RNA-based regulation in the plant circadian clock
Staiger D, Green R (2011)
Trends in Plant Science 16(10): 517-523.
Zeitschriftenaufsatz
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Autor*in
Staiger, DorotheeUniBi;
Green, Rachel
Einrichtung
Abstract / Bemerkung
The circadian clock is an endogenous, approximately 24-h timer that enables plants to anticipate daily changes in their environment and regulates a considerable fraction of the transcriptome. At the core of the circadian system is the oscillator, made up of interconnected feedback loops, involving transcriptional regulation of clock genes and post-translational modification of clock proteins. Recently, it has become clear that post-transcriptional events are also critical for shaping rhythmic mRNA and protein profiles. This review covers regulation at the RNA level of both the core clock and output genes in Arabidopsis (Arabidopsis thaliana), with comparisons with other model organisms. We discuss the role of splicing, mRNA decay and translational regulation as well as recent insights into rhythms of noncoding regulatory RNAs.
Erscheinungsjahr
2011
Zeitschriftentitel
Trends in Plant Science
Band
16
Ausgabe
10
Seite(n)
517-523
ISSN
1360-1385
Page URI
https://pub.uni-bielefeld.de/record/2438818
Zitieren
Staiger D, Green R. RNA-based regulation in the plant circadian clock. Trends in Plant Science. 2011;16(10):517-523.
Staiger, D., & Green, R. (2011). RNA-based regulation in the plant circadian clock. Trends in Plant Science, 16(10), 517-523. https://doi.org/10.1016/j.tplants.2011.06.002
Staiger, Dorothee, and Green, Rachel. 2011. “RNA-based regulation in the plant circadian clock”. Trends in Plant Science 16 (10): 517-523.
Staiger, D., and Green, R. (2011). RNA-based regulation in the plant circadian clock. Trends in Plant Science 16, 517-523.
Staiger, D., & Green, R., 2011. RNA-based regulation in the plant circadian clock. Trends in Plant Science, 16(10), p 517-523.
D. Staiger and R. Green, “RNA-based regulation in the plant circadian clock”, Trends in Plant Science, vol. 16, 2011, pp. 517-523.
Staiger, D., Green, R.: RNA-based regulation in the plant circadian clock. Trends in Plant Science. 16, 517-523 (2011).
Staiger, Dorothee, and Green, Rachel. “RNA-based regulation in the plant circadian clock”. Trends in Plant Science 16.10 (2011): 517-523.
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Daten bereitgestellt von European Bioinformatics Institute (EBI)
41 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
Subcellular Compartmentation of Alternatively Spliced Transcripts Defines SERINE/ARGININE-RICH PROTEIN30 Expression.
Hartmann L, Wießner T, Wachter A., Plant Physiol 176(4), 2018
PMID: 29496883
Hartmann L, Wießner T, Wachter A., Plant Physiol 176(4), 2018
PMID: 29496883
Beyond Transcription: Fine-Tuning of Circadian Timekeeping by Post-Transcriptional Regulation.
Mateos JL, de Leone MJ, Torchio J, Reichel M, Staiger D., Genes (Basel) 9(12), 2018
PMID: 30544736
Mateos JL, de Leone MJ, Torchio J, Reichel M, Staiger D., Genes (Basel) 9(12), 2018
PMID: 30544736
Light Regulation of Alternative Pre-mRNA Splicing in Plants.
Zhang H, Lin C, Gu L., Photochem Photobiol 93(1), 2017
PMID: 27925216
Zhang H, Lin C, Gu L., Photochem Photobiol 93(1), 2017
PMID: 27925216
AtHESPERIN: a novel regulator of circadian rhythms with poly(A)-degrading activity in plants.
Delis C, Krokida A, Tomatsidou A, Tsikou D, Beta RA, Tsioumpekou M, Moustaka J, Stravodimos G, Leonidas DD, Balatsos NA, Papadopoulou KK., RNA Biol 13(1), 2016
PMID: 26619288
Delis C, Krokida A, Tomatsidou A, Tsikou D, Beta RA, Tsioumpekou M, Moustaka J, Stravodimos G, Leonidas DD, Balatsos NA, Papadopoulou KK., RNA Biol 13(1), 2016
PMID: 26619288
Intron retention and rhythmic diel pattern regulation of carotenoid cleavage dioxygenase 2 during crocetin biosynthesis in saffron.
Ahrazem O, Rubio-Moraga A, Argandoña-Picazo J, Castillo R, Gómez-Gómez L., Plant Mol Biol 91(3), 2016
PMID: 27071403
Ahrazem O, Rubio-Moraga A, Argandoña-Picazo J, Castillo R, Gómez-Gómez L., Plant Mol Biol 91(3), 2016
PMID: 27071403
Ageing in relation to skeletal muscle dysfunction: redox homoeostasis to regulation of gene expression.
