ, Teran W, Watanabe K, Zhang X, Gallegos MT, Brennan R, Tobes R., Microbiol. Mol. Biol. Rev. 69(2), 2005
PMID: 15944459
The transcriptional regulatory network of the amino acid producer Corynebacterium glutamicum.
Brinkrolf K, Brune I, Tauch A., J. Biotechnol. 129(2), 2006
PMID: 17227685
Brinkrolf K, Brune I, Tauch A., J. Biotechnol. 129(2), 2006
PMID: 17227685
The DNA-binding domain as a functional indicator: the case of the AraC/XylS family of transcription factors.
Ibarra JA, Perez-Rueda E, Segovia L, Puente JL., Genetica 133(1), 2007
PMID: 17712603
Ibarra JA, Perez-Rueda E, Segovia L, Puente JL., Genetica 133(1), 2007
PMID: 17712603
Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids.
Tauch A, Schneider J, Szczepanowski R, Tilker A, Viehoever P, Gartemann KH, Arnold W, Blom J, Brinkrolf K, Brune I, Gotker S, Weisshaar B, Goesmann A, Droge M, Puhler A., J. Biotechnol. 136(1-2), 2008
PMID: 18430482
Tauch A, Schneider J, Szczepanowski R, Tilker A, Viehoever P, Gartemann KH, Arnold W, Blom J, Brinkrolf K, Brune I, Gotker S, Weisshaar B, Goesmann A, Droge M, Puhler A., J. Biotechnol. 136(1-2), 2008
PMID: 18430482
The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence.
Trost E, Ott L, Schneider J, Schroder J, Jaenicke S, Goesmann A, Husemann P, Stoye J, Dorella FA, Rocha FS, Soares Sde C, D'Afonseca V, Miyoshi A, Ruiz J, Silva A, Azevedo V, Burkovski A, Guiso N, Join-Lambert OF, Kayal S, Tauch A., BMC Genomics 11(), 2010
PMID: 21192786
Trost E, Ott L, Schneider J, Schroder J, Jaenicke S, Goesmann A, Husemann P, Stoye J, Dorella FA, Rocha FS, Soares Sde C, D'Afonseca V, Miyoshi A, Ruiz J, Silva A, Azevedo V, Burkovski A, Guiso N, Join-Lambert OF, Kayal S, Tauch A., BMC Genomics 11(), 2010
PMID: 21192786
Integrated analysis and reconstruction of microbial transcriptional gene regulatory networks using CoryneRegNet.
Baumbach J, Wittkop T, Kleindt CK, Tauch A., Nat Protoc 4(6), 2009
PMID: 19498379
Baumbach J, Wittkop T, Kleindt CK, Tauch A., Nat Protoc 4(6), 2009
PMID: 19498379
Effect of the activity levels of the added proteolytic enzyme mixture on free amino acids in ripening Ossau-Iraty cheese.
Izco JM, Irigoyen A, Torre P, Barcina Y., J Chromatogr A 881(1-2), 2000
PMID: 10905694
Izco JM, Irigoyen A, Torre P, Barcina Y., J Chromatogr A 881(1-2), 2000
PMID: 10905694
Content of taurine in Apulian Cacioricotta goat's cheese.
Pasqualone A, Caponio F, Alloggio V, Gomes T., Eur. Food Res. Technol. 211(3), 2000
PMID: IND22299417
Pasqualone A, Caponio F, Alloggio V, Gomes T., Eur. Food Res. Technol. 211(3), 2000
PMID: IND22299417
Synthesis of gamma-aminobutyric acid by lactic acid bacteria isolated from a variety of Italian cheeses.
Siragusa S, De Angelis M, Di Cagno R, Rizzello CG, Coda R, Gobbetti M., Appl. Environ. Microbiol. 73(22), 2007
PMID: 17890341
Siragusa S, De Angelis M, Di Cagno R, Rizzello CG, Coda R, Gobbetti M., Appl. Environ. Microbiol. 73(22), 2007
PMID: 17890341
Production of gamma-aminobutyric acid by cheese starters during cheese ripening.
