Contrasting patterns of genetic diversity at three different genetic markers in a marine mammal metapopulation

Hoffman J, Dasmahapatra KK, Amos W, Phillips CD, Gelatt TS, Bickham JW (2009)
Molecular Ecology 18(14): 2961-2978.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Hoffman, JosephUniBi ; Dasmahapatra, K.K.; Amos, W.; Phillips, C. D.; Gelatt, T.S.; Bickham, J.W.
Molecular Ecology
Page URI


Hoffman J, Dasmahapatra KK, Amos W, Phillips CD, Gelatt TS, Bickham JW. Contrasting patterns of genetic diversity at three different genetic markers in a marine mammal metapopulation. Molecular Ecology. 2009;18(14):2961-2978.
Hoffman, J., Dasmahapatra, K. K., Amos, W., Phillips, C. D., Gelatt, T. S., & Bickham, J. W. (2009). Contrasting patterns of genetic diversity at three different genetic markers in a marine mammal metapopulation. Molecular Ecology, 18(14), 2961-2978.
Hoffman, J., Dasmahapatra, K. K., Amos, W., Phillips, C. D., Gelatt, T. S., and Bickham, J. W. (2009). Contrasting patterns of genetic diversity at three different genetic markers in a marine mammal metapopulation. Molecular Ecology 18, 2961-2978.
Hoffman, J., et al., 2009. Contrasting patterns of genetic diversity at three different genetic markers in a marine mammal metapopulation. Molecular Ecology, 18(14), p 2961-2978.
J. Hoffman, et al., “Contrasting patterns of genetic diversity at three different genetic markers in a marine mammal metapopulation”, Molecular Ecology, vol. 18, 2009, pp. 2961-2978.
Hoffman, J., Dasmahapatra, K.K., Amos, W., Phillips, C.D., Gelatt, T.S., Bickham, J.W.: Contrasting patterns of genetic diversity at three different genetic markers in a marine mammal metapopulation. Molecular Ecology. 18, 2961-2978 (2009).
Hoffman, Joseph, Dasmahapatra, K.K., Amos, W., Phillips, C. D., Gelatt, T.S., and Bickham, J.W. “Contrasting patterns of genetic diversity at three different genetic markers in a marine mammal metapopulation”. Molecular Ecology 18.14 (2009): 2961-2978.

15 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Cultural Transmission of Fine-Scale Fidelity to Feeding Sites May Shape Humpback Whale Genetic Diversity in Russian Pacific Waters.
Richard G, Titova OV, Fedutin ID, Steel D, Meschersky IG, Hautin M, Burdin AM, Hoyt E, Filatova OA, Jung JL., J Hered 109(7), 2018
PMID: 30184088
Population structure and historical demography of South American sea lions provide insights into the catastrophic decline of a marine mammal population.
Hoffman JI, Kowalski GJ, Klimova A, Eberhart-Phillips LJ, Staniland IJ, Baylis AM., R Soc Open Sci 3(7), 2016
PMID: 27493782
Low Spatial Genetic Differentiation Associated with Rapid Recolonization in the New Zealand Fur Seal Arctocephalus forsteri.
Dussex N, Robertson BC, Salis AT, Kalinin A, Best H, Gemmell NJ., J Hered 107(7), 2016
PMID: 27563072
Fine-scale matrilineal population structure in the Galapagos fur seal and its implications for conservation management
Lopes F, Hoffman JI, Valiati VH, Bonatto SL, Wolf JBW, Trillmich F, Oliveira LR., Conserv Genet 16(5), 2015
PMID: IND604394511
Global population structure and demographic history of the grey seal.
Klimova A, Phillips CD, Fietz K, Olsen MT, Harwood J, Amos W, Hoffman JI., Mol Ecol 23(16), 2014
PMID: 25041117
Mitochondrial DNA variation, but not nuclear DNA, sharply divides morphologically identical chameleons along an ancient geographic barrier.
Bar Yaacov D, Arbel-Thau K, Zilka Y, Ovadia O, Bouskila A, Mishmar D., PLoS One 7(3), 2012
PMID: 22457709
Pleistocene survival on central Alpine nunataks: genetic evidence from the jumping bristletail Machilis pallida.
Wachter GA, Arthofer W, Dejaco T, Rinnhofer LJ, Steiner FM, Schlick-Steiner BC., Mol Ecol 21(20), 2012
PMID: 22994297
A population on the edge: genetic diversity and population structure of the world's northernmost harbour seals (Phoca vitulina)
PMID: IND44478398
Bayesian inference of a historical bottleneck in a heavily exploited marine mammal.
Hoffman JI, Grant SM, Forcada J, Phillips CD., Mol Ecol 20(19), 2011
PMID: 21895820
Editorial and retrospective 2010.
Rieseberg L, Vines T, Kane N., Mol Ecol 19(1), 2010
PMID: 20078766
Mendez M., Mitochondrial DNA 20(5-6), 2009
PMID: 19900057

