Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation

Schröder J, Maus I, Trost E, Tauch A (2011)
BMC Genomics 12(1): 545.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
OA
Abstract / Bemerkung
Corynebacterium variabile is part of the complex microflora on the surface of smear-ripened cheeses and contributes to the development of flavor and textural properties during cheese ripening. Still little is known about the metabolic processes and microbial interactions during the production of smear-ripened cheeses. Therefore, the gene repertoire contributing to the lifestyle of the cheese isolate C. variabile DSM 44702 was deduced from the complete genome sequence to get a better understanding of this industrial process. The chromosome of C. variabile DSM 44702 is composed of 3, 433, 007 bp and contains 3, 071 protein-coding regions. A comparative analysis of this gene repertoire with that of other corynebacteria detected 1, 534 predicted genes to be specific for the cheese isolate. These genes might contribute to distinct metabolic capabilities of C. variabile, as several of them are associated with metabolic functions in cheese habitats by playing roles in the utilization of alternative carbon and sulphur sources, in amino acid metabolism, and fatty acid degradation. Relevant C. variabile genes confer the capability to catabolize gluconate, lactate, propionate, taurine, and gamma-aminobutyric acid and to utilize external caseins. In addition, C. variabile is equipped with several siderophore biosynthesis gene clusters for iron acquisition and an exceptional repertoire of AraC-regulated iron uptake systems. Moreover, C. variabile can produce acetoin, butanediol, and methanethiol, which are important flavor compounds in smear-ripened cheeses. The genome sequence of C. variabile provides detailed insights into the distinct metabolic features of this bacterium, implying a strong adaption to the iron-depleted cheese surface habitat. By combining in silico data obtained from the genome annotation with previous experimental knowledge, occasional observations on genes that are involved in the complex metabolic capacity of C. variabile were integrated into a global view on the lifestyle of this species.
Erscheinungsjahr
2011
Zeitschriftentitel
BMC Genomics
Band
12
Ausgabe
1
Art.-Nr.
545
ISSN
1471-2164
Finanzierungs-Informationen
Open-Access-Publikationskosten wurden durch die Deutsche Forschungsgemeinschaft und die Universität Bielefeld gefördert.
Page URI
https://pub.uni-bielefeld.de/record/2442587

Zitieren

Schröder J, Maus I, Trost E, Tauch A. Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation. BMC Genomics. 2011;12(1): 545.
Schröder, J., Maus, I., Trost, E., & Tauch, A. (2011). Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation. BMC Genomics, 12(1), 545. https://doi.org/10.1186/1471-2164-12-545
Schröder, Jasmin, Maus, Irena, Trost, Eva, and Tauch, Andreas. 2011. “Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation”. BMC Genomics 12 (1): 545.
Schröder, J., Maus, I., Trost, E., and Tauch, A. (2011). Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation. BMC Genomics 12:545.
Schröder, J., et al., 2011. Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation. BMC Genomics, 12(1): 545.
J. Schröder, et al., “Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation”, BMC Genomics, vol. 12, 2011, : 545.
Schröder, J., Maus, I., Trost, E., Tauch, A.: Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation. BMC Genomics. 12, : 545 (2011).
Schröder, Jasmin, Maus, Irena, Trost, Eva, and Tauch, Andreas. “Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation”. BMC Genomics 12.1 (2011): 545.
Alle Dateien verfügbar unter der/den folgenden Lizenz(en):
Copyright Statement:
Dieses Objekt ist durch das Urheberrecht und/oder verwandte Schutzrechte geschützt. [...]
Volltext(e)
Access Level
OA Open Access
Zuletzt Hochgeladen
2019-09-06T08:57:59Z
MD5 Prüfsumme
8665c7a332128f12d07ec2e552ed48c4


25 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Otitis in a cat associated with Corynebacterium provencense.
Kittl S, Brodard I, Rychener L, Jores J, Roosje P, Gobeli Brawand S., BMC Vet Res 14(1), 2018
PMID: 29940943
Insight of Genus Corynebacterium: Ascertaining the Role of Pathogenic and Non-pathogenic Species.
Oliveira A, Oliveira LC, Aburjaile F, Benevides L, Tiwari S, Jamal SB, Silva A, Figueiredo HCP, Ghosh P, Portela RW, De Carvalho Azevedo VA, Wattam AR., Front Microbiol 8(), 2017
PMID: 29075239
Diversity within Italian Cheesemaking Brine-Associated Bacterial Communities Evidenced by Massive Parallel 16S rRNA Gene Tag Sequencing.
Marino M, Innocente N, Maifreni M, Mounier J, Cobo-Díaz JF, Coton E, Carraro L, Cardazzo B., Front Microbiol 8(), 2017
PMID: 29163411
Draft Genome Sequence of Corynebacterium variabile Mu292, Isolated from Munster, a French Smear-Ripened Cheese.
