A proteomic analysis of oligo(dT)-bound mRNP containing oxidative stress-induced Arabidopsis thaliana RNA-binding proteins ATGRP7 and ATGRP8

Schmidt F, Marnef A, Cheung M-K, Wilson I, Hancock J, Staiger D, Ladomery M (2010)
Molecular Biology Reports 37(2): 839-845.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
DOI
Autor*in
Schmidt, Fabian; Marnef, Aline; Cheung, Man-Kim; Wilson, Ian; Hancock, John; Staiger, DorotheeUniBi; Ladomery, Michael
Einrichtung
Centrum für Biotechnologie > Arbeitsgruppe D. Staiger
SFB 613 Physik von Einzelmolekülprozessen/mol.Erkennung in organ.Sys.
Fakultät für Biologie > RNA Biologie und Molekulare Physiologie
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Abstract / Bemerkung
Plants are highly adapted to respond to a range of environmental stresses commonly by altering their gene expression and metabolism as a result of cell signalling which may be mediated by reactive oxygen species. The glycine-rich RNA-binding proteins AT GRP7 and AT GRP8 were rapidly upregulated in response to peroxide-induced oxidative stress and were amongst the most abundant RNA binding proteins isolated by oligo(dT) chromatography. The oligo(dT)-bound mRNP complexes were analysed proteomically, and were seen to contain potential isoforms of the AT GRP proteins; other proteins that contain an RNA Recognition Motif (RRM); and chloroplast RNA binding proteins. These findings suggest that AT GRP proteins have an evolutionarily conserved function in the regulation of gene expression at the posttranscriptional level in response to environmental stress.
Erscheinungsjahr
2010
Zeitschriftentitel
Molecular Biology Reports
Band
37
Ausgabe
2
Seite(n)
839-845
ISSN
0301-4851
eISSN
1573-4978
Page URI
https://pub.uni-bielefeld.de/record/2438842

Zitieren

Schmidt F, Marnef A, Cheung M-K, et al. A proteomic analysis of oligo(dT)-bound mRNP containing oxidative stress-induced Arabidopsis thaliana RNA-binding proteins ATGRP7 and ATGRP8. Molecular Biology Reports. 2010;37(2):839-845.
Schmidt, F., Marnef, A., Cheung, M. - K., Wilson, I., Hancock, J., Staiger, D., & Ladomery, M. (2010). A proteomic analysis of oligo(dT)-bound mRNP containing oxidative stress-induced Arabidopsis thaliana RNA-binding proteins ATGRP7 and ATGRP8. Molecular Biology Reports, 37(2), 839-845. https://doi.org/10.1007/s11033-009-9636-x
Schmidt, Fabian, Marnef, Aline, Cheung, Man-Kim, Wilson, Ian, Hancock, John, Staiger, Dorothee, and Ladomery, Michael. 2010. “A proteomic analysis of oligo(dT)-bound mRNP containing oxidative stress-induced Arabidopsis thaliana RNA-binding proteins ATGRP7 and ATGRP8”. Molecular Biology Reports 37 (2): 839-845.
Schmidt, F., Marnef, A., Cheung, M. - K., Wilson, I., Hancock, J., Staiger, D., and Ladomery, M. (2010). A proteomic analysis of oligo(dT)-bound mRNP containing oxidative stress-induced Arabidopsis thaliana RNA-binding proteins ATGRP7 and ATGRP8. Molecular Biology Reports 37, 839-845.
Schmidt, F., et al., 2010. A proteomic analysis of oligo(dT)-bound mRNP containing oxidative stress-induced Arabidopsis thaliana RNA-binding proteins ATGRP7 and ATGRP8. Molecular Biology Reports, 37(2), p 839-845.
F. Schmidt, et al., “A proteomic analysis of oligo(dT)-bound mRNP containing oxidative stress-induced Arabidopsis thaliana RNA-binding proteins ATGRP7 and ATGRP8”, Molecular Biology Reports, vol. 37, 2010, pp. 839-845.
Schmidt, F., Marnef, A., Cheung, M.-K., Wilson, I., Hancock, J., Staiger, D., Ladomery, M.: A proteomic analysis of oligo(dT)-bound mRNP containing oxidative stress-induced Arabidopsis thaliana RNA-binding proteins ATGRP7 and ATGRP8. Molecular Biology Reports. 37, 839-845 (2010).
Schmidt, Fabian, Marnef, Aline, Cheung, Man-Kim, Wilson, Ian, Hancock, John, Staiger, Dorothee, and Ladomery, Michael. “A proteomic analysis of oligo(dT)-bound mRNP containing oxidative stress-induced Arabidopsis thaliana RNA-binding proteins ATGRP7 and ATGRP8”. Molecular Biology Reports 37.2 (2010): 839-845.