Goljanek-Whysall K, Iwanejko LA, Vasilaki A, Pekovic-Vaughan V, McDonagh B., Mamm Genome 27(7-8), 2016
PMID: 27215643
Goljanek-Whysall K, Iwanejko LA, Vasilaki A, Pekovic-Vaughan V, McDonagh B., Mamm Genome 27(7-8), 2016
PMID: 27215643
A Natural Light/Dark Cycle Regulation of Carbon-Nitrogen Metabolism and Gene Expression in Rice Shoots.
Li H, Liang Z, Ding G, Shi L, Xu F, Cai H., Front Plant Sci 7(), 2016
PMID: 27625675
Li H, Liang Z, Ding G, Shi L, Xu F, Cai H., Front Plant Sci 7(), 2016
PMID: 27625675
The Arabidopsis sickle Mutant Exhibits Altered Circadian Clock Responses to Cool Temperatures and Temperature-Dependent Alternative Splicing.
Marshall CM, Tartaglio V, Duarte M, Harmon FG., Plant Cell 28(10), 2016
PMID: 27624757
Marshall CM, Tartaglio V, Duarte M, Harmon FG., Plant Cell 28(10), 2016
PMID: 27624757
Alternative Splicing Substantially Diversifies the Transcriptome during Early Photomorphogenesis and Correlates with the Energy Availability in Arabidopsis.
Hartmann L, Drewe-Boß P, Wießner T, Wagner G, Geue S, Lee HC, Obermüller DM, Kahles A, Behr J, Sinz FH, Rätsch G, Wachter A., Plant Cell 28(11), 2016
PMID: 27803310
Hartmann L, Drewe-Boß P, Wießner T, Wagner G, Geue S, Lee HC, Obermüller DM, Kahles A, Behr J, Sinz FH, Rätsch G, Wachter A., Plant Cell 28(11), 2016
PMID: 27803310
The evolutionarily conserved multifunctional glycine‐rich RNA‐binding proteins play key roles in development and stress adaptation
Ciuzan O, Hancock J, Pamfil D, Wilson I, Ladomery M., Physiol Plant 153(1), 2015
PMID: IND601259756
Ciuzan O, Hancock J, Pamfil D, Wilson I, Ladomery M., Physiol Plant 153(1), 2015
PMID: IND601259756
The exosome controls alternative splicing by mediating the gene expression and assembly of the spliceosome complex.
Zhang L, Wan Y, Huang G, Wang D, Yu X, Huang G, Guo J., Sci Rep 5(), 2015
PMID: 26306464
Zhang L, Wan Y, Huang G, Wang D, Yu X, Huang G, Guo J., Sci Rep 5(), 2015
PMID: 26306464
The Circadian Clock Modulates Global Daily Cycles of mRNA Ribosome Loading.
Missra A, Ernest B, Lohoff T, Jia Q, Satterlee J, Ke K, von Arnim AG., Plant Cell 27(9), 2015
PMID: 26392078
Missra A, Ernest B, Lohoff T, Jia Q, Satterlee J, Ke K, von Arnim AG., Plant Cell 27(9), 2015
PMID: 26392078
Wheels within wheels: the plant circadian system.
Hsu PY, Harmer SL., Trends Plant Sci 19(4), 2014
PMID: 24373845
Hsu PY, Harmer SL., Trends Plant Sci 19(4), 2014
PMID: 24373845
Circadian oscillation and development-dependent expression of glycine-rich RNA binding proteins in tomato fruits
Müller GL, Triassi A, Alvarez CE, Falcone Ferreyra ML, Andreo CS, Lara MV, Drincovich MF., Funct Plant Biol 41(4), 2014
PMID: IND500739485
Müller GL, Triassi A, Alvarez CE, Falcone Ferreyra ML, Andreo CS, Lara MV, Drincovich MF., Funct Plant Biol 41(4), 2014
PMID: IND500739485
Multiple pathways regulate shoot branching.
Rameau C, Bertheloot J, Leduc N, Andrieu B, Foucher F, Sakr S., Front Plant Sci 5(), 2014
PMID: 25628627
Rameau C, Bertheloot J, Leduc N, Andrieu B, Foucher F, Sakr S., Front Plant Sci 5(), 2014
PMID: 25628627
Regulation of the circadian clock through pre-mRNA splicing in Arabidopsis.