Dugat-Bony E, Sarthou AS, Loux V, Vidal M, Bonnarme P, Irlinger F, Layec S., Genome Announc 4(4), 2016
PMID: 27445372
Chassis organism from Corynebacterium glutamicum--a top-down approach to identify and delete irrelevant gene clusters.
Unthan S, Baumgart M, Radek A, Herbst M, Siebert D, Brühl N, Bartsch A, Bott M, Wiechert W, Marin K, Hans S, Krämer R, Seibold G, Frunzke J, Kalinowski J, Rückert C, Wendisch VF, Noack S., Biotechnol J 10(2), 2015
PMID: 25139579
Revisiting Corynebacterium glyciniphilum (ex Kubota et al., 1972) sp. nov., nom. rev., isolated from putrefied banana.
Al-Dilaimi A, Bednarz H, Lömker A, Niehaus K, Kalinowski J, Rückert C., Int J Syst Evol Microbiol 65(pt 1), 2015
PMID: 25323597
Growth and adaptation of microorganisms on the cheese surface.
Monnet C, Landaud S, Bonnarme P, Swennen D., FEMS Microbiol Lett 362(1), 2015
PMID: 25790503
Genome sequence of the squalene-degrading bacterium Corynebacterium terpenotabidum type strain Y-11(T) (= DSM 44721(T)).
Rückert C, Albersmeier A, Al-Dilaimi A, Bednarz H, Niehaus K, Szczepanowski R, Kalinowski J., Stand Genomic Sci 9(3), 2014
PMID: 25197436
Construction of a dairy microbial genome catalog opens new perspectives for the metagenomic analysis of dairy fermented products.
Almeida M, Hébert A, Abraham AL, Rasmussen S, Monnet C, Pons N, Delbès C, Loux V, Batto JM, Leonard P, Kennedy S, Ehrlich SD, Pop M, Montel MC, Irlinger F, Renault P., BMC Genomics 15(), 2014
PMID: 25496341
The pan-genome of the animal pathogen Corynebacterium pseudotuberculosis reveals differences in genome plasticity between the biovar ovis and equi strains.
Soares SC, Silva A, Trost E, Blom J, Ramos R, Carneiro A, Ali A, Santos AR, Pinto AC, Diniz C, Barbosa EG, Dorella FA, Aburjaile F, Rocha FS, Nascimento KK, Guimarães LC, Almeida S, Hassan SS, Bakhtiar SM, Pereira UP, Abreu VA, Schneider MP, Miyoshi A, Tauch A, Azevedo V., PLoS One 8(1), 2013
PMID: 23342011
Nucleic acid-based approaches to investigate microbial-related cheese quality defects.
O'Sullivan DJ, Giblin L, McSweeney PL, Sheehan JJ, Cotter PD., Front Microbiol 4(), 2013
PMID: 23346082
Multifactorial diversity sustains microbial community stability.
Erkus O, de Jager VC, Spus M, van Alen-Boerrigter IJ, van Rijswijck IM, Hazelwood L, Janssen PW, van Hijum SA, Kleerebezem M, Smid EJ., ISME J 7(11), 2013
PMID: 23823494
The complex microbiota of raw milk.
Quigley L, O'Sullivan O, Stanton C, Beresford TP, Ross RP, Fitzgerald GF, Cotter PD., FEMS Microbiol Rev 37(5), 2013
PMID: 23808865
Whole-Genome Sequence of the Clinical Strain Corynebacterium argentoratense DSM 44202, Isolated from a Human Throat Specimen.
Bomholt C, Glaub A, Gravermann K, Albersmeier A, Brinkrolf K, Rückert C, Tauch A., Genome Announc 1(5), 2013
PMID: 24092787
Growth of aerobic ripening bacteria at the cheese surface is limited by the availability of iron.
Monnet C, Back A, Irlinger F., Appl Environ Microbiol 78(9), 2012
PMID: 22367081
Survey of the Applications of NGS to Whole-Genome Sequencing and Expression Profiling.
Lim JS, Choi BS, Lee JS, Shin C, Yang TJ, Rhee JS, Lee JS, Choi IY., Genomics Inform 10(1), 2012
PMID: 23105922
Draft genome sequence of Corynebacterium bovis DSM 20582, which causes clinical mastitis in dairy cows.
Schröder J, Glaub A, Schneider J, Trost E, Tauch A., J Bacteriol 194(16), 2012
PMID: 22843578
Draft genome sequence of Turicella otitidis ATCC 51513, isolated from middle ear fluid from a child with otitis media.
Brinkrolf K, Schneider J, Knecht M, Rückert C, Tauch A., J Bacteriol 194(21), 2012
PMID: 23045487

168 References

Daten bereitgestellt von Europe PubMed Central.


AUTHOR UNKNOWN, 2000
Recent advances in cheese microbiology.