37 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Plant Glycine-Rich Proteins in Stress Response: An Emerging, Still Prospective Story.
Czolpinska M, Rurek M., Front Plant Sci 9(), 2018
PMID: 29568308
A Glycine-Rich RNA-Binding Protein, CsGR-RBP3, Is Involved in Defense Responses Against Cold Stress in Harvested Cucumber (Cucumis sativus L.) Fruit.
Wang B, Wang G, Shen F, Zhu S., Front Plant Sci 9(), 2018
PMID: 29740470
The Grape VlWRKY3 Gene Promotes Abiotic and Biotic Stress Tolerance in Transgenic Arabidopsis thaliana.
Guo R, Qiao H, Zhao J, Wang X, Tu M, Guo C, Wan R, Li Z, Wang X., Front Plant Sci 9(), 2018
PMID: 29922304
RNA-Binding Proteins Revisited - The Emerging Arabidopsis mRNA Interactome.
Köster T, Marondedze C, Meyer K, Staiger D., Trends Plant Sci 22(6), 2017
PMID: 28412036
Identifying the Genes Regulated by AtWRKY6 Using Comparative Transcript and Proteomic Analysis under Phosphorus Deficiency.
Li LQ, Huang LP, Pan G, Liu L, Wang XY, Lu LM., Int J Mol Sci 18(5), 2017
PMID: 28498313
ANGUSTIFOLIA, a Plant Homolog of CtBP/BARS Localizes to Stress Granules and Regulates Their Formation.
Bhasin H, Hülskamp M., Front Plant Sci 8(), 2017
PMID: 28659951
Genome-wide identification and phylogenetic analysis of plant RNA binding proteins comprising both RNA recognition motifs and contiguous glycine residues.
Lewinski M, Hallmann A, Staiger D., Mol Genet Genomics 291(2), 2016
PMID: 26589419
Arabidopsis CML38, a Calcium Sensor That Localizes to Ribonucleoprotein Complexes under Hypoxia Stress.
Lokdarshi A, Conner WC, McClintock C, Li T, Roberts DM., Plant Physiol 170(2), 2016
PMID: 26634999
Identification of potential cargo proteins of transportin protein AtTRN1 in Arabidopsis thaliana.
Yan B, Wang X, Wang Z, Chen N, Mu C, Mao K, Han L, Zhang W, Liu H., Plant Cell Rep 35(3), 2016
PMID: 26650834
UV crosslinked mRNA-binding proteins captured from leaf mesophyll protoplasts.
Zhang Z, Boonen K, Ferrari P, Schoofs L, Janssens E, van Noort V, Rolland F, Geuten K., Plant Methods 12(), 2016
PMID: 27822292
The evolutionarily conserved multifunctional glycine‐rich RNA‐binding proteins play key roles in development and stress adaptation
Ciuzan O, Hancock J, Pamfil D, Wilson I, Ladomery M., Physiol Plant 153(1), 2015
PMID: IND601259756
Pre-mRNA Splicing in Plants: In Vivo Functions of RNA-Binding Proteins Implicated in the Splicing Process.
Meyer K, Koester T, Staiger D., Biomolecules 5(3), 2015
PMID: 26213982
Salicylic acid-dependent and -independent impact of an RNA-binding protein on plant immunity.
