Microsatellite genotyping errors: detection approaches, common sources and consequences for paternal exclusion

Hoffman J, Amos W (2005)
Molecular Ecology 14(2): 599-612.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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DOI
Autor*in
Hoffman, JosephUniBi ; Amos, W.
Einrichtung
Fakultät für Biologie
Erscheinungsjahr
2005
Zeitschriftentitel
Molecular Ecology
Band
14
Ausgabe
2
Seite(n)
599-612
ISSN
0962-1083
Page URI
https://pub.uni-bielefeld.de/record/2399496

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Hoffman J, Amos W. Microsatellite genotyping errors: detection approaches, common sources and consequences for paternal exclusion. Molecular Ecology. 2005;14(2):599-612.
Hoffman, J., & Amos, W. (2005). Microsatellite genotyping errors: detection approaches, common sources and consequences for paternal exclusion. Molecular Ecology, 14(2), 599-612. https://doi.org/10.1111/j.1365-294x.2004.02419.x
Hoffman, Joseph, and Amos, W. 2005. “Microsatellite genotyping errors: detection approaches, common sources and consequences for paternal exclusion”. Molecular Ecology 14 (2): 599-612.
Hoffman, J., and Amos, W. (2005). Microsatellite genotyping errors: detection approaches, common sources and consequences for paternal exclusion. Molecular Ecology 14, 599-612.
Hoffman, J., & Amos, W., 2005. Microsatellite genotyping errors: detection approaches, common sources and consequences for paternal exclusion. Molecular Ecology, 14(2), p 599-612.
J. Hoffman and W. Amos, “Microsatellite genotyping errors: detection approaches, common sources and consequences for paternal exclusion”, Molecular Ecology, vol. 14, 2005, pp. 599-612.
Hoffman, J., Amos, W.: Microsatellite genotyping errors: detection approaches, common sources and consequences for paternal exclusion. Molecular Ecology. 14, 599-612 (2005).
Hoffman, Joseph, and Amos, W. “Microsatellite genotyping errors: detection approaches, common sources and consequences for paternal exclusion”. Molecular Ecology 14.2 (2005): 599-612.

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Serbezov D, Bernatchez L, Olsen EM, Vøllestad LA., J Evol Biol 23(8), 2010
PMID: 20524953
Genetic structure of the Black Bog Ant (Formica picea Nylander) in the United Kingdom
Rees SD, Orledge GM, Bruford MW, Bourke AFG., Conserv Genet 11(3), 2010
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Conservation genetics, foraging distance and nest density of the scarce Great Yellow Bumblebee (Bombus distinguendus).
Charman TG, Sears J, Green RE, Bourke AF., Mol Ecol 19(13), 2010
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Species delineation using Bayesian model-based assignment tests: a case study using Chinese toad-headed agamas (genus Phrynocephalus).
Noble DW, Qi Y, Fu J., BMC Evol Biol 10(), 2010
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Genetic estimates of immigration and emigration rates in relation to population density and forest patch area in Peromyscus leucopus
Anderson CS, Meikle DB., Conserv Genet 11(5), 2010
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Predominance of single paternity in the black spiny-tailed iguana: conservation genetic concerns for female-biased hunting
Faria CMA, Zarza E, Reynoso VH, Emerson BC., Conserv Genet 11(5), 2010
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Families in space: relatedness in the Barents Sea population of polar bears (Ursus maritimus).
Zeyl E, Aars J, Ehrich D, Wiig O., Mol Ecol 18(4), 2009
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Isolation by distance among California sea lion populations in Mexico: redefining management stocks.
González-Suárez M, Flatz R, Aurioles-Gamboa D, Hedrick PW, Gerber LR., Mol Ecol 18(6), 2009
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Microsatellite characterization and marker development from public EST and WGS databases in the reef-building coral Acropora millepora (Cnidaria, Anthozoa, Scleractinia).
Wang S, Zhang L, Matz M., J Hered 100(3), 2009
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Genotyping error detection in samples of unrelated individuals without replicate genotyping.
Liu N, Zhang D, Zhao H., Hum Hered 67(3), 2009
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Evolutionary potential of a large marine vertebrate: quantitative genetic parameters in a wild population.
Dibattista JD, Feldheim KA, Garant D, Gruber SH, Hendry AP., Evolution 63(4), 2009
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Significant deviations from Hardy-Weinberg equilibrium caused by low levels of microsatellite genotyping errors.