Beresford TP, Fitzsimons NA, Brennan NL, Cogan TM., Int. Dairy J. 11(4/7), 2001
PMID: IND23252803
Bacteria surface-ripened cheeses
AUTHOR UNKNOWN, 1993
Corynebacterium mooreparkense sp. nov. and Corynebacterium casei sp. nov., isolated from the surface of a smear-ripened cheese.
Brennan NM, Brown R, Goodfellow M, Ward AC, Beresford TP, Simpson PJ, Fox PF, Cogan TM., Int. J. Syst. Evol. Microbiol. 51(Pt 3), 2001
PMID: 11411705
Surface microbial consortia from Livarot, a French smear-ripened cheese.
Larpin-Laborde S, Imran M, Bonaiti C, Bora N, Gelsomino R, Goerges S, Irlinger F, Goodfellow M, Ward AC, Vancanneyt M, Swings J, Scherer S, Gueguen M, Desmasures N., Can. J. Microbiol. 57(8), 2011
PMID: 21815832
The interaction between yeasts and bacteria in dairy environments.
Viljoen BC., Int. J. Food Microbiol. 69(1-2), 2001
PMID: 11589558
Interactions between yeasts and bacteria in the smear surface-ripened cheeses.
Corsetti A, Rossi J, Gobbetti M., Int. J. Food Microbiol. 69(1-2), 2001
PMID: 11589547
The surface flora of bacterial smear-ripened cheeses from cow's and goat's milk.
Bockelmann W, Hoppe-Seyler T., Int. Dairy J. 11(4/7), 2001
PMID: IND23252812
Identification of yeasts and coryneform bacteria from the surface microflora of brick cheeses.
Valdes-Stauber N, Scherer S, Seiler H., Int. J. Food Microbiol. 34(2), 1997
PMID: 9039559
Surface microflora of four smear-ripened cheeses.
Mounier J, Gelsomino R, Goerges S, Vancanneyt M, Vandemeulebroecke K, Hoste B, Scherer S, Swings J, Fitzgerald GF, Cogan TM., Appl. Environ. Microbiol. 71(11), 2005
PMID: 16269673
Quantitative detection of Corynebacterium casei in cheese by real-time PCR.
Monnet C, Correia K, Sarthou AS, Irlinger F., Appl. Environ. Microbiol. 72(11), 2006
PMID: 16950905
Stability of the biodiversity of the surface consortia of Gubbeen, a red-smear cheese.
Rea MC, Gorges S, Gelsomino R, Brennan NM, Mounier J, Vancanneyt M, Scherer S, Swings J, Cogan TM., J. Dairy Sci. 90(5), 2007
PMID: 17430918
Arthrobacter bergerei sp. nov. and Arthrobacter arilaitensis sp. nov., novel coryneform species isolated from the surfaces of cheeses.
Irlinger F, Bimet F, Delettre J, Lefevre M, Grimont PA., Int. J. Syst. Evol. Microbiol. 55(Pt 1), 2005
PMID: 15653918
Genomics of Actinobacteria: tracing the evolutionary history of an ancient phylum.
Ventura M, Canchaya C, Tauch A, Chandra G, Fitzgerald GF, Chater KF, van Sinderen D., Microbiol. Mol. Biol. Rev. 71(3), 2007
PMID: 17804669
Corynebacterium resistens sp. nov., a new multidrug-resistant coryneform bacterium isolated from human infections.
Otsuka Y, Kawamura Y, Koyama T, Iihara H, Ohkusu K, Ezaki T., J. Clin. Microbiol. 43(8), 2005
PMID: 16081900
Biodiversity of the bacterial flora on the surface of a smear cheese.
Brennan NM, Ward AC, Beresford TP, Fox PF, Goodfellow M, Cogan TM., Appl. Environ. Microbiol. 68(2), 2002
PMID: 11823224
rpoB gene sequencing for identification of Corynebacterium species.
Khamis A, Raoult D, La Scola B., J. Clin. Microbiol. 42(9), 2004
PMID: 15364970
Corynebacterium mooreparkense, a later heterotypic synonym of Corynebacterium variabile.
Gelsomino R, Vancanneyt M, Snauwaert C, Vandemeulebroecke K, Hoste B, Cogan TM, Swings J., Int. J. Syst. Evol. Microbiol. 55(Pt 3), 2005
PMID: 15879244
r2cat: synteny plots and comparative assembly
AUTHOR UNKNOWN, 2011
Consed: a graphical tool for sequence finishing.
Gordon D, Abajian C, Green P., Genome Res. 8(3), 1998
PMID: 9521923
GenDB--an open source genome annotation system for prokaryote genomes.
Meyer F, Goesmann A, McHardy AC, Bartels D, Bekel T, Clausen J, Kalinowski J, Linke B, Rupp O, Giegerich R, Puhler A., Nucleic Acids Res. 31(8), 2003
PMID: 12682369
Selection for chromosome architecture in bacteria.
Hendrickson H, Lawrence JG., J. Mol. Evol. 62(5), 2006
PMID: 16612541
Essentiality, not expressiveness, drives gene-strand bias in bacteria.