Nomura M, Kimoto H, Someya Y, Furukawa S, Suzuki I., J. Dairy Sci. 81(6), 1998
PMID: 9684157
Nomura M, Kimoto H, Someya Y, Furukawa S, Suzuki I., J. Dairy Sci. 81(6), 1998
PMID: 9684157
Biochemical pathways for the production of flavour compounds in cheeses during ripening: A review
AUTHOR UNKNOWN, 2000
AUTHOR UNKNOWN, 2000
Flavour compound production and citrate metabolism in Lactococcus rhamnosus ATCC 7469
AUTHOR UNKNOWN, 1998
AUTHOR UNKNOWN, 1998
Citric acid metabolism in hetero- and homofermentative lactic acid bacteria.
Drinan DF, Robin S, Cogan TM., Appl. Environ. Microbiol. 31(4), 1976
PMID: 5054
Drinan DF, Robin S, Cogan TM., Appl. Environ. Microbiol. 31(4), 1976
PMID: 5054
Citrate metabolism in lactic acid bacteria
AUTHOR UNKNOWN, 1993
AUTHOR UNKNOWN, 1993
Flavours of cheese products: metabolic pathways, analytical tools and identification of producing strains.
Marilley L, Casey MG., Int. J. Food Microbiol. 90(2), 2004
PMID: 14698096
Marilley L, Casey MG., Int. J. Food Microbiol. 90(2), 2004
PMID: 14698096
Citrate utilization by Corynebacterium glutamicum is controlled by the CitAB two-component system through positive regulation of the citrate transport genes citH and tctCBA.
Brocker M, Schaffer S, Mack C, Bott M., J. Bacteriol. 191(12), 2009
PMID: 19376865
Brocker M, Schaffer S, Mack C, Bott M., J. Bacteriol. 191(12), 2009
PMID: 19376865
The GlxR regulon of the amino acid producer Corynebacterium glutamicum: Detection of the corynebacterial core regulon and integration into the transcriptional regulatory network model.
Kohl TA, Tauch A., J. Biotechnol. 143(4), 2009
PMID: 19665500
Kohl TA, Tauch A., J. Biotechnol. 143(4), 2009
PMID: 19665500
Bacterial surface-ripened cheeses
AUTHOR UNKNOWN, 2004
AUTHOR UNKNOWN, 2004
Growth characteristics of Brevibacterium, Corynebacterium, Microbacterium, and Staphylococcus spp. isolated from surface-ripened cheese.
Mounier J, Rea MC, O'Connor PM, Fitzgerald GF, Cogan TM., Appl. Environ. Microbiol. 73(23), 2007
PMID: 17921266
Mounier J, Rea MC, O'Connor PM, Fitzgerald GF, Cogan TM., Appl. Environ. Microbiol. 73(23), 2007
PMID: 17921266
The GlxR regulon of the amino acid producer Corynebacterium glutamicum: in silico and in vitro detection of DNA binding sites of a global transcription regulator.
Kohl TA, Baumbach J, Jungwirth B, Puhler A, Tauch A., J. Biotechnol. 135(4), 2008
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Content of taurine and other free amino acids in milk of goats bred in Italy
AUTHOR UNKNOWN, 1998
AUTHOR UNKNOWN, 1998
Determinations of taurine in milk and infant formula diets.
Erbersdobler HF, Trautwein E, Greulich HG., Eur. J. Pediatr. 142(2), 1984
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Erbersdobler HF, Trautwein E, Greulich HG., Eur. J. Pediatr. 142(2), 1984
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The dual transcriptional regulator CysR in Corynebacterium glutamicum ATCC 13032 controls a subset of genes of the McbR regulon in response to the availability of sulphide acceptor molecules.
Ruckert C, Milse J, Albersmeier A, Koch DJ, Puhler A, Kalinowski J., BMC Genomics 9(), 2008
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Ruckert C, Milse J, Albersmeier A, Koch DJ, Puhler A, Kalinowski J., BMC Genomics 9(), 2008
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The transcriptional regulator SsuR activates expression of the Corynebacterium glutamicum sulphonate utilization genes in the absence of sulphate.
Koch DJ, Ruckert C, Albersmeier A, Huser AT, Tauch A, Puhler A, Kalinowski J., Mol. Microbiol. 58(2), 2005
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Koch DJ, Ruckert C, Albersmeier A, Huser AT, Tauch A, Puhler A, Kalinowski J., Mol. Microbiol. 58(2), 2005
PMID: 16194234
The McbR repressor modulated by the effector substance S-adenosylhomocysteine controls directly the transcription of a regulon involved in sulphur metabolism of Corynebacterium glutamicum ATCC 13032.
