Pinniped phylogenetic relationships inferred using AFLP markers

Dasmahapatra, K. K.; Hoffman, Joseph; Amos, W.

Pinniped phylogenetic relationships inferred using AFLP markers

Dasmahapatra KK, Hoffman J, Amos W (2009)
Heredity 103(2): 168-177.

Zeitschriftenaufsatz | Veröffentlicht | Englisch

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DOI

https://doi.org/10.1038/hdy.2009.25

Autor*in

Dasmahapatra, K. K.; Hoffman, Joseph^UniBi ; Amos, W.

Einrichtung

Fakultät für Biologie

Erscheinungsjahr

2009

Zeitschriftentitel

Heredity

Band

103

Ausgabe

2

Seite(n)

168-177

ISSN

0018-067X

eISSN

1365-2540

Page URI

https://pub.uni-bielefeld.de/record/2399214

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Dasmahapatra KK, Hoffman J, Amos W. Pinniped phylogenetic relationships inferred using AFLP markers. Heredity. 2009;103(2):168-177.

Dasmahapatra, K. K., Hoffman, J., & Amos, W. (2009). Pinniped phylogenetic relationships inferred using AFLP markers. Heredity, 103(2), 168-177. https://doi.org/10.1038/hdy.2009.25

Dasmahapatra, K. K., Hoffman, Joseph, and Amos, W. 2009. “Pinniped phylogenetic relationships inferred using AFLP markers”. Heredity 103 (2): 168-177.

Dasmahapatra, K. K., Hoffman, J., and Amos, W. (2009). Pinniped phylogenetic relationships inferred using AFLP markers. Heredity 103, 168-177.

Dasmahapatra, K.K., Hoffman, J., & Amos, W., 2009. Pinniped phylogenetic relationships inferred using AFLP markers. Heredity, 103(2), p 168-177.

K.K. Dasmahapatra, J. Hoffman, and W. Amos, “Pinniped phylogenetic relationships inferred using AFLP markers”, Heredity, vol. 103, 2009, pp. 168-177.

Dasmahapatra, K.K., Hoffman, J., Amos, W.: Pinniped phylogenetic relationships inferred using AFLP markers. Heredity. 103, 168-177 (2009).

Dasmahapatra, K. K., Hoffman, Joseph, and Amos, W. “Pinniped phylogenetic relationships inferred using AFLP markers”. Heredity 103.2 (2009): 168-177.

Daten bereitgestellt von European Bioinformatics Institute (EBI)

18 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Snails in the desert: Species diversification of Theba (Gastropoda: Helicidae) along the Atlantic coast of NW Africa.
Greve C, Haase M, Hutterer R, Rödder D, Ihlow F, Misof B., Ecol Evol 7(14), 2017
PMID: 28770088

Taxonomist's Nightmare … Evolutionist's Delight : An Integrative Approach Resolves Species Limits in Jumping Bristletails Despite Widespread Hybridization and Parthenogenesis.
Dejaco T, Gassner M, Arthofer W, Schlick-Steiner BC, Steiner FM., Syst Biol 65(6), 2016
PMID: 26869489

Fine-scale matrilineal population structure in the Galapagos fur seal and its implications for conservation management
Lopes F, Hoffman JI, Valiati VH, Bonatto SL, Wolf JBW, Trillmich F, Oliveira LR., Conserv Genet 16(5), 2015
PMID: IND604394511

Impact of deep coalescence and recombination on the estimation of phylogenetic relationships among species using AFLP markers.
García-Pereira MJ, Carvajal-Rodríguez A, Whelan S, Caballero A, Quesada H., Mol Phylogenet Evol 76(), 2014
PMID: 24631855

Niche divergence promotes rapid diversification of East African sky island white-eyes (Aves: Zosteropidae).
Cox SC, Prys-Jones RP, Habel JC, Amakobe BA, Day JJ., Mol Ecol 23(16), 2014
PMID: 24954273

Hierarchical population genetic structure in a direct developing antarctic marine invertebrate.
Hoffman JI, Clarke A, Clark MS, Peck LS., PLoS One 8(5), 2013
PMID: 23691125

Unexpected fine-scale population structure in a broadcast-spawning Antarctic marine mollusc.
Hoffman JI, Clarke A, Clark MS, Fretwell P, Peck LS., PLoS One 7(3), 2012
PMID: 22403655