100 References

Daten bereitgestellt von Europe PubMed Central.

Inbreeding: Disease susceptibility in California sea lions.
Acevedo-Whitehouse K, Gulland F, Greig D, Amos W., Nature 422(6927), 2003
PMID: 12621424
AFLP markers for DNA fingerprinting in cattle.
Ajmone-Marsan P, Valentini A, Cassandro M, Vecchiotti-Antaldi G, Bertoni G, Kuiper M., Anim. Genet. 28(6), 1997
PMID: 9589583
Habitat fragmentation causes bottlenecks and inbreeding in the European tree frog (Hyla arborea
Andersen, Proceedings of the Royal Society B: Biological Sciences 271(), 2004
Genetic structure at range edge: low diversity and high inbreeding in Southeast Asian mangrove (Avicennia marina) populations.
Arnaud-Haond S, Teixeira S, Massa SI, Billot C, Saenger P, Coupland G, Duarte CM, Serrao EA., Mol. Ecol. 15(12), 2006
PMID: 17032254
Anthropogenic causes of the Steller sea lion decline and their threat to recovery
Atkinson, Mammal Review 38(), 2008
Variation of mitochondrial control region sequences of Steller sea lions: the three-stock hypothesis
Baker, Journal of Mammalogy 86(), 2005
The incomplete natural history of mitochondria.
Ballard JW, Whitlock MC., Mol. Ecol. 13(4), 2004
PMID: 15012752
Ten years of AFLP in ecology and evolution: why so few animals?
Bensch S, Akesson M., Mol. Ecol. 14(10), 2005
PMID: 16101761
High variability for control-region sequences in a marine mammal: implications for conservation and biogeography of Steller sea lions (Eumetopias jubatus
Bickham, Journal of Mammalogy 77(), 1996
Genetic variability and population decline in Steller sea lions from the Gulf of Alaska
Bickham, Journal of Mammalogy 79(), 1998
Conservation genetics of the sonoma tree vole (Arborimus pomo) based on mitochondrial and amplified fragment length polymorphism markers
Blois, Journal of Mammalogy 87(), 2006
How to track and assess genotyping errors in population genetics studies.
Bonin A, Bellemain E, Bronken Eidesen P, Pompanon F, Brochmann C, Taberlet P., Mol. Ecol. 13(11), 2004
PMID: 15487987
Microsatellites from the Atlantic walrus Odobenus rosmarus rosmarus.
Buchanan FC, Maiers LD, Thue TD, De March BG, Stewart RE., Mol. Ecol. 7(8), 1998
PMID: 9711867

Campbell, 2003
Islands in the sea: extreme female natal site fidelity in the Australian sea lion, Neophoca cinerea
Campbell, Biology Letters 4(), 2007
Parasite-mediated selection against inbred Soay sheep in a free-living, island population.
Coltman DW, Pilkington JG, Smith JA, Pemberton JM., Evolution 53(4), 1999
PMID: IND22030991
Panmictic population structure in the hooded seal (Cystophora cristata).
Coltman DW, Stenson G, Hammill MO, Haug T, Davis CS, Fulton TL., Mol. Ecol. 16(8), 2007
PMID: 17402979