Rey DA, Nentwich SS, Koch DJ, Ruckert C, Puhler A, Tauch A, Kalinowski J., Mol. Microbiol. 56(4), 2005
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Identification of McbR as transcription regulator of aecD and genes involved in methionine and cysteine biosynthesis in Corynebacterium jeikeium K411.
Brune I, Barzantny H, Klotzel M, Jones J, James G, Tauch A., J. Biotechnol. 151(1), 2010
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Enzymatic and structural aspects on glutamate decarboxylase
AUTHOR UNKNOWN, 2000
AUTHOR UNKNOWN, 2000
The Metabolism and Functions of [gamma]-Aminobutyric Acid.
Bown AW, Shelp BJ., Plant Physiol. 115(1), 1997
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Bown AW, Shelp BJ., Plant Physiol. 115(1), 1997
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Gene context analysis in the Integrated Microbial Genomes (IMG) data management system.
Mavromatis K, Chu K, Ivanova N, Hooper SD, Markowitz VM, Kyrpides NC., PLoS ONE 4(11), 2009
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Mavromatis K, Chu K, Ivanova N, Hooper SD, Markowitz VM, Kyrpides NC., PLoS ONE 4(11), 2009
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Structure and function of the LysR-type transcriptional regulator (LTTR) family proteins.
Maddocks SE, Oyston PC., Microbiology (Reading, Engl.) 154(Pt 12), 2008
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Maddocks SE, Oyston PC., Microbiology (Reading, Engl.) 154(Pt 12), 2008
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Nitrate and nitrite content of Greek cheeses.
Kyriakidis NB, Tarantili-Georgiou K, Tsani-Batzaka E., J Food Compost Anal 10(4), 1997
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Kyriakidis NB, Tarantili-Georgiou K, Tsani-Batzaka E., J Food Compost Anal 10(4), 1997
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Structure and transport mechanism of the bacterial oxalate transporter OxlT.
Hirai T, Subramaniam S., Biophys. J. 87(5), 2004
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Hirai T, Subramaniam S., Biophys. J. 87(5), 2004
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Effects of switching from whole to low-fat/fat-free milk in public schools - New York city, 2004-2009
AUTHOR UNKNOWN, 2010
AUTHOR UNKNOWN, 2010
The arthrobacter arilaitensis Re117 genome sequence reveals its genetic adaptation to the surface of cheese.
Monnet C, Loux V, Gibrat JF, Spinnler E, Barbe V, Vacherie B, Gavory F, Gourbeyre E, Siguier P, Chandler M, Elleuch R, Irlinger F, Vallaeys T., PLoS ONE 5(11), 2010
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Monnet C, Loux V, Gibrat JF, Spinnler E, Barbe V, Vacherie B, Gavory F, Gourbeyre E, Siguier P, Chandler M, Elleuch R, Irlinger F, Vallaeys T., PLoS ONE 5(11), 2010
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Wolf IV, Meinardi CA, Zalazar CA., Protein Pept. Lett. 16(10), 2009
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CDD: a Conserved Domain Database for the functional annotation of proteins.
Marchler-Bauer A, Lu S, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Lu F, Marchler GH, Mullokandov M, Omelchenko MV, Robertson CL, Song JS, Thanki N, Yamashita RA, Zhang D, Zhang N, Zheng C, Bryant SH., Nucleic Acids Res. 39(Database issue), 2010
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The Pks13/FadD32 crosstalk for the biosynthesis of mycolic acids in Mycobacterium tuberculosis.
Gavalda S, Leger M, van der Rest B, Stella A, Bardou F, Montrozier H, Chalut C, Burlet-Schiltz O, Marrakchi H, Daffe M, Quemard A., J. Biol. Chem. 284(29), 2009
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Transmembrane movement of exogenous long-chain fatty acids: proteins, enzymes, and vectorial esterification.
Black PN, DiRusso CC., Microbiol. Mol. Biol. Rev. 67(3), 2003
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beta-oxidation - strategies for the metabolism of a wide variety of acyl-CoA esters.
Hiltunen JK, Qin Y., Biochim. Biophys. Acta 1484(2-3), 2000
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Hiltunen JK, Qin Y., Biochim. Biophys. Acta 1484(2-3), 2000
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Mycomembrane and S-layer: two important structures of Corynebacterium glutamicum cell envelope with promising biotechnology applications.