AFLP markers resolve intra-specific relationships and infer genetic structure among lineages of the canyon treefrog, Hyla arenicolor.
Klymus KE, Carl Gerhardt H., Mol Phylogenet Evol 65(2), 2012
PMID: 22898531

Automated masking of AFLP markers improves reliability of phylogenetic analyses.
Kück P, Greve C, Misof B, Gimnich F., PLoS One 7(11), 2012
PMID: 23152859

Strong population genetic structure in a broadcast-spawning Antarctic marine invertebrate.
Hoffman JI, Peck LS, Linse K, Clarke A., J Hered 102(1), 2011
PMID: 20720149

AFLPs support deep relationships among darters (Percidae: Etheostomatinae) consistent with morphological hypotheses.
Smith TA, Mendelson TC, Page LM., Heredity (Edinb) 107(6), 2011
PMID: 21712845

Mating and Parental Care in Lake Tanganyika's Cichlids.
Sefc KM., Int J Evol Biol 2011(), 2011
PMID: 21822482

The relative contribution of band number to phylogenetic accuracy in AFLP data sets.
García-Pereira MJ, Caballero A, Quesada H., J Evol Biol 24(11), 2011
PMID: 21848979

Resolution of the Acanthopagrus black seabream complex based on mitochondrial and amplified fragment-length polymorphism analyses.
Hsu TH, Guillén Madrid AG, Burridge CP, Cheng HY, Gwo JC., J Fish Biol 79(5), 2011
PMID: 22026601

Multiple markers and multiple individuals refine true seal phylogeny and bring molecules and morphology back in line.
Fulton TL, Strobeck C., Proc Biol Sci 277(1684), 2010
PMID: 19939841

Evaluating the relationship between evolutionary divergence and phylogenetic accuracy in AFLP data sets.
García-Pereira MJ, Caballero A, Quesada H., Mol Biol Evol 27(5), 2010
PMID: 20026482

Multiple fossil calibrations, nuclear loci and mitochondrial genomes provide new insight into biogeography and divergence timing for true seals (Phocidae, Pinnipedia)
Fulton TL, Strobeck C., J Biogeogr 37(5), 2010
PMID: IND44358483

Are mimics monophyletic? The necessity of phylogenetic hypothesis tests in character evolution.
Oliver JC, Prudic KL., BMC Evol Biol 10(), 2010
PMID: 20682073

62 References

Daten bereitgestellt von Europe PubMed Central.

AFLP markers for DNA fingerprinting in cattle.
Ajmone-Marsan P, Valentini A, Cassandro M, Vecchiotti-Antaldi G, Bertoni G, Kuiper M., Anim. Genet. 28(6), 1997
PMID: 9589583

Phylogeny, evolutionary history, and biogeography of Oriental-Australian rear-fanged water snakes (Colubroidea: Homalopsidae) inferred from mitochondrial and nuclear DNA sequences.
Alfaro ME, Karns DR, Voris HK, Brock CD, Stuart BL., Mol. Phylogenet. Evol. 46(2), 2007
PMID: 18182308

The utility of amplified fragment length polymorphisms in phylogenetics: a comparison of homology within and between genomes.
Althoff DM, Gitzendanner MA, Segraves KA., Syst. Biol. 56(3), 2007
PMID: 17562471

Arens, Mol Ecol 7(), 1998

A molecular view of pinniped relationships with particular emphasis on the true seals.
Arnason U, Bodin K, Gullberg A, Ledje C, Mouchaty S., J. Mol. Evol. 40(1), 1995
PMID: 7714914

Pinniped phylogeny and a new hypothesis for their origin and dispersal.
Arnason U, Gullberg A, Janke A, Kullberg M, Lehman N, Petrov EA, Vainola R., Mol. Phylogenet. Evol. 41(2), 2006
PMID: 16815048

The incomplete natural history of mitochondria.
Ballard JW, Whitlock MC., Mol. Ecol. 13(4), 2004
PMID: 15012752

Sympatric speciation in Nicaraguan crater lake cichlid fish.
Barluenga M, Stolting KN, Salzburger W, Muschick M, Meyer A., Nature 439(7077), 2006
PMID: 16467837