Hackmann C, Korneli C, Kutyniok M, Köster T, Wiedenlübbert M, Müller C, Staiger D., Plant Cell Environ 37(3), 2014
PMID: 23961939
A glycine-rich RNA-binding protein affects gibberellin biosynthesis in Arabidopsis.
Löhr B, Streitner C, Steffen A, Lange T, Staiger D., Mol Biol Rep 41(1), 2014
PMID: 24281950
Circadian oscillation and development-dependent expression of glycine-rich RNA binding proteins in tomato fruits
Müller GL, Triassi A, Alvarez CE, Falcone Ferreyra ML, Andreo CS, Lara MV, Drincovich MF., Funct Plant Biol 41(4), 2014
PMID: IND500739485
Regulation of pri-miRNA processing by the hnRNP-like protein AtGRP7 in Arabidopsis.
Köster T, Meyer K, Weinholdt C, Smith LM, Lummer M, Speth C, Grosse I, Weigel D, Staiger D., Nucleic Acids Res 42(15), 2014
PMID: 25104024
Identification of a Coding Sequence and Structure Modeling of a Glycine-Rich RNA-Binding Protein (CmGRP1) from Chelidonium majus L.
Nawrot R, Tomaszewski L, Czerwoniec A, Goździcka-Józefiak A., Plant Mol Biol Report 31(), 2013
PMID: 24415842
Comparisons of protein profiles of beech bark disease resistant and susceptible American beech (Fagus grandifolia).
Mason ME, Koch JL, Krasowski M, Loo J., Proteome Sci 11(1), 2013
PMID: 23317283
Genomic era analyses of RNA secondary structure and RNA-binding proteins reveal their significance to post-transcriptional regulation in plants.
Silverman IM, Li F, Gregory BD., Plant Sci 205-206(), 2013
PMID: 23498863
A new set of reversibly photoswitchable fluorescent proteins for use in transgenic plants.
Lummer M, Humpert F, Wiedenlübbert M, Sauer M, Schüttpelz M, Staiger D., Mol Plant 6(5), 2013
PMID: 23434876
Protein disulfide isomerase 2 of Chlamydomonas reinhardtii is involved in circadian rhythm regulation.
Filonova A, Haemsch P, Gebauer C, Weisheit W, Wagner V., Mol Plant 6(5), 2013
PMID: 23475997
Post-transcriptional regulation of GORK channels by superoxide anion contributes to increases in outward-rectifying K⁺ currents.
Tran D, El-Maarouf-Bouteau H, Rossi M, Biligui B, Briand J, Kawano T, Mancuso S, Bouteau F., New Phytol 198(4), 2013
PMID: 23517047
A circadian clock-regulated toggle switch explains AtGRP7 and AtGRP8 oscillations in Arabidopsis thaliana.
Schmal C, Reimann P, Staiger D., PLoS Comput Biol 9(3), 2013
PMID: 23555221
Genomic era analyses of RNA secondary structure and RNA-binding proteins reveal their significance to post-transcriptional regulation in plants
Silverman IM, Brian D. Gregory, Fan Li., Plant Sci 205-(), 2013
PMID: IND500636344
Alternative splicing at the intersection of biological timing, development, and stress responses.
Staiger D, Brown JW., Plant Cell 25(10), 2013
PMID: 24179132