Rocha EP, Danchin A., Nat. Genet. 34(4), 2003
PMID: 12847524
Comparative analysis of the Corynebacterium glutamicum group and complete genome sequence of strain R.
Yukawa H, Omumasaba CA, Nonaka H, Kos P, Okai N, Suzuki N, Suda M, Tsuge Y, Watanabe J, Ikeda Y, Vertes AA, Inui M., Microbiology (Reading, Engl.) 153(Pt 4), 2007
PMID: 17379713
High-throughput transposon mutagenesis of Corynebacterium glutamicum and construction of a single-gene disruptant mutant library.
Suzuki N, Okai N, Nonaka H, Tsuge Y, Inui M, Yukawa H., Appl. Environ. Microbiol. 72(5), 2006
PMID: 16672528
EDGAR: a software framework for the comparative analysis of prokaryotic genomes.
Blom J, Albaum SP, Doppmeier D, Puhler A, Vorholter FJ, Zakrzewski M, Goesmann A., BMC Bioinformatics 10(), 2009
PMID: 19457249
The lifestyle of Corynebacterium urealyticum derived from its complete genome sequence established by pyrosequencing.
Tauch A, Trost E, Tilker A, Ludewig U, Schneiker S, Goesmann A, Arnold W, Bekel T, Brinkrolf K, Brune I, Gotker S, Kalinowski J, Kamp PB, Lobo FP, Viehoever P, Weisshaar B, Soriano F, Droge M, Puhler A., J. Biotechnol. 136(1-2), 2008
PMID: 18367281
Genomic and functional analyses of Rhodococcus equi phages ReqiPepy6, ReqiPoco6, ReqiPine5, and ReqiDocB7.
Summer EJ, Liu M, Gill JJ, Grant M, Chan-Cortes TN, Ferguson L, Janes C, Lange K, Bertoli M, Moore C, Orchard RC, Cohen ND, Young R., Appl. Environ. Microbiol. 77(2), 2010
PMID: 21097585
Comparative genome analysis of Listeria bacteriophages reveals extensive mosaicism, programmed translational frameshifting, and a novel prophage insertion site.
Dorscht J, Klumpp J, Bielmann R, Schmelcher M, Born Y, Zimmer M, Calendar R, Loessner MJ., J. Bacteriol. 191(23), 2009
PMID: 19783628
Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora.
Tauch A, Kaiser O, Hain T, Goesmann A, Weisshaar B, Albersmeier A, Bekel T, Bischoff N, Brune I, Chakraborty T, Kalinowski J, Meyer F, Rupp O, Schneiker S, Viehoever P, Puhler A., J. Bacteriol. 187(13), 2005
PMID: 15968079
Redirection of pyruvate pathway of lactic acid bacteria to improve cheese quality
AUTHOR UNKNOWN, 2009
The complete genome sequence and analysis of Corynebacterium diphtheriae NCTC13129.
Cerdeno-Tarraga AM, Efstratiou A, Dover LG, Holden MT, Pallen M, Bentley SD, Besra GS, Churcher C, James KD, De Zoysa A, Chillingworth T, Cronin A, Dowd L, Feltwell T, Hamlin N, Holroyd S, Jagels K, Moule S, Quail MA, Rabbinowitsch E, Rutherford KM, Thomson NR, Unwin L, Whitehead S, Barrell BG, Parkhill J., Nucleic Acids Res. 31(22), 2003
PMID: 14602910
The respiratory chain of Corynebacterium glutamicum.
Bott M, Niebisch A., J. Biotechnol. 104(1-3), 2003
PMID: 12948635
Characterization of the cydAB-encoded cytochrome bd oxidase from Mycobacterium smegmatis.
Kana BD, Weinstein EA, Avarbock D, Dawes SS, Rubin H, Mizrahi V., J. Bacteriol. 183(24), 2001
PMID: 11717265
The Carbohydrate-Active EnZymes database (CAZy): an expert resource for Glycogenomics.
Cantarel BL, Coutinho PM, Rancurel C, Bernard T, Lombard V, Henrissat B., Nucleic Acids Res. 37(Database issue), 2008
PMID: 18838391
Profile hidden Markov models.
Eddy SR., Bioinformatics 14(9), 1998
PMID: 9918945
The Pfam protein families database.
Finn RD, Mistry J, Tate J, Coggill P, Heger A, Pollington JE, Gavin OL, Gunasekaran P, Ceric G, Forslund K, Holm L, Sonnhammer EL, Eddy SR, Bateman A., Nucleic Acids Res. 38(Database issue), 2009
PMID: 19920124
Structural and sequence-based classification of glycoside hydrolases.
Henrissat B, Davies G., Curr. Opin. Struct. Biol. 7(5), 1997
PMID: 9345621
An evolving hierarchical family classification for glycosyltransferases.