Bayan N, Houssin C, Chami M, Leblon G., J. Biotechnol. 104(1-3), 2003
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Bayan N, Houssin C, Chami M, Leblon G., J. Biotechnol. 104(1-3), 2003
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A polyketide synthase catalyzes the last condensation step of mycolic acid biosynthesis in mycobacteria and related organisms.
Portevin D, De Sousa-D'Auria C, Houssin C, Grimaldi C, Chami M, Daffe M, Guilhot C., Proc. Natl. Acad. Sci. U.S.A. 101(1), 2003
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Acyl-CoA carboxylases (accD2 and accD3), together with a unique polyketide synthase (Cg-pks), are key to mycolic acid biosynthesis in Corynebacterianeae such as Corynebacterium glutamicum and Mycobacterium tuberculosis.
Gande R, Gibson KJ, Brown AK, Krumbach K, Dover LG, Sahm H, Shioyama S, Oikawa T, Besra GS, Eggeling L., J. Biol. Chem. 279(43), 2004
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Gande R, Gibson KJ, Brown AK, Krumbach K, Dover LG, Sahm H, Shioyama S, Oikawa T, Besra GS, Eggeling L., J. Biol. Chem. 279(43), 2004
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The acyl-AMP ligase FadD32 and AccD4-containing acyl-CoA carboxylase are required for the synthesis of mycolic acids and essential for mycobacterial growth: identification of the carboxylation product and determination of the acyl-CoA carboxylase components.
Portevin D, de Sousa-D'Auria C, Montrozier H, Houssin C, Stella A, Laneelle MA, Bardou F, Guilhot C, Daffe M., J. Biol. Chem. 280(10), 2005
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Molecular basis of human body odour formation: insights deduced from corynebacterial genome sequences
AUTHOR UNKNOWN, 2011
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Production of volatile aroma compounds by bacterial strains isolated from different surface-ripened French cheeses.
Deetae P, Bonnarme P, Spinnler HE, Helinck S., Appl. Microbiol. Biotechnol. 76(5), 2007
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Purification and characterization of an extracellular proline iminopeptidase from Corynebacterium variabilis NCDO 2101.
Gobbetti M, Smacchi E, Semeraro M, Fox PF, Lanciotti R, Cogan T., J. Appl. Microbiol. 90(3), 2001
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Sequence analysis identifies the proline dehydrogenase and delta 1-pyrroline-5-carboxylate dehydrogenase domains of the multifunctional Escherichia coli PutA protein.
Ling M, Allen SW, Wood JM., J. Mol. Biol. 243(5), 1994
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Genetic makeup of the Corynebacterium glutamicum LexA regulon deduced from comparative transcriptomics and in vitro DNA band shift assays.
Jochmann N, Kurze AK, Czaja LF, Brinkrolf K, Brune I, Huser AT, Hansmeier N, Puhler A, Borovok I, Tauch A., Microbiology (Reading, Engl.) 155(Pt 5), 2009
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Jochmann N, Kurze AK, Czaja LF, Brinkrolf K, Brune I, Huser AT, Hansmeier N, Puhler A, Borovok I, Tauch A., Microbiology (Reading, Engl.) 155(Pt 5), 2009
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Osmosensing and osmosignaling in Corynebacterium glutamicum.
Kramer R., Amino Acids 37(3), 2009
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Ectoine as a natural component of food: detection in red smear cheeses.
Klein J, Schwarz T, Lentzen G., J. Dairy Res. 74(4), 2007
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Klein J, Schwarz T, Lentzen G., J. Dairy Res. 74(4), 2007
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Potassium transport in corynebacterium glutamicum is facilitated by the putative channel protein CglK, which is essential for pH homeostasis and growth at acidic pH.
Follmann M, Becker M, Ochrombel I, Ott V, Kramer R, Marin K., J. Bacteriol. 191(9), 2009
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Ochrombel I, Ott L, Kramer R, Burkovski A, Marin K., Biochim. Biophys. Acta 1807(4), 2011
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USDA Database for the choline content of common foods
AUTHOR UNKNOWN, 2008
AUTHOR UNKNOWN, 2008
Osmoregulation in Corynebacterium glutamicum
AUTHOR UNKNOWN, 2005
AUTHOR UNKNOWN, 2005
Deletion of the genes encoding the MtrA-MtrB two-component system of Corynebacterium glutamicum has a strong influence on cell morphology, antibiotics susceptibility and expression of genes involved in osmoprotection.