Using proteomic analysis to find the proteins involved in resistance against Sclerotinia sclerotiorum in adult Brassica napus
Wen L, Tan TL, Shu JB, Chen Y, Liu Y, Yang ZF, Zhang QP, Yin MZ, Tao J, Guan CY., Eur J Plant Pathol 137(3), 2013
PMID: IND500697521
Molecular characterization and expression analysis of a glycine-rich RNA-binding protein gene from Malus hupehensis Rehd.
Wang S, Wang R, Liang D, Ma F, Shu H., Mol Biol Rep 39(4), 2012
PMID: 21779801
New insights on proteomics of transgenic soybean seeds: evaluation of differential expressions of enzymes and proteins.
Barbosa HS, Arruda SC, Azevedo RA, Arruda MA., Anal Bioanal Chem 402(1), 2012
PMID: 21947011
Comparative proteomic analysis reveals the mechanisms governing cotton fiber differentiation and initiation.
Liu K, Han M, Zhang C, Yao L, Sun J, Zhang T., J Proteomics 75(3), 2012
PMID: 22015716
Ectopic expression of a grapevine transcription factor VvWRKY11 contributes to osmotic stress tolerance in Arabidopsis.
Liu H, Yang W, Liu D, Han Y, Zhang A, Li S., Mol Biol Rep 38(1), 2011
PMID: 20354906
Spotlight on post-transcriptional control in the circadian system.
Staiger D, Köster T., Cell Mol Life Sci 68(1), 2011
PMID: 20803230
Phylogenetic and expression analysis of RNA-binding proteins with triple RNA recognition motifs in plants.
Peal L, Jambunathan N, Mahalingam R., Mol Cells 31(1), 2011
PMID: 21120628
In-depth temporal transcriptome profiling reveals a crucial developmental switch with roles for RNA processing and organelle metabolism that are essential for germination in Arabidopsis.
Narsai R, Law SR, Carrie C, Xu L, Whelan J., Plant Physiol 157(3), 2011
PMID: 21908688
Structure function analysis of an ADP-ribosyltransferase type III effector and its RNA-binding target in plant immunity.
Jeong BR, Lin Y, Joe A, Guo M, Korneli C, Yang H, Wang P, Yu M, Cerny RL, Staiger D, Alfano JR, Xu Y., J Biol Chem 286(50), 2011
PMID: 22013065
Using high competent shoot apical meristems of cockscomb as explants for studying function of ASYMMETRIC LEAVES2-LIKE11 (ASL11) gene of Arabidopsis.
Sun SB, Meng LS, Sun XD, Feng ZH., Mol Biol Rep 37(8), 2010
PMID: 20306306
Global transcript profiling of transgenic plants constitutively overexpressing the RNA-binding protein AtGRP7.
Streitner C, Hennig L, Korneli C, Staiger D., BMC Plant Biol 10(), 2010
PMID: 20946635
Proteomic profiling of proteins associated with the rejuvenation of Sequoia sempervirens (D. Don) Endl.
Chang IF, Chen PJ, Shen CH, Hsieh TJ, Hsu YW, Huang BL, Kuo CI, Chen YT, Chu HA, Yeh KW, Huang LC., Proteome Sci 8(), 2010
PMID: 21143964