Beltrán, Biol J Linn Soc 92(), 2007

Ten years of AFLP in ecology and evolution: why so few animals?
Bensch S, Akesson M., Mol. Ecol. 14(10), 2005
PMID: 16101761

Bininda-Emonds, Bohne Zoologische Monographien 41(), 1996

How to track and assess genotyping errors in population genetics studies.
Bonin A, Bellemain E, Bronken Eidesen P, Pompanon F, Brochmann C, Taberlet P., Mol. Ecol. 13(11), 2004
PMID: 15487987

Bonnet, J Stat Softw 7(), 2002

Brunner, System Biodivers 1(), 2003

Phylogeny of bovine species based on AFLP fingerprinting.
Buntjer JB, Otsen M, Nijman IJ, Kuiper MT, Lenstra JA., Heredity (Edinb) 88(1), 2002
PMID: 11813106

Bussell, Perspect Plant Ecol Evol Syst 7(), 2005

Leaky prezygotic isolation and porous genomes: rapid introgression of maternally inherited DNA.
Chan KM, Levin SA., Evolution 59(4), 2005
PMID: 15926684

Estimating levels of inbreeding using AFLP markers.
Dasmahapatra KK, Lacy RC, Amos W., Heredity (Edinb) 100(3), 2007
PMID: 17987055

Taxonomy: DNA barcodes: recent successes and future prospects.
Dasmahapatra KK, Mallet J., Heredity (Edinb) 97(4), 2006
PMID: 16788705

Felsenstein, Cladistics 5(), 1989

AUTHOR UNKNOWN, 0

DNA primers for amplification of mitochondrial cytochrome c oxidase subunit I from diverse metazoan invertebrates.
Folmer O, Black M, Hoeh W, Lutz R, Vrijenhoek R., Mol. Marine Biol. Biotechnol. 3(5), 1994
PMID: 7881515

Molecular phylogeny of the Arctoidea (Carnivora): effect of missing data on supertree and supermatrix analyses of multiple gene data sets.
Fulton TL, Strobeck C., Mol. Phylogenet. Evol. 41(1), 2006
PMID: 16814570

Fyler, J Biogeogr 32(), 2005

Greenwood, Anim Behav 28(), 1980

Biological identifications through DNA barcodes.
Hebert PD, Cywinska A, Ball SL, deWaard JR., Proc. Biol. Sci. 270(1512), 2003
PMID: 12614582

A coalescent estimator of the population recombination rate.
Hey J, Wakeley J., Genetics 145(3), 1997
PMID: 9055092

Phylogeny and divergence of the pinnipeds (Carnivora: Mammalia) assessed using a multigene dataset.
Higdon JW, Bininda-Emonds OR, Beck RM, Ferguson SH., BMC Evol. Biol. 7(), 2007
PMID: 17996107

MRBAYES: Bayesian inference of phylogenetic trees.
Huelsenbeck JP, Ronquist F., Bioinformatics 17(8), 2001
PMID: 11524383

Phylogeny of Australasian agamid lizards based on nuclear and mitochondrial genes: implications for morphological evolution and biogeography
HUGALL AF, FOSTER R, HUTCHINSON M, LEE MSY., Biol. J. Linn. Soc. Lond. 93(2), 2008
PMID: IND43999332

Problems with mitochondrial DNA as a marker in population, phylogeographic and phylogenetic studies: the effects of inherited symbionts.
Hurst GD, Jiggins FM., Proc. Biol. Sci. 272(1572), 2005
PMID: 16048766

Jaccard, Bulletin del la Société Vaudoise des Sciences Naturelles 37(), 1901

Reproducibility of RAPD, AFLP and SSR markers in plants by a network of European laboratories.
Jones CJ, Edwards KJ, Castaglione S, Winfield MO, Sala F, Wiel Cvande, Bredemeijer G, Vosman B, Matthes M, Daly S., Mol. Breed. 3(5), 1997
PMID: IND21234393

Phylogenetic signal in AFLP data sets.
Koopman WJ., Syst. Biol. 54(2), 2005
PMID: 16012092

AFLP markers as a tool to reconstruct complex relationships: A case study in Rosa (Rosaceae).
Koopman WJM, Wissemann V, De Cock K, Van Huylenbroeck J, De Riek J, Sabatino GJH, Visser D, Vosman B, Ritz CM, Maes B, Werlemark G, Nybom H, Debener T, Linde M, Smulders MJM., Am. J. Bot. 95(3), 2008
PMID: IND44022634

