Circadian clock-regulated expression of an RNA-binding protein in Arabidopsis: characterisation of a minimal promoter element
Staiger D, Apel K (1999)
Molecular and General Genetics MGG 261(4-5): 811-819.
Zeitschriftenaufsatz
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Autor*in
Staiger, DorotheeUniBi;
Apel, Klaus
Abstract / Bemerkung
The Atgrp7 transcript encodes a clock-regulated, glycine-rich, RNA-binding protein in Arabidopsis thaliana and shows a circadian variation in steady-state abundance. Constitutive overexpression of its product, At GRP7, in transgenic Arabidopsis plants depresses the oscillations of the endogenous Atgrp7 transcript, indicating that both the transcript and the protein are part of a clock-regulated negative feedback circuit. Here we characterise the upstream region of the Atgrp7 gene in order to begin to dissect the molecular basis of this oscillating autoregulatory feedback loop. Fusion of a 1.5-kb promoter fragment to the β-glucuronidase ( gus ) reporter gene leads to circadian oscillations in the level of the gus transcript in transgenic Arabidopsis plants, with highest levels in the evening, indicating that transcription of the Atgrp7 gene is rhythmically activated by the endogenous circadian clock. A 265-bp fragment upstream of the transcription start site is necessary for high-amplitude Atgrp7 cycling. Within this region, a 56-bp clock-responsive element that confers a low-amplitude circadian oscillation (approximately threefold) with peak abundance in the early evening maps between positions â112 and â57. Another element necessary for augmenting the amplitude of the oscillation lies between â178 and â264. Genetic crosses between a line bearing a promoter- gus fusion and plants that overexpress At GRP7 show that the promoter by itself does not mediate the negative feedback of At GRP7 on the oscillations of its own transcript.
Stichworte
tRNA(Leu) gene;
clock response element;
protein;
glycine-rich RNA binding;
circadian rhythm;
Arabidopsis thaliana
Erscheinungsjahr
1999
Zeitschriftentitel
Molecular and General Genetics MGG
Band
261
Ausgabe
4-5
Seite(n)
811-819
ISSN
0026-8925
eISSN
1432-1874
Page URI
https://pub.uni-bielefeld.de/record/2439109
Zitieren
Staiger D, Apel K. Circadian clock-regulated expression of an RNA-binding protein in Arabidopsis: characterisation of a minimal promoter element. Molecular and General Genetics MGG. 1999;261(4-5):811-819.
Staiger, D., & Apel, K. (1999). Circadian clock-regulated expression of an RNA-binding protein in Arabidopsis: characterisation of a minimal promoter element. Molecular and General Genetics MGG, 261(4-5), 811-819. https://doi.org/10.1007/s004380050025
Staiger, Dorothee, and Apel, Klaus. 1999. “Circadian clock-regulated expression of an RNA-binding protein in Arabidopsis: characterisation of a minimal promoter element”. Molecular and General Genetics MGG 261 (4-5): 811-819.
Staiger, D., and Apel, K. (1999). Circadian clock-regulated expression of an RNA-binding protein in Arabidopsis: characterisation of a minimal promoter element. Molecular and General Genetics MGG 261, 811-819.
Staiger, D., & Apel, K., 1999. Circadian clock-regulated expression of an RNA-binding protein in Arabidopsis: characterisation of a minimal promoter element. Molecular and General Genetics MGG, 261(4-5), p 811-819.
D. Staiger and K. Apel, “Circadian clock-regulated expression of an RNA-binding protein in Arabidopsis: characterisation of a minimal promoter element”, Molecular and General Genetics MGG, vol. 261, 1999, pp. 811-819.
Staiger, D., Apel, K.: Circadian clock-regulated expression of an RNA-binding protein in Arabidopsis: characterisation of a minimal promoter element. Molecular and General Genetics MGG. 261, 811-819 (1999).
Staiger, Dorothee, and Apel, Klaus. “Circadian clock-regulated expression of an RNA-binding protein in Arabidopsis: characterisation of a minimal promoter element”. Molecular and General Genetics MGG 261.4-5 (1999): 811-819.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
UNIPROT
2 Einträge gefunden, die diesen Artikel zitieren
Glycine-rich RNA-binding protein 7 (UNIPROT: Q03250)
Organism: Arabidopsis thaliana
Download in FASTA format
Organism: Arabidopsis thaliana
Download in FASTA format
Glycine-rich RNA-binding protein 7 (UNIPROT: F4IHK9)
Organism: Arabidopsis thaliana
Download in FASTA format
Organism: Arabidopsis thaliana
Download in FASTA format
33 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
Computational exploration of cis-regulatory modules in rhythmic expression data using the "Exploration of Distinctive CREs and CRMs" (EDCC) and "CRM Network Generator" (CNG) programs.
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Adaptation of iCLIP to plants determines the binding landscape of the clock-regulated RNA-binding protein AtGRP7.
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Regulation of pri-miRNA processing by the hnRNP-like protein AtGRP7 in Arabidopsis.
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A circadian clock-regulated toggle switch explains AtGRP7 and AtGRP8 oscillations in Arabidopsis thaliana.
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Expression conservation within the circadian clock of a monocot: natural variation at barley Ppd-H1 affects circadian expression of flowering time genes, but not clock orthologs.
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An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana.
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Reciprocal regulation of glycine-rich RNA-binding proteins via an interlocked feedback loop coupling alternative splicing to nonsense-mediated decay in Arabidopsis.
Schöning JC, Streitner C, Meyer IM, Gao Y, Staiger D., Nucleic Acids Res 36(22), 2008
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Suzuki A, Knaff DB., Photosynth Res 83(2), 2005
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