Crawley, 2002
Pinniped phylogenetic relationships inferred using AFLP markers
Dasmahapatra, Heredity (), 0
Dinucleotide microsatellite markers from the Antarctic seals and their use in other pinnipeds
Davis, Molecular Ecology Notes 2(), 2002
Inference of population structure using multilocus genotype data: dominant markers and null alleles
FALUSH D, STEPHENS M, PRITCHARD JK., Mol. Ecol. Notes 7(4), 2007
PMID: IND43929538

Felsenstein, 1993
Patterns of colonization in a metapopulation of grey seals.
Gaggiotti OE, Jones F, Lee WM, Amos W, Harwood J, Nichols RA., Nature 416(6879), 2002
PMID: 11919630
Variation in the mitochondrial control region in the Juan Fernandez fur seal (Arctocephalus philippii).
Goldsworthy S, Francis J, Boness D, Fleischer R., J. Hered. 91(5), 2000
PMID: 10994703
fstat (version 1.2): a computer program to calculate F-statistics
Goudet, Journal of Heredity 86(), 1995
Glacial refugia and the phylogeography of Steller's sea lion (Eumetopias jubatus) in the North Pacific
Harlin-Cognato, Journal of Evolutionary Biology 19(), 2005
New polymorphic microsatellite markers for California sea lions (Zalophus californianus
Hernandez-Velazquez, Molecular Ecology Notes 5(), 2005
Phylogeny and divergence of the pinnipeds (Carnivora: Mammalia) assessed using a multigene dataset.
Higdon JW, Bininda-Emonds OR, Beck RM, Ferguson SH., BMC Evol. Biol. 7(), 2007
PMID: 17996107
Palaeolimnology of Antarctic fur seal Arctocephalus gazella populations and implications for Antarctic management
Hodgson, Biological Conservation 83(), 1998
Elephant seal genetic variation and the use of simulation models to investigate historical population bottlenecks.
Hoelzel AR, Halley J, O'Brien SJ, Campagna C, Arnbom T, Le Boeuf B, Ralls K, Dover GA., J. Hered. 84(6), 1993
PMID: 7505788
Alpha-male paternity in elephant seals
Hoelzel, Behavioral Ecology Sociobiology 46(), 1999

Characterization of eight microsatellite loci in Steller sea lions (Eumetopias jubatus)
PMID: IND43974463
Emprical evalution of a test for identifying recently bottlenecked populations from allele frequency data
Luikart, Conservation Biology 12(), 1998
Reproducibility of RAPD, AFLP and SSR markers in plants by a network of European laboratories.
Jones CJ, Edwards KJ, Castaglione S, Winfield MO, Sala F, Wiel Cvande, Bredemeijer G, Vosman B, Matthes M, Daly S., Mol. Breed. 3(5), 1997
PMID: IND21234393
G(ST) and its relatives do not measure differentiation.
Jost L., Mol. Ecol. 17(18), 2008
PMID: 19238703
Abundance and distribution of the Steller sea lion
Kenyon, Journal of Mammalogy 42(), 1961
Genetic diversity and condition factor: a significant relationship in Flemish but not in German populations of the European bullhead (Cottus gobio L.).
Knaepkens G, Knapen D, Bervoets L, Hanfling B, Verheyen E, Eens M., Heredity (Edinb) 89(4), 2002
PMID: 12242644
Low genetic variability in the Hawaiian monk seal
Kretzmann, Conservation Biology 11(), 1997

Lidicker, 1981

Liedloff, 1999
An accounting of the sources of Steller sea lion, Eumetopias jubatus, mortality
Loughlin, Marine Fisheries Review 62(), 2000
Range-wide survey and estimation of total number of Steller sea lions in 1989
Loughlin, Marine Mammal Science 8(), 1992
Intraspecific genetic differentiation in California sea lions (Zalophus californianus) from Southern California and the Gulf of California
Maldonado, Marine Mammal Science 11(), 1995
Geography is a better determinant of human genetic differentiation than ethnicity.
Manica A, Prugnolle F, Balloux F., Hum. Genet. 118(3-4), 2005
PMID: 16189711
Mitochondrial DNA sequence data of the Cape fur seal (Arctocephalus pusillus pusillus) suggest that population numbers maybe affected by climatic shifts
Matthee, Marine Biology 148(), 2006
Almost forgotten or latest practice? AFLP applications, analyses and advances.
Meudt HM, Clarke AC., Trends Plant Sci. 12(3), 2007
PMID: 17303467
Strong population substructure is correlated with morphology and ecology in a migratory bat.
Miller-Butterworth CM, Jacobs DS, Harley EH., Nature 424(6945), 2003
PMID: 12853955
Surviving with low genetic diversity: the case of albatrosses.
Milot, Proceedings of the Royal Society B: Biological Sciences 274(), 2007