Cui Z, Xu Q, Wang X., J Exp Bot 65(8), 2014
PMID: 24604736
Cui Z, Xu Q, Wang X., J Exp Bot 65(8), 2014
PMID: 24604736
Light Signaling in Bud Outgrowth and Branching in Plants.
Leduc N, Roman H, Barbier F, Péron T, Huché-Thélier L, Lothier J, Demotes-Mainard S, Sakr S., Plants (Basel) 3(2), 2014
PMID: 27135502
Leduc N, Roman H, Barbier F, Péron T, Huché-Thélier L, Lothier J, Demotes-Mainard S, Sakr S., Plants (Basel) 3(2), 2014
PMID: 27135502
Divergence of the expression and subcellular localization of CCR4-associated factor 1 (CAF1) deadenylase proteins in Oryza sativa.
Chou WL, Huang LF, Fang JC, Yeh CH, Hong CY, Wu SJ, Lu CA., Plant Mol Biol 85(4-5), 2014
PMID: 24805883
Chou WL, Huang LF, Fang JC, Yeh CH, Hong CY, Wu SJ, Lu CA., Plant Mol Biol 85(4-5), 2014
PMID: 24805883
De novo transcriptome assembly and comparative analysis of differentially expressed genes in Prunus dulcis Mill. in response to freezing stress.
Mousavi S, Alisoltani A, Shiran B, Fallahi H, Ebrahimie E, Imani A, Houshmand S., PLoS One 9(8), 2014
PMID: 25122458
Mousavi S, Alisoltani A, Shiran B, Fallahi H, Ebrahimie E, Imani A, Houshmand S., PLoS One 9(8), 2014
PMID: 25122458
Genomic analysis reveals novel connections between alternative splicing and circadian regulatory networks.
Perez-Santángelo S, Schlaen RG, Yanovsky MJ., Brief Funct Genomics 12(1), 2013
PMID: 23165351
Perez-Santángelo S, Schlaen RG, Yanovsky MJ., Brief Funct Genomics 12(1), 2013
PMID: 23165351
Reciprocal interaction of the circadian clock with the iron homeostasis network in Arabidopsis.
Hong S, Kim SA, Guerinot ML, McClung CR., Plant Physiol 161(2), 2013
PMID: 23250624
Hong S, Kim SA, Guerinot ML, McClung CR., Plant Physiol 161(2), 2013
PMID: 23250624
Genomic era analyses of RNA secondary structure and RNA-binding proteins reveal their significance to post-transcriptional regulation in plants.
Silverman IM, Li F, Gregory BD., Plant Sci 205-206(), 2013
PMID: 23498863
Silverman IM, Li F, Gregory BD., Plant Sci 205-206(), 2013
PMID: 23498863
Global approaches for telling time: omics and the Arabidopsis circadian clock.
Chow BY, Kay SA., Semin Cell Dev Biol 24(5), 2013
PMID: 23435351
Chow BY, Kay SA., Semin Cell Dev Biol 24(5), 2013
PMID: 23435351
Beyond Arabidopsis: the circadian clock in non-model plant species.
McClung CR., Semin Cell Dev Biol 24(5), 2013
PMID: 23466287
McClung CR., Semin Cell Dev Biol 24(5), 2013
PMID: 23466287
Ribonucleoprotein complexes that control circadian clocks.
Wang D, Liang X, Chen X, Guo J., Int J Mol Sci 14(5), 2013
PMID: 23698761
Wang D, Liang X, Chen X, Guo J., Int J Mol Sci 14(5), 2013
PMID: 23698761
ATAXIN-2 activates PERIOD translation to sustain circadian rhythms in Drosophila.
Lim C, Allada R., Science 340(6134), 2013
PMID: 23687047
Lim C, Allada R., Science 340(6134), 2013
PMID: 23687047
Genomic era analyses of RNA secondary structure and RNA-binding proteins reveal their significance to post-transcriptional regulation in plants
Silverman IM, Brian D. Gregory, Fan Li., Plant Sci 205-(), 2013
PMID: IND500636344
Silverman IM, Brian D. Gregory, Fan Li., Plant Sci 205-(), 2013
PMID: IND500636344
Adaptation of molecular circadian clockwork to environmental changes: a role for alternative splicing and miRNAs.
Bartok O, Kyriacou CP, Levine J, Sehgal A, Kadener S., Proc Biol Sci 280(1765), 2013
PMID: 23825200
Bartok O, Kyriacou CP, Levine J, Sehgal A, Kadener S., Proc Biol Sci 280(1765), 2013
PMID: 23825200
Circadian rhythms of sense and antisense transcription in sugarcane, a highly polyploid crop.