Morin PA, Leduc RG, Archer FI, Martien KK, Huebinger R, Bickham JW, Taylor BL., Mol Ecol Resour 9(2), 2009
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New polymorphic tetranucleotide microsatellites improve scoring accuracy in the bottlenose dolphin Tursiops aduncus.
Nater A, Kopps AM, Krützen M., Mol Ecol Resour 9(2), 2009
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Spatio-temporal genetic variation in sympatric and allopatric Mediterranean Cicada species (Hemiptera, Cicadidae)
SEABRA SOFIAG, QUARTAU JOSÉA, BRUFORD MICHAELW., Biol J Linn Soc Lond 96(2), 2009
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Efficient genotyping of Schistosoma mansoni miracidia following whole genome amplification.
Valentim CL, LoVerde PT, Anderson TJ, Criscione CD., Mol Biochem Parasitol 166(1), 2009
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A Cannabis sativa STR genotype database for Australian seizures: forensic applications and limitations.
Howard C, Gilmore S, Robertson J, Peakall R., J Forensic Sci 54(3), 2009
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Species identification and sibship assignment of sympatric larvae in the yucca moths Tegeticula synthetica and Tegeticula antithetica (Lepidoptera: Prodoxidae).
Drummond CS, Smith CI, Pellmyr O., Mol Ecol Resour 9(5), 2009
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Identifying the source of farmed escaped Atlantic salmon (Salmo salar): Bayesian clustering analysis increases accuracy of assignment
Glover KevinA, Skaala Øystein., Aquaculture 290(1-2), 2009
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Advancing ecological understandings through technological transformations in noninvasive genetics.
Beja-Pereira A, Oliveira R, Alves PC, Schwartz MK, Luikart G., Mol Ecol Resour 9(5), 2009
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Normalization and binning of historical and multi-source microsatellite data: overcoming the problems of allele size shift with allelogram.
Morin PA, Manaster C, Mesnick SL, Holland R., Mol Ecol Resour 9(6), 2009
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Highly polymorphic microsatellite loci for the Parsley frog (Pelodytes punctatus): characterization and testing for cross-species amplification
van de Vliet MS, Diekmann OE, Serrão ETA, Beja P., Conserv Genet 10(3), 2009
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The influence of evolutionary distance between cross-species microsatellites and primer base-pair composition on allelic dropout rates
Soulsbury CD, Iossa G, Edwards KJ., Conserv Genet 10(3), 2009
PMID: IND44203390
Contrasting patterns of genetic diversity at three different genetic markers in a marine mammal metapopulation.
Hoffman JI, Dasmahapatra KK, Amos W, Phillips CD, Gelatt TS, Bickham JW., Mol Ecol 18(14), 2009
PMID: 19500256
A panel of new microsatellite loci for genetic studies of antarctic fur seals and other otariids
Hoffman JI., Conserv Genet 10(4), 2009
PMID: IND44221864
A MOLECULAR EXAMINATION OF RELATEDNESS, MULTIPLE PATERNITY, AND COHABITATION OF THE SOUTHERN PLAINS WOODRAT (NEOTOMA MICROPUS).
Baxter BD, Mendez-Harclerode FM, Fulhorst CF, Bradley RD., J Mammal 90(4), 2009
PMID: 20011670
Comparison of contemporary mating patterns in continuous and fragmented Eucalyptus globulus native forests.
Mimura M, Barbour RC, Potts BM, Vaillancourt RE, Watanabe KN., Mol Ecol 18(20), 2009
PMID: 19769693
A consensus list of microsatellite markers for olive genotyping
Baldoni L, Cultrera NG, Mariotti R, Ricciolini C, Arcioni S, Vendramin GG, Buonamici A, Porceddu A, Sarri V, Ojeda MA, Trujillo I, Rallo L, Belaj A, Perri E, Salimonti A, Muzzalupo I, Casagrande A, Lain O, Messina R, Testolin R., Mol Breed 24(3), 2009
PMID: IND44262993
Software for quantifying and simulating microsatellite genotyping error.
Johnson PC, Haydon DT., Bioinform Biol Insights 1(), 2009
PMID: 20066126
Quantifying inbreeding in natural populations of hermaphroditic organisms.