Coutinho PM, Deleury E, Davies GJ, Henrissat B., J. Mol. Biol. 328(2), 2003
PMID: 12691742
A hierarchical classification of polysaccharide lyases for glycogenomics.
Lombard V, Bernard T, Rancurel C, Brumer H, Coutinho PM, Henrissat B., Biochem. J. 432(3), 2010
PMID: 20925655
Carbohydrate-binding modules: fine-tuning polysaccharide recognition.
Boraston AB, Bolam DN, Gilbert HJ, Davies GJ., Biochem. J. 382(Pt 3), 2004
PMID: 15214846
Determination of free amino acids in cheeses from the Czech market
AUTHOR UNKNOWN, 2009
Isoleucine uptake in Corynebacterium glutamicum ATCC 13032 is directed by the brnQ gene product.
Tauch A, Hermann T, Burkovski A, Kramer R, Puhler A, Kalinowski J., Arch. Microbiol. 169(4), 1998
PMID: 9531631
Molecular analysis of the Corynebacterium glutamicum lysl gene involved in lysine uptake.
Seep-Feldhaus AH, Kalinowski J, Puhler A., Mol. Microbiol. 5(12), 1991
PMID: 1667221
The ncgl1108 (PheP (Cg)) gene encodes a new L-Phe transporter in Corynebacterium glutamicum.
Zhao Z, Ding JY, Li T, Zhou NY, Liu SJ., Appl. Microbiol. Biotechnol. 90(6), 2011
PMID: 21468701
Structure of the gluABCD cluster encoding the glutamate uptake system of Corynebacterium glutamicum.
Kronemeyer W, Peekhaus N, Kramer R, Sahm H, Eggeling L., J. Bacteriol. 177(5), 1995
PMID: 7868586
Methionine uptake in Corynebacterium glutamicum by MetQNI and by MetPS, a novel methionine and alanine importer of the NSS neurotransmitter transporter family
AUTHOR UNKNOWN, 2008
The Sec translocase.
du Plessis DJ, Nouwen N, Driessen AJ., Biochim. Biophys. Acta 1808(3), 2010
PMID: 20801097
A new twist on an old pathway--accessory Sec [corrected] systems.
Rigel NW, Braunstein M., Mol. Microbiol. 69(2), 2008
PMID: 18544071
Biogenesis of inner membrane proteins in Escherichia coli.
Luirink J, von Heijne G, Houben E, de Gier JW., Annu. Rev. Microbiol. 59(), 2005
PMID: 16153172
A neural network method for identification of prokaryotic and eukaryotic signal peptides and prediction of their cleavage sites.
Nielsen H, Engelbrecht J, Brunak S, von Heijne G., Int J Neural Syst 8(5-6), 1997
PMID: 10065837
DOLOP--database of bacterial lipoproteins.
Madan Babu M, Sankaran K., Bioinformatics 18(4), 2002
PMID: 12016064
Predicting transmembrane protein topology with a hidden Markov model: application to complete genomes.
Krogh A, Larsson B, von Heijne G, Sonnhammer EL., J. Mol. Biol. 305(3), 2001
PMID: 11152613
A genomic perspective on protein families.
Tatusov RL, Koonin EV, Lipman DJ., Science 278(5338), 1997
PMID: 9381173
Sequence and phylogenetic analyses of the twin-arginine targeting (Tat) protein export system.
Yen MR, Tseng YH, Nguyen EH, Wu LF, Saier MH Jr., Arch. Microbiol. 177(6), 2002
PMID: 12029389
Prediction of twin-arginine signal peptides.
Bendtsen JD, Nielsen H, Widdick D, Palmer T, Brunak S., BMC Bioinformatics 6(), 2005
PMID: 15992409
Prokaryotic utilization of the twin-arginine translocation pathway: a genomic survey.
Dilks K, Rose RW, Hartmann E, Pohlschroder M., J. Bacteriol. 185(4), 2003
PMID: 12562823
The TetR family of transcriptional repressors.
Ramos JL, Martinez-Bueno M, Molina-Henares AJ, Teran W, Watanabe K, Zhang X, Gallegos MT, Brennan R, Tobes R., Microbiol. Mol. Biol. Rev. 69(2), 2005
PMID: 15944459
The transcriptional regulatory network of the amino acid producer Corynebacterium glutamicum.
Brinkrolf K, Brune I, Tauch A., J. Biotechnol. 129(2), 2006
PMID: 17227685
The DNA-binding domain as a functional indicator: the case of the AraC/XylS family of transcription factors.
Ibarra JA, Perez-Rueda E, Segovia L, Puente JL., Genetica 133(1), 2007
PMID: 17712603
Ultrafast pyrosequencing of Corynebacterium kroppenstedtii DSM44385 revealed insights into the physiology of a lipophilic corynebacterium that lacks mycolic acids.
Tauch A, Schneider J, Szczepanowski R, Tilker A, Viehoever P, Gartemann KH, Arnold W, Blom J, Brinkrolf K, Brune I, Gotker S, Weisshaar B, Goesmann A, Droge M, Puhler A., J. Biotechnol. 136(1-2), 2008
PMID: 18430482
The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence.