Hotta CT, Nishiyama MY, Souza GM., PLoS One 8(8), 2013
PMID: 23936527
Hotta CT, Nishiyama MY, Souza GM., PLoS One 8(8), 2013
PMID: 23936527
Emerging roles for post-transcriptional regulation in circadian clocks.
Lim C, Allada R., Nat Neurosci 16(11), 2013
PMID: 24165681
Lim C, Allada R., Nat Neurosci 16(11), 2013
PMID: 24165681
Newly described components and regulatory mechanisms of circadian clock function in Arabidopsis thaliana.
Troncoso-Ponce MA, Mas P., Mol Plant 5(3), 2012
PMID: 22230762
Troncoso-Ponce MA, Mas P., Mol Plant 5(3), 2012
PMID: 22230762
The regulation of plant growth by the circadian clock.
Farré EM., Plant Biol (Stuttg) 14(3), 2012
PMID: 22284304
Farré EM., Plant Biol (Stuttg) 14(3), 2012
PMID: 22284304
Deciphering the plant splicing code: experimental and computational approaches for predicting alternative splicing and splicing regulatory elements.
Reddy AS, Rogers MF, Richardson DN, Hamilton M, Ben-Hur A., Front Plant Sci 3(), 2012
PMID: 22645572
Reddy AS, Rogers MF, Richardson DN, Hamilton M, Ben-Hur A., Front Plant Sci 3(), 2012
PMID: 22645572
A self-regulatory circuit of CIRCADIAN CLOCK-ASSOCIATED1 underlies the circadian clock regulation of temperature responses in Arabidopsis.
Seo PJ, Park MJ, Lim MH, Kim SG, Lee M, Baldwin IT, Park CM., Plant Cell 24(6), 2012
PMID: 22715042
Seo PJ, Park MJ, Lim MH, Kim SG, Lee M, Baldwin IT, Park CM., Plant Cell 24(6), 2012
PMID: 22715042
Alternative splicing in plants--coming of age.
Syed NH, Kalyna M, Marquez Y, Barta A, Brown JW., Trends Plant Sci 17(10), 2012
PMID: 22743067
Syed NH, Kalyna M, Marquez Y, Barta A, Brown JW., Trends Plant Sci 17(10), 2012
PMID: 22743067
Effects of drought on gene expression in maize reproductive and leaf meristem tissue revealed by RNA-Seq.
Kakumanu A, Ambavaram MM, Klumas C, Krishnan A, Batlang U, Myers E, Grene R, Pereira A., Plant Physiol 160(2), 2012
PMID: 22837360
Kakumanu A, Ambavaram MM, Klumas C, Krishnan A, Batlang U, Myers E, Grene R, Pereira A., Plant Physiol 160(2), 2012
PMID: 22837360
An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana.
Streitner C, Köster T, Simpson CG, Shaw P, Danisman S, Brown JW, Staiger D., Nucleic Acids Res 40(22), 2012
PMID: 23042250
Streitner C, Köster T, Simpson CG, Shaw P, Danisman S, Brown JW, Staiger D., Nucleic Acids Res 40(22), 2012
PMID: 23042250
Novel interaction of two clock-relevant RNA-binding proteins C3 and XRN1 in Chlamydomonas reinhardtii.
Dathe H, Prager K, Mittag M., FEBS Lett 586(22), 2012
PMID: 23068615
Dathe H, Prager K, Mittag M., FEBS Lett 586(22), 2012
PMID: 23068615
Mutation of Arabidopsis spliceosomal timekeeper locus1 causes circadian clock defects.
Jones MA, Williams BA, McNicol J, Simpson CG, Brown JW, Harmer SL., Plant Cell 24(10), 2012
PMID: 23110899
Jones MA, Williams BA, McNicol J, Simpson CG, Brown JW, Harmer SL., Plant Cell 24(10), 2012
PMID: 23110899
Nascent-Seq reveals novel features of mouse circadian transcriptional regulation.
Menet JS, Rodriguez J, Abruzzi KC, Rosbash M., Elife 1(), 2012
PMID: 23150795
Menet JS, Rodriguez J, Abruzzi KC, Rosbash M., Elife 1(), 2012
PMID: 23150795
Polypyrimidine tract binding protein homologs from Arabidopsis are key regulators of alternative splicing with implications in fundamental developmental processes.
Rühl C, Stauffer E, Kahles A, Wagner G, Drechsel G, Rätsch G, Wachter A., Plant Cell 24(11), 2012
PMID: 23192226
Rühl C, Stauffer E, Kahles A, Wagner G, Drechsel G, Rätsch G, Wachter A., Plant Cell 24(11), 2012
PMID: 23192226
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