Jarne P, David P., Heredity (Edinb) 100(4), 2008
PMID: 18301439
Cross-family amplification: microsatellites isolated from Macropodidae are polymorphic in Potoroidae
DONALDSON FR, VERCOE PE., Mol Ecol Notes 8(2), 2008
PMID: IND44012663
Ten novel polymorphic dinucleotide microsatellite loci cloned from the Antarctic fur seal Arctocephalus gazella
HOFFMAN JI, DASMAHAPATRA KK, NICHOLS HJ., Mol Ecol Notes 8(2), 2008
PMID: IND44012665
Genetic succession and spatial genetic structure in a natural old growth Cryptomeria japonica forest revealed by nuclear and chloroplast microsatellite markers
Takahashi Tomokazu, Tani Naoki, Niiyama Kaoru, Yoshida Shigejiro, Taira Hideaki, Tsumura Yoshihiko., For Ecol Manage 255(7), 2008
PMID: IND44047072
Heterozygosity and lungworm burden in harbour seals (Phoca vitulina).
Rijks JM, Hoffman JI, Kuiken T, Osterhaus AD, Amos W., Heredity (Edinb) 100(6), 2008
PMID: 18398424
Optimizing the use of shed feathers for genetic analysis.
Hogan FE, Cooke R, Burridge CP, Norman JA., Mol Ecol Resour 8(3), 2008
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Pyrosequencing as a method for SNP identification in the rhesus macaque (Macaca mulatta).
Satkoski JA, Malhi R, Kanthaswamy S, Tito R, Malladi V, Smith D., BMC Genomics 9(), 2008
PMID: 18510772
Significant genetic admixture after reintroduction of peregrine falcon (Falco peregrinus) in Southern Scandinavia
Jacobsen F, Nesje M, Bachmann L, Lifjeld JT., Conserv Genet 9(3), 2008
PMID: IND44049636
A genetic assessment of polyandry and breeding-site fidelity in lemon sharks.
DiBattista JD, Feldheim KA, Thibert-Plante X, Gruber SH, Hendry AP., Mol Ecol 17(14), 2008
PMID: 18564083
Paternity analysis of pollen-mediated gene flow for Fraxinus excelsior L. in a chronically fragmented landscape.
Bacles CF, Ennos RA., Heredity (Edinb) 101(4), 2008
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Contrasting genetic structuring between colonies of the World's smallest penguin, Eudyptula minor (Aves: Spheniscidae)
Overeem RL, Peucker (nee Mitchelson) AJ, Austin CM, Dann P, Burridge CP., Conserv Genet 9(4), 2008
PMID: IND44091349
Evaluation and selection of microsatellite markers for an identification and parentage test of Asian elephants (Elephas maximus)
Thitaram C, Thongtip N, Somgird C, Colenbrander B, van Boxtel DCJ, van Steenbeek F, Lenstra JA., Conserv Genet 9(4), 2008
PMID: IND44091352
A truer measure of the market: the molecular ecology of fisheries and wildlife trade.
Baker CS., Mol Ecol 17(18), 2008
PMID: 18643915
When dispersal fails: unexpected genetic separation in Gibraltar macaques (Macaca sylvanus).
Modolo L, Martin RD, van Schaik CP, van Noordwijk MA, Krũtzen M., Mol Ecol 17(18), 2008
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Morphological and genetic evidence for two evolutionarily significant units (ESUs) in the South American fur seal, Arctocephalus gazella
de Oliveira LR, Hoffman JI, Hingst-Zaher E, Majluf P, Muelbert MMC, Morgante JS, Amos W., Conserv Genet 9(6), 2008
PMID: IND44121787
Genetic characterisation of farmed rainbow trout in Norway: intra- and inter-strain variation reveals potential for identification of escapees.
Glover KA., BMC Genet 9(), 2008
PMID: 19087266
Cryptic speciation in a benthic isopod from Patagonian and Falkland Island waters and the impact of glaciations on its population structure.
Leese F, Kop A, Wägele JW, Held C., Front Zool 5(), 2008
PMID: 19099566
The effects of SNP genotyping errors on the power of the Cochran-Armitage linear trend test for case/control association studies.
Ahn K, Haynes C, Kim W, Fleur RS, Gordon D, Finch SJ., Ann Hum Genet 71(pt 2), 2007
PMID: 17096677
A cautionary tale: Lack of consistency in allele sizes between two laboratories for a published multilocus microsatellite typing system.