Trost E, Ott L, Schneider J, Schroder J, Jaenicke S, Goesmann A, Husemann P, Stoye J, Dorella FA, Rocha FS, Soares Sde C, D'Afonseca V, Miyoshi A, Ruiz J, Silva A, Azevedo V, Burkovski A, Guiso N, Join-Lambert OF, Kayal S, Tauch A., BMC Genomics 11(), 2010
PMID: 21192786
Content of taurine in Apulian Cacioricotta goat's cheese.
Pasqualone A, Caponio F, Alloggio V, Gomes T., Eur. Food Res. Technol. 211(3), 2000
PMID: IND22299417
Synthesis of gamma-aminobutyric acid by lactic acid bacteria isolated from a variety of Italian cheeses.
Siragusa S, De Angelis M, Di Cagno R, Rizzello CG, Coda R, Gobbetti M., Appl. Environ. Microbiol. 73(22), 2007
PMID: 17890341
Production of gamma-aminobutyric acid by cheese starters during cheese ripening.
Nomura M, Kimoto H, Someya Y, Furukawa S, Suzuki I., J. Dairy Sci. 81(6), 1998
PMID: 9684157
Biochemical pathways for the production of flavour compounds in cheeses during ripening: A review
AUTHOR UNKNOWN, 2000
Flavour compound production and citrate metabolism in Lactococcus rhamnosus ATCC 7469
AUTHOR UNKNOWN, 1998
Citric acid metabolism in hetero- and homofermentative lactic acid bacteria.
Drinan DF, Robin S, Cogan TM., Appl. Environ. Microbiol. 31(4), 1976
PMID: 5054
Citrate metabolism in lactic acid bacteria
AUTHOR UNKNOWN, 1993
Bacterial surface-ripened cheeses
AUTHOR UNKNOWN, 2004
Growth characteristics of Brevibacterium, Corynebacterium, Microbacterium, and Staphylococcus spp. isolated from surface-ripened cheese.
Mounier J, Rea MC, O'Connor PM, Fitzgerald GF, Cogan TM., Appl. Environ. Microbiol. 73(23), 2007
PMID: 17921266
Content of taurine and other free amino acids in milk of goats bred in Italy
AUTHOR UNKNOWN, 1998
Determinations of taurine in milk and infant formula diets.
Erbersdobler HF, Trautwein E, Greulich HG., Eur. J. Pediatr. 142(2), 1984
PMID: 6332023
The transcriptional regulator SsuR activates expression of the Corynebacterium glutamicum sulphonate utilization genes in the absence of sulphate.
Koch DJ, Ruckert C, Albersmeier A, Huser AT, Tauch A, Puhler A, Kalinowski J., Mol. Microbiol. 58(2), 2005
PMID: 16194234
Enzymatic and structural aspects on glutamate decarboxylase
AUTHOR UNKNOWN, 2000
The Metabolism and Functions of [gamma]-Aminobutyric Acid.
Bown AW, Shelp BJ., Plant Physiol. 115(1), 1997
PMID: 12223787
Gene context analysis in the Integrated Microbial Genomes (IMG) data management system.
Mavromatis K, Chu K, Ivanova N, Hooper SD, Markowitz VM, Kyrpides NC., PLoS ONE 4(11), 2009
PMID: 19956731
Structure and function of the LysR-type transcriptional regulator (LTTR) family proteins.
Maddocks SE, Oyston PC., Microbiology (Reading, Engl.) 154(Pt 12), 2008
PMID: 19047729
Nitrate and nitrite content of Greek cheeses.
Kyriakidis NB, Tarantili-Georgiou K, Tsani-Batzaka E., J Food Compost Anal 10(4), 1997
PMID: IND21639010
Structure and transport mechanism of the bacterial oxalate transporter OxlT.
Hirai T, Subramaniam S., Biophys. J. 87(5), 2004
PMID: 15339805
Effects of switching from whole to low-fat/fat-free milk in public schools - New York city, 2004-2009
AUTHOR UNKNOWN, 2010
The arthrobacter arilaitensis Re117 genome sequence reveals its genetic adaptation to the surface of cheese.
Monnet C, Loux V, Gibrat JF, Spinnler E, Barbe V, Vacherie B, Gavory F, Gourbeyre E, Siguier P, Chandler M, Elleuch R, Irlinger F, Vallaeys T., PLoS ONE 5(11), 2010
PMID: 21124797
Production of flavour compounds from fat during cheese ripening by action of lipases and esterases.
Wolf IV, Meinardi CA, Zalazar CA., Protein Pept. Lett. 16(10), 2009
PMID: 19508177
CDD: a Conserved Domain Database for the functional annotation of proteins.