25 References

Daten bereitgestellt von Europe PubMed Central.

Regulation of the Arabidopsis transcriptome by oxidative stress.
Desikan R, A-H-Mackerness S, Hancock JT, Neill SJ., Plant Physiol. 127(1), 2001
PMID: 11553744

I, Plant Cell Env 31(), 2008

SJ, Curr Op Plant Biol 5(), 2002
Alternative splicing and proteome diversity in plants: the tip of the iceberg has just emerged.
Kazan K., Trends Plant Sci. 8(10), 2003
PMID: 14557042

Y, Curr Op Plant Biol 7(), 2004
The functions of microRNAs in plants.
Wang QL, Li ZH., Front. Biosci. 12(), 2007
PMID: 17485351

JS, Nucl Acids Res 35(), 2007
Glycine-rich RNA-binding protein 7 affects abiotic stress responses by regulating stomata opening and closing in Arabidopsis thaliana.
Kim JS, Jung HJ, Lee HJ, Kim KA, Goh CH, Woo Y, Oh SH, Han YS, Kang H., Plant J. 55(3), 2008
PMID: 18410480
A type III effector ADP-ribosylates RNA-binding proteins and quells plant immunity.
Fu ZQ, Guo M, Jeong BR, Tian F, Elthon TE, Cerny RL, Staiger D, Alfano JR., Nature 447(7142), 2007
PMID: 17450127
The small glycine-rich RNA binding protein AtGRP7 promotes floral transition in Arabidopsis thaliana.
Streitner C, Danisman S, Wehrle F, Schoning JC, Alfano JR, Staiger D., Plant J. 56(2), 2008
PMID: 18573194
Genes encoding glycine-rich Arabidopsis thaliana proteins with RNA-binding motifs are influenced by cold treatment and an endogenous circadian rhythm.
Carpenter CD, Kreps JA, Simon AE., Plant Physiol. 104(3), 1994
PMID: 7513083
AtGRP7 is involved in the regulation of abscisic acid and stress responses in Arabidopsis.
Cao S, Jiang L, Song S, Jing R, Xu G., Cell. Mol. Biol. Lett. 11(4), 2006
PMID: 17001447

R, Plant Physiol 117(), 1998

C, Proc Natl Acad Sci USA 94(), 1997
The circadian clock regulated RNA-binding protein AtGRP7 autoregulates its expression by influencing alternative splicing of its own pre-mRNA.
Staiger D, Zecca L, Wieczorek Kirk DA, Apel K, Eckstein L., Plant J. 33(2), 2003
PMID: 12535349
Auto-regulation of the circadian slave oscillator component AtGRP7 and regulation of its targets is impaired by a single RNA recognition motif point mutation.
Schoning JC, Streitner C, Page DR, Hennig S, Uchida K, Wolf E, Furuya M, Staiger D., Plant J. 52(6), 2007
PMID: 17924945
The splicing factor SRp20 modifies splicing of its own mRNA and ASF/SF2 antagonizes this regulation.
Jumaa H, Nielsen PJ., EMBO J. 16(16), 1997
PMID: 9305649
Multifunctional proteins suggest connections between transcriptional and post-transcriptional processes.
Ladomery M., Bioessays 19(10), 1997
PMID: 9363684
Arabidopsis transportin1 is the nuclear import receptor for the circadian clock-regulated RNA-binding protein AtGRP7.
Ziemienowicz A, Haasen D, Staiger D, Merkle T., Plant Mol. Biol. 53(1-2), 2003
PMID: 14756317

J, Proc Natl Acad Sci USA 102(), 2005
Presence of WT1, the Wilm's tumor suppressor gene product, in nuclear poly(A)(+) ribonucleoprotein.
Ladomery MR, Slight J, Mc Ghee S, Hastie ND., J. Biol. Chem. 274(51), 1999
PMID: 10593950
Cloning and characterization of human CIRP (cold-inducible RNA-binding protein) cDNA and chromosomal assignment of the gene.
Nishiyama H, Higashitsuji H, Yokoi H, Itoh K, Danno S, Matsuda T, Fujita J., Gene 204(1-2), 1997
PMID: 9434172
Proteomic identification of glyceraldehyde 3-phosphate dehydrogenase as an inhibitory target of hydrogen peroxide in Arabidopsis.
Hancock JT, Henson D, Nyirenda M, Desikan R, Harrison J, Lewis M, Hughes J, Neill SJ., Plant Physiol. Biochem. 43(9), 2005
PMID: 16289945
RBP45 and RBP47, two oligouridylate-specific hnRNP-like proteins interacting with poly(A)+ RNA in nuclei of plant cells.
Lorkovic ZJ, Wieczorek Kirk DA, Klahre U, Hemmings-Mieszczak M, Filipowicz W., RNA 6(11), 2000
PMID: 11105760
Translation regulatory factor RBM3 is a proto-oncogene that prevents mitotic catastrophe.
Sureban SM, Ramalingam S, Natarajan G, May R, Subramaniam D, Bishnupuri KS, Morrison AR, Dieckgraefe BK, Brackett DJ, Postier RG, Houchen CW, Anant S., Oncogene 27(33), 2008
PMID: 18427544
Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®
Quellen

PMID: 19672695
PubMed | Europe PMC

Suchen in

Google Scholar