Pasqualotto AC, Denning DW, Anderson MJ., J Clin Microbiol 45(2), 2007
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Maximum-likelihood estimation of allelic dropout and false allele error rates from microsatellite genotypes in the absence of reference data.
Johnson PC, Haydon DT., Genetics 175(2), 2007
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Automated binning of microsatellite alleles: problems and solutions
AMOS W, HOFFMAN JI, FRODSHAM A, ZHANG L, BEST S, HILL AVS., Mol Ecol Notes 7(1), 2007
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Ten novel dinucleotide microsatellite loci cloned from the Galápagos sea lion (Zalophus californianus wollebaeki) are polymorphic in other pinniped species
HOFFMAN JI, STEINFARTZ S, WOLF JBW., Mol Ecol Notes 7(1), 2007
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Parentage allocation in a complex situation: A large commercial Atlantic cod (Gadus morhua) mass spawning tank
Herlin M, Taggart JB, McAndrew BJ, Penman DJ., Aquaculture 272(1), 2007
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Female fur seals show active choice for males that are heterozygous and unrelated.
Hoffman JI, Forcada J, Trathan PN, Amos W., Nature 445(7130), 2007
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Empirical evaluation of selective DNA pooling to map QTL in dairy cattle using a half-sib design by comparison to individual genotyping and interval mapping.
Mariasegaram M, Robinson NA, Goddard ME., Genet Sel Evol 39(3), 2007
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A test of the efficacy of whole-genome amplification on DNA obtained from low-yield samples
GUNN MR, HARTNUP K, BOUTIN S, SLATE J, COLTMAN DW., Mol Ecol Notes 7(3), 2007
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Reliable selfing rate estimates from imperfect population genetic data.
David P, Pujol B, Viard F, Castella V, Goudet J., Mol Ecol 16(12), 2007
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Allelic dropout from a high-quality DNA source
Soulsbury CD, Iossa G, Edwards KJ, Baker PJ, Harris S., Conserv Genet 8(3), 2007
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Genetic reconstruction of the population dynamics of a carnivorous marsupial (Antechinus flavipes) in response to floods.
Lada H, Mac Nally R, Taylor AC., Mol Ecol 16(14), 2007
PMID: 17614908
Large-scale zygosity testing using single nucleotide polymorphisms.
Hannelius U, Gherman L, Mäkelä VV, Lindstedt A, Zucchelli M, Lagerberg C, Tybring G, Kere J, Lindgren CM., Twin Res Hum Genet 10(4), 2007
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Microsatellite markers in an invasive strain of Asparagopsis taxiformis (Bonnemaisoniales, Rhodophyta): insights in ploidy level and sexual reproduction.
Andreakis N, Kooistra WH, Procaccini G., Gene 406(1-2), 2007
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DEco-TILLING: an inexpensive method for single nucleotide polymorphism discovery that reduces ascertainment bias
GARVIN MR, GHARRETT AJ., Mol Ecol Notes 7(5), 2007
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Patterns of male reproductive success in a highly promiscuous whale species: the endangered North Atlantic right whale.
Frasier TR, Hamilton PK, Brown MW, Conger LA, Knowlton AR, Marx MK, Slay CK, Kraus SD, White BN., Mol Ecol 16(24), 2007
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Trend-TDT - a transmission/disequilibrium based association test on functional mini/microsatellites.
Feng BJ, Goldgar DE, Corbex M., BMC Genet 8(), 2007
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The frequency and fitness consequences of communal breeding in a natural population of burying beetles: a test of reproductive skew
SCOTT MP, LEE WJ, van der REIJDEN ED., Ecol Entomol 32(6), 2007
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Maternal typing and test sufficiency in parentage analyses.
Wenk RE, Houtz T, Chiafari FA., Transfusion 46(2), 2006
PMID: 16441595
An evaluation of allowing for mismatches as a way to manage genotyping errors in parentage assignment by exclusion
Vandeputte M, Mauger S, Dupont-Nivet M., Mol Ecol Notes 6(1), 2006
PMID: IND43783970
Application of DNA parentage analyses for determining relative growth rates of Penaeus japonicus families reared in commercial ponds
Jerry DR, Preston NP, Crocos PJ, Keys S, Meadows JRS, Li Y., Aquaculture 254(1-4), 2006
PMID: IND43811791
Microsatellites for ecologists: a practical guide to using and evaluating microsatellite markers.