Marchler-Bauer A, Lu S, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Lu F, Marchler GH, Mullokandov M, Omelchenko MV, Robertson CL, Song JS, Thanki N, Yamashita RA, Zhang D, Zhang N, Zheng C, Bryant SH., Nucleic Acids Res. 39(Database issue), 2010
PMID: 21109532
The Pks13/FadD32 crosstalk for the biosynthesis of mycolic acids in Mycobacterium tuberculosis.
Gavalda S, Leger M, van der Rest B, Stella A, Bardou F, Montrozier H, Chalut C, Burlet-Schiltz O, Marrakchi H, Daffe M, Quemard A., J. Biol. Chem. 284(29), 2009
PMID: 19436070
beta-oxidation - strategies for the metabolism of a wide variety of acyl-CoA esters.
Hiltunen JK, Qin Y., Biochim. Biophys. Acta 1484(2-3), 2000
PMID: 10760462
A polyketide synthase catalyzes the last condensation step of mycolic acid biosynthesis in mycobacteria and related organisms.
Portevin D, De Sousa-D'Auria C, Houssin C, Grimaldi C, Chami M, Daffe M, Guilhot C., Proc. Natl. Acad. Sci. U.S.A. 101(1), 2003
PMID: 14695899
Molecular basis of human body odour formation: insights deduced from corynebacterial genome sequences
AUTHOR UNKNOWN, 2011
Production of volatile aroma compounds by bacterial strains isolated from different surface-ripened French cheeses.
Deetae P, Bonnarme P, Spinnler HE, Helinck S., Appl. Microbiol. Biotechnol. 76(5), 2007
PMID: 17701035
Purification and characterization of an extracellular proline iminopeptidase from Corynebacterium variabilis NCDO 2101.
Gobbetti M, Smacchi E, Semeraro M, Fox PF, Lanciotti R, Cogan T., J. Appl. Microbiol. 90(3), 2001
PMID: 11298241
Genetic makeup of the Corynebacterium glutamicum LexA regulon deduced from comparative transcriptomics and in vitro DNA band shift assays.
Jochmann N, Kurze AK, Czaja LF, Brinkrolf K, Brune I, Huser AT, Hansmeier N, Puhler A, Borovok I, Tauch A., Microbiology (Reading, Engl.) 155(Pt 5), 2009
PMID: 19372162
Ectoine as a natural component of food: detection in red smear cheeses.
Klein J, Schwarz T, Lentzen G., J. Dairy Res. 74(4), 2007
PMID: 17961287
Impact of improved potassium accumulation on pH homeostasis, membrane potential adjustment and survival of Corynebacterium glutamicum.
Ochrombel I, Ott L, Kramer R, Burkovski A, Marin K., Biochim. Biophys. Acta 1807(4), 2011
PMID: 21295539
USDA Database for the choline content of common foods
AUTHOR UNKNOWN, 2008
Osmoregulation in Corynebacterium glutamicum
AUTHOR UNKNOWN, 2005
InterPro: the integrative protein signature database.
Hunter S, Apweiler R, Attwood TK, Bairoch A, Bateman A, Binns D, Bork P, Das U, Daugherty L, Duquenne L, Finn RD, Gough J, Haft D, Hulo N, Kahn D, Kelly E, Laugraud A, Letunic I, Lonsdale D, Lopez R, Madera M, Maslen J, McAnulla C, McDowall J, Mistry J, Mitchell A, Mulder N, Natale D, Orengo C, Quinn AF, Selengut JD, Sigrist CJ, Thimma M, Thomas PD, Valentin F, Wilson D, Wu CH, Yeats C., Nucleic Acids Res. 37(Database issue), 2008
PMID: 18940856
Redox-operated genetic switches: the SoxR and OxyR transcription factors.
Pomposiello PJ, Demple B., Trends Biotechnol. 19(3), 2001
PMID: 11179804
Adaptive response to oxidative stress: Bacteria, fungi, plants and animals.
Lushchak VI., Comp. Biochem. Physiol. C Toxicol. Pharmacol. 153(2), 2010
PMID: 20959147
Oxidative stress response and characterization of the oxyR-ahpC and furA-katG loci in Mycobacterium marinum.
Pagan-Ramos E, Song J, McFalone M, Mudd MH, Deretic V., J. Bacteriol. 180(18), 1998
PMID: 9733688
Molecular and physiological effects of mycobacterial oxyR inactivation.
Pagan-Ramos E, Master SS, Pritchett CL, Reimschuessel R, Trucksis M, Timmins GS, Deretic V., J. Bacteriol. 188(7), 2006
PMID: 16547055
The bacterial LexA transcriptional repressor.
Butala M, Zgur-Bertok D, Busby SJ., Cell. Mol. Life Sci. 66(1), 2009
PMID: 18726173
Bacterial iron homeostasis.
Andrews SC, Robinson AK, Rodriguez-Quinones F., FEMS Microbiol. Rev. 27(2-3), 2003
PMID: 12829269
Inhibition of bacteria by lactoferrin and other iron-chelating agents.