Moker N, Brocker M, Schaffer S, Kramer R, Morbach S, Bott M., Mol. Microbiol. 54(2), 2004
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InterPro: the integrative protein signature database.
Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L, Finn RD, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Laugraud A, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Mulder N, Natale D, Orengo C, Quinn AF, Selengut JD, Sigrist CJ, Thimma M, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C., Nucleic Acids Res. 37(Database issue), 2008
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Catalytic mechanism of thiol peroxidase from Escherichia coli. Sulfenic acid formation and overoxidation of essential CYS61.
Baker LM, Poole LB., J. Biol. Chem. 278(11), 2003
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Redox-operated genetic switches: the SoxR and OxyR transcription factors.
Pomposiello PJ, Demple B., Trends Biotechnol. 19(3), 2001
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Adaptive response to oxidative stress: Bacteria, fungi, plants and animals.
Lushchak VI., Comp. Biochem. Physiol. C Toxicol. Pharmacol. 153(2), 2010
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Oxidative stress response and characterization of the oxyR-ahpC and furA-katG loci in Mycobacterium marinum.
Pagan-Ramos E, Song J, McFalone M, Mudd MH, Deretic V., J. Bacteriol. 180(18), 1998
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Pagan-Ramos E, Master SS, Pritchett CL, Reimschuessel R, Trucksis M, Timmins GS, Deretic V., J. Bacteriol. 188(7), 2006
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The bacterial LexA transcriptional repressor.
Butala M, Zgur-Bertok D, Busby SJ., Cell. Mol. Life Sci. 66(1), 2009
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Bacterial iron homeostasis.
Andrews SC, Robinson AK, Rodriguez-Quinones F., FEMS Microbiol. Rev. 27(2-3), 2003
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Oram JD, Reiter B., Biochim. Biophys. Acta 170(2), 1968
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Oram JD, Reiter B., Biochim. Biophys. Acta 170(2), 1968
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Ong SA, Neilands JB., J. Agric. Food Chem. 27(5), 1979
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Brown JS, Holden DW., Microbes Infect. 4(11), 2002
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Dertz EA, Stintzi A, Raymond KN., J. Biol. Inorg. Chem. 11(8), 2006
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The dhb operon of Bacillus subtilis encodes the biosynthetic template for the catecholic siderophore 2,3-dihydroxybenzoate-glycine-threonine trimeric ester bacillibactin.
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Iron and oxidative stress in bacteria.
Touati D., Arch. Biochem. Biophys. 373(1), 2000
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Touati D., Arch. Biochem. Biophys. 373(1), 2000
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The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamicum.
Brune I, Werner H, Huser AT, Kalinowski J, Puhler A, Tauch A., BMC Genomics 7(), 2006
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Brune I, Werner H, Huser AT, Kalinowski J, Puhler A, Tauch A., BMC Genomics 7(), 2006
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Cheese flavour formation by amino acid catabolism.
Yvon M, Rijnen L., Int. Dairy J. 11(4/7), 2001
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Yvon M, Rijnen L., Int. Dairy J. 11(4/7), 2001
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Identification and functional analysis of the gene encoding methionine-gamma-lyase in Brevibacterium linens.
Amarita F, Yvon M, Nardi M, Chambellon E, Delettre J, Bonnarme P., Appl. Environ. Microbiol. 70(12), 2004
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Conversion of methionine to thiols by lactococci, lactobacilli, and brevibacteria
Dias B, Weimer B., Appl. Environ. Microbiol. 64(9), 1998
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Smit G, Smit BA, Engels WJ., FEMS Microbiol. Rev. 29(3), 2005
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Smit G, Smit BA, Engels WJ., FEMS Microbiol. Rev. 29(3), 2005
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Formation of diacetyl and acetoin by Lactococcus lactis via aspartate catabolism.
Le Bars D, Yvon M., J. Appl. Microbiol. 104(1), 2008
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Changes in flavour and volatiles of full-fat and reduced- fat Cheddar cheeses during maturation.
Dimos A, Urbach GE, Miller AJ., Int. Dairy J. 6(10), 1996
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Dimos A, Urbach GE, Miller AJ., Int. Dairy J. 6(10), 1996
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The microflora of Tilsit cheese. Part 2. Development of a surface smear starter culture
AUTHOR UNKNOWN, 1997
AUTHOR UNKNOWN, 1997
Corynebacterium jeikeium endocarditis: a systematic overview spanning four decades.