Selkoe KA, Toonen RJ., Ecol Lett 9(5), 2006
PMID: 16643306
Development of a microsatellite DNA parentage marker suite for black tiger shrimp Penaeus monodon
Jerry DR, Evans BS, Kenway M, Wilson K., Aquaculture 255(1-4), 2006
PMID: IND43811147
No relationship between microsatellite variation and neonatal fitness in Antarctic fur seals, Arctocephalus gazella.
Hoffman JI, Forcada J, Amos W., Mol Ecol 15(7), 2006
PMID: 16689914
DNA typing and genetic relations among European hazelnut (Corylus avellana L.) cultivars using microsatellite markers.
Boccacci P, Akkak A, Botta R., Genome 49(6), 2006
PMID: 16936839
Estimates of relatedness in groups of humpback whales (Megaptera novaeangliae) on two wintering grounds of the Southern Hemisphere.
Pomilla C, Rosenbaum HC., Mol Ecol 15(9), 2006
PMID: 16842425
Deep genetic subdivision within a continuously distributed and highly vagile marine mammal, the Steller's sea lion (Eumetopias jubatus).
Hoffman JI, Matson CW, Amos W, Loughlin TR, Bickham JW., Mol Ecol 15(10), 2006
PMID: 16911203
Mating system and reproductive success in eastern Pacific harbour seals.
Hayes SA, Pearse DE, Costa DP, Costa DP, Harvey JT, Le Boeuf BJ, Garza JC., Mol Ecol 15(10), 2006
PMID: 16911218
Genotyping of simple sequence repeats--factors implicated in shadow band generation revisited.
Olejniczak M, Krzyzosiak WJ., Electrophoresis 27(19), 2006
PMID: 16960838
Genetic structure and assignment tests demonstrate illegal translocation of red deer (Cervus elaphus) into a continuous population.
Frantz AC, Pourtois JT, Heuertz M, Schley L, Flamand MC, Krier A, Bertouille S, Chaumont F, Burke T., Mol Ecol 15(11), 2006
PMID: 16968264
Towards unbiased parentage assignment: combining genetic, behavioural and spatial data in a Bayesian framework.
Hadfield JD, Richardson DS, Burke T., Mol Ecol 15(12), 2006
PMID: 17032269
Genetic tagging reveals extreme site fidelity in territorial male Antarctic fur seals Arctocephalus gazella.
Hoffman JI, Trathan PN, Amos W., Mol Ecol 15(12), 2006
PMID: 17032279
Significant patterns of population genetic structure and limited gene flow in a threatened macropodid marsupial despite continuous habitat in southeast Queensland, Australia
Hazlitt SL, Goldizen AW, Eldridge MDB., Conserv Genet 7(5), 2006
PMID: IND604394541
Good genes sexual selection in nature.
Byers JA, Waits L., Proc Natl Acad Sci U S A 103(44), 2006
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Mitigating scoring errors in microsatellite data from wild populations
DEWOODY JENNIFER, NASON JOHND, HIPKINS VALERIED., Mol Ecol Notes 6(4), 2006
PMID: IND43854680
Sexual selection for male dominance reduces opportunities for female mate choice in the European bitterling (Rhodeus sericeus).
Reichard M, Bryja J, Ondracková M, Dávidová M, Kaniewska P, Smith C., Mol Ecol 14(5), 2005
PMID: 15813791
Does kin selection influence fostering behaviour in Antarctic fur seals (Arctocephalus gazella)?
Hoffman JI, Amos W., Proc Biol Sci 272(1576), 2005
PMID: 16191611
Unbiased estimation of relative reproductive success of different groups: evaluation and correction of bias caused by parentage assignment errors.
Araki H, Blouin MS., Mol Ecol 14(13), 2005
PMID: 16262861
The potential costs of accounting for genotypic errors in molecular parentage analyses.
Morrissey MB, Wilson AJ., Mol Ecol 14(13), 2005
PMID: 16262862
Genotyping errors: causes, consequences and solutions.
Pompanon F, Bonin A, Bellemain E, Taberlet P., Nat Rev Genet 6(11), 2005
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