Oram JD, Reiter B., Biochim. Biophys. Acta 170(2), 1968
PMID: 4974829
Siderophores in microbially processed cheese.
Ong SA, Neilands JB., J. Agric. Food Chem. 27(5), 1979
PMID: 161915
Iron acquisition by Gram-positive bacterial pathogens.
Brown JS, Holden DW., Microbes Infect. 4(11), 2002
PMID: 12361915
Siderophore-mediated iron transport in Bacillus subtilis and Corynebacterium glutamicum.
Dertz EA, Stintzi A, Raymond KN., J. Biol. Inorg. Chem. 11(8), 2006
PMID: 16912897
Iron uptake by Escherichia coli.
Braun V., Front. Biosci. 8(), 2003
PMID: 12957834
Iron and oxidative stress in bacteria.
Touati D., Arch. Biochem. Biophys. 373(1), 2000
PMID: 10620317
Cheese flavour formation by amino acid catabolism.
Yvon M, Rijnen L., Int. Dairy J. 11(4/7), 2001
PMID: IND23252783
Identification and functional analysis of the gene encoding methionine-gamma-lyase in Brevibacterium linens.
Amarita F, Yvon M, Nardi M, Chambellon E, Delettre J, Bonnarme P., Appl. Environ. Microbiol. 70(12), 2004
PMID: 15574935
Conversion of methionine to thiols by lactococci, lactobacilli, and brevibacteria
Dias B, Weimer B., Appl. Environ. Microbiol. 64(9), 1998
PMID: 9726877
Flavour formation by lactic acid bacteria and biochemical flavour profiling of cheese products.
Smit G, Smit BA, Engels WJ., FEMS Microbiol. Rev. 29(3), 2005
PMID: 15935512
Formation of diacetyl and acetoin by Lactococcus lactis via aspartate catabolism.
Le Bars D, Yvon M., J. Appl. Microbiol. 104(1), 2008
PMID: 17850313
The microflora of Tilsit cheese. Part 2. Development of a surface smear starter culture
AUTHOR UNKNOWN, 1997
Corynebacterium jeikeium endocarditis: a systematic overview spanning four decades.
Mookadam F, Cikes M, Baddour LM, Tleyjeh IM, Mookadam M., Eur. J. Clin. Microbiol. Infect. Dis. 25(6), 2006
PMID: 16767481
Growth stimulation of Brevibacterium sp. by siderophores.
Noordman WH, Reissbrodt R, Bongers RS, Rademaker JL, Bockelmann W, Smit G., J. Appl. Microbiol. 101(3), 2006
PMID: 16907814
Time course and specificity of lipolysis in Swiss cheese.
Dherbecourt J, Bourlieu C, Maillard MB, Aubert-Frogerais L, Richoux R, Thierry A., J. Agric. Food Chem. 58(22), 2010
PMID: 20961108
Proteolysis, lipolysis, volatile compounds, texture, and flavor of Hispanico cheese made using frozen ewe milk curds pressed for different times.
Picon A, Gaya P, Fernandez-Garcia E, Rivas-Canedo A, Avila M, Nunez M., J. Dairy Sci. 93(7), 2010
PMID: 20630207
Influence of microfiltration and adjunct culture on quality of Domiati cheese.
Awad S, Ahmed N, El Soda M., J. Dairy Sci. 93(5), 2010
PMID: 20412894

AUTHOR UNKNOWN, 1985
Development of joint application strategies for two microbial gene finders.
McHardy AC, Goesmann A, Puhler A, Meyer F., Bioinformatics 20(10), 2004
PMID: 14988122
A probabilistic method for identifying start codons in bacterial genomes.
Suzek BE, Ermolaeva MD, Schreiber M, Salzberg SL., Bioinformatics 17(12), 2001
PMID: 11751220
REGANOR: a gene prediction server for prokaryotic genomes and a database of high quality gene predictions for prokaryotes.
Linke B, McHardy AC, Neuweger H, Krause L, Meyer F., Appl. Bioinformatics 5(3), 2006
PMID: 16922601
DNAPlotter: circular and linear interactive genome visualization.
Carver T, Thomson N, Bleasby A, Berriman M, Parkhill J., Bioinformatics 25(1), 2008
PMID: 18990721
CARMEN - Comparative Analysis and in silico Reconstruction of organism-specific MEtabolic Networks.
Schneider J, Vorholter FJ, Trost E, Blom J, Musa YR, Neuweger H, Niehaus K, Schatschneider S, Tauch A, Goesmann A., Genet. Mol. Res. 9(3), 2010
PMID: 20799163
Integration of CellDesigner and SABIO-RK.
Funahashi A, Jouraku A, Matsuoka Y, Kitano H., In Silico Biol. (Gedrukt) 7(2 Suppl), 2007
PMID: 17822394
Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®
Quellen

PMID: 22053731
PubMed | Europe PMC

Suchen in

Google Scholar