Mookadam F, Cikes M, Baddour LM, Tleyjeh IM, Mookadam M., Eur. J. Clin. Microbiol. Infect. Dis. 25(6), 2006
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Mookadam F, Cikes M, Baddour LM, Tleyjeh IM, Mookadam M., Eur. J. Clin. Microbiol. Infect. Dis. 25(6), 2006
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Growth stimulation of Brevibacterium sp. by siderophores.
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Effect of Initial Oxygen Concentration on Diacetyl and Acetoin Production by Lactococcus lactis subsp. lactis biovar diacetylactis.
Bassit N, Boquien CY, Picque D, Corrieu G., Appl. Environ. Microbiol. 59(6), 1993
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Bassit N, Boquien CY, Picque D, Corrieu G., Appl. Environ. Microbiol. 59(6), 1993
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Time course and specificity of lipolysis in Swiss cheese.
Dherbecourt J, Bourlieu C, Maillard MB, Aubert-Frogerais L, Richoux R, Thierry A., J. Agric. Food Chem. 58(22), 2010
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Dherbecourt J, Bourlieu C, Maillard MB, Aubert-Frogerais L, Richoux R, Thierry A., J. Agric. Food Chem. 58(22), 2010
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Proteolysis, lipolysis, volatile compounds, texture, and flavor of Hispanico cheese made using frozen ewe milk curds pressed for different times.
Picon A, Gaya P, Fernandez-Garcia E, Rivas-Canedo A, Avila M, Nunez M., J. Dairy Sci. 93(7), 2010
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Picon A, Gaya P, Fernandez-Garcia E, Rivas-Canedo A, Avila M, Nunez M., J. Dairy Sci. 93(7), 2010
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Influence of microfiltration and adjunct culture on quality of Domiati cheese.
Awad S, Ahmed N, El Soda M., J. Dairy Sci. 93(5), 2010
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Awad S, Ahmed N, El Soda M., J. Dairy Sci. 93(5), 2010
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Comparative genomics identified two conserved DNA modules in a corynebacterial plasmid family present in clinical isolates of the opportunistic human pathogen Corynebacterium jeikeium.
Tauch A, Bischoff N, Puhler A, Kalinowski J., Plasmid 52(2), 2004
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Tauch A, Bischoff N, Puhler A, Kalinowski J., Plasmid 52(2), 2004
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AUTHOR UNKNOWN, 1985
Development of joint application strategies for two microbial gene finders.
McHardy AC, Goesmann A, Puhler A, Meyer F., Bioinformatics 20(10), 2004
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McHardy AC, Goesmann A, Puhler A, Meyer F., Bioinformatics 20(10), 2004
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A probabilistic method for identifying start codons in bacterial genomes.
Suzek BE, Ermolaeva MD, Schreiber M, Salzberg SL., Bioinformatics 17(12), 2001
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Suzek BE, Ermolaeva MD, Schreiber M, Salzberg SL., Bioinformatics 17(12), 2001
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REGANOR: a gene prediction server for prokaryotic genomes and a database of high quality gene predictions for prokaryotes.
Linke B, McHardy AC, Neuweger H, Krause L, Meyer F., Appl. Bioinformatics 5(3), 2006
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Linke B, McHardy AC, Neuweger H, Krause L, Meyer F., Appl. Bioinformatics 5(3), 2006
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DNAPlotter: circular and linear interactive genome visualization.
Carver T, Thomson N, Bleasby A, Berriman M, Parkhill J., Bioinformatics 25(1), 2008
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Carver T, Thomson N, Bleasby A, Berriman M, Parkhill J., Bioinformatics 25(1), 2008
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CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks.
Schneider J, Vorholter FJ, Trost E, Blom J, Musa YR, Neuweger H, Niehaus K, Schatschneider S, Tauch A, Goesmann A., Genet. Mol. Res. 9(3), 2010
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Schneider J, Vorholter FJ, Trost E, Blom J, Musa YR, Neuweger H, Niehaus K, Schatschneider S, Tauch A, Goesmann A., Genet. Mol. Res. 9(3), 2010
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Integration of CellDesigner and SABIO-RK.
Funahashi A, Jouraku A, Matsuoka Y, Kitano H., In Silico Biol. (Gedrukt) 7(2 Suppl), 2007
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Funahashi A, Jouraku A, Matsuoka Y, Kitano H., In Silico Biol. (Gedrukt) 7(2 Suppl), 2007
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