Lancaster, Mol Ecol 15(), 2007

Le, Syst Zool 23(), 1974

Mitonuclear discordance is caused by rampant mitochondrial introgression in Neodiprion (Hymenoptera: Diprionidae) sawflies.
Linnen CR, Farrell BD., Evolution 61(6), 2007
PMID: 17542850

Luo, Stat Appl Genet Mol Biol 6(), 2007

Madden, Anim Behav 68(), 2004

Molecular systematics of the butterfly genus Ithomia (Lepidoptera: Ithomiinae): a composite phylogenetic hypothesis based on seven genes.
Mallarino R, Bermingham E, Willmott KR, Whinnett A, Jiggins CD., Mol. Phylogenet. Evol. 34(3), 2004
PMID: 15683934

AFLPs resolve cytonuclear discordance and increase resolution among barcheek darters (Percidae: Etheostoma: Catonotus).
Mendelson TC, Simons JN., Mol. Phylogenet. Evol. 41(2), 2006
PMID: 16782357

AFLP genotyping and fingerprinting.
Mueller UG, Wolfenbarger LL., Trends Ecol. Evol. (Amst.) 14(10), 1999
PMID: 10481200

Phylogeny, historical biogeography, and taxonomic ranking of Parnassiinae (Lepidoptera, Papilionidae) based on morphology and seven genes.
Nazari V, Zakharov EV, Sperling FA., Mol. Phylogenet. Evol. 42(1), 2006
PMID: 16919972

Mathematical model for studying genetic variation in terms of restriction endonucleases.
Nei M, Li WH., Proc. Natl. Acad. Sci. U.S.A. 76(10), 1979
PMID: 291943

Nies, Mamm Biol 70(), 2005

The phylogeny of yuccas.
Pellmyr O, Segraves KA, Althoff DM, Balcazar-Lara M, Leebens-Mack J., Mol. Phylogenet. Evol. 43(2), 2006
PMID: 17289405

AUTHOR UNKNOWN, 0

Mitochondrial markers in the ant Leptothorax rugatulus reveal the population genetic consequences of female philopatry at different hierarchical levels.
Ruppell O, Stratz M, Baier B, Heinze J., Mol. Ecol. 12(3), 2003
PMID: 12675834

AUTHOR UNKNOWN, 0

Evidence from nuclear DNA sequences sheds light on the phylogenetic relationships of Pinnipedia: single origin with affinity to Musteloidea.
Sato JJ, Wolsan M, Suzuki H, Hosoda T, Yamaguchi Y, Hiyama K, Kobayashi M, Minami S., Zool. Sci. 23(2), 2006
PMID: 16603806

AUTHOR UNKNOWN, 0

Utility and evolution of cytochrome b in insects.
Simmons RB, Weller SJ., Mol. Phylogenet. Evol. 20(2), 2001
PMID: 11476629

Sivertson, K Norske Vidensk Selsk Forh 26(), 1953

Phylogeny and divergence-date estimates of rapid radiations in muroid rodents based on multiple nuclear genes.
Steppan S, Adkins R, Anderson J., Syst. Biol. 53(4), 2004
PMID: 15371245

Stoeckle, Sci Am 10(), 2008

AFLP: a new technique for DNA fingerprinting.
Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M., Nucleic Acids Res. 23(21), 1995
PMID: 7501463

Chelex 100 as a medium for simple extraction of DNA for PCR-based typing from forensic material.
Walsh PS, Metzger DA, Higuchi R., BioTechniques 10(4), 1991
PMID: 1867860

Galapagos and Californian sea lions are separate species: Genetic analysis of the genus Zalophus and its implications for conservation management.
Wolf JB, Tautz D, Trillmich F., Front. Zool. 4(), 2007
PMID: 17868473

Phylogenetic relationships within the eared seals (Otariidae: Carnivora): implications for the historical biogeography of the family.
Wynen LP, Goldsworthy SD, Insley SJ, Adams M, Bickham JW, Francis J, Gallo JP, Hoelzel AR, Majluf P, White RW, Slade R., Mol. Phylogenet. Evol. 21(2), 2001
PMID: 11697921

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