Nei, 1987
Demographic independence along ecosystem boundaries in Steller sea lions revealed by mtDNA analysis: implications for management of an endangered species
O’Corry-Crowe, Canadian Journal of Zoology 84(), 2007
Inferring evolutionary processes from phylogenies
Pagel, Zoologica Scripta (Journal of the Royal Swedish Academy) 25th Anniversary Special Issue on Phylogenetics and Systematics 26(), 1997
The maximum likelihood approach to reconstructing ancestral character states of discrete characters on phylogenies
Pagel, Systematic Biology 48(), 1999
Systematics of Steller Sea Lions (Eumetopias jubatus): Subspecies Recognition Based on Concordance of Genetics and Morphometrics
Philips, Occasional Papers, Museum of Texas Tech University 283(), 2009
BOTTLENECK: a computer program for detecting recent reductions in the effective population size using allele frequency data
Piry, Journal of Heredity 90(), 1999
Genotyping errors: causes, consequences and solutions.
Pompanon F, Bonin A, Bellemain E, Taberlet P., Nat. Rev. Genet. 6(11), 2005
PMID: 16304600
Inference of population structure using multilocus genotype data.
Pritchard JK, Stephens M, Donnelly P., Genetics 155(2), 2000
PMID: 10835412
Geography predicts neutral genetic diversity of human populations.
Prugnolle F, Manica A, Balloux F., Curr. Biol. 15(5), 2005
PMID: 15753023

R, 2005
Correlation between fitness and genetic diversity
Reed, Conservation Biology 17(), 2003
Microsatellite heterozygosity, fitness and demography in natterjack toads Bufo calamita
Rowe, Animal Conservation 2(), 1999
Inbreeding and extinction in a butterfly metapopulation
Saccheri, Nature 392(), 1998

Sambrook, 1989
The evolution of molecular markers--just a matter of fashion?
Schlotterer C., Nat. Rev. Genet. 5(1), 2004
PMID: 14666112

Schneider, 2000
Landscape location affects genetic variation of Canada lynx (Lynx canadensis).
Schwartz MK, Mills LS, Ortega Y, Ruggiero LF, Allendorf FW., Mol. Ecol. 12(7), 2003
PMID: 12803633
Heterosis for neonatal survival in the guppy
Shikano, Journal of Fish Biology 60(), 2002
Worldwide patterns of mitochondrial DNA differentiation in the harbor seal (Phoca vitulina).
Stanley HF, Casey S, Carnahan JM, Goodman S, Harwood J, Wayne RK., Mol. Biol. Evol. 13(2), 1996
PMID: 8587502
MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.
Tamura K, Dudley J, Nei M, Kumar S., Mol. Biol. Evol. 24(8), 2007
PMID: 17488738
The effects of inbreeding on mortality during a morbillivirus outbreak in the Mediterranean striped dolphin (Stenella coeruleoalba
Valsecchi, Animal Conservation 7(), 2004
Linking heterozygosity, demography, and fitness of tropical populations of Liomys pictus
Vazquez-Dominguez, Journal of Mammalogy 80(), 1999

Vekemans, 2002
AFLP: a new technique for DNA fingerprinting.
Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M., Nucleic Acids Res. 23(21), 1995
PMID: 7501463
Nuclear DNA microsatellite analysis of genetic diversity and gene flow in the Scandinavian brown bear (Ursus arctos).
Waits L, Taberlet P, Swenson JE, Sandegren F, Franzen R., Mol. Ecol. 9(4), 2000
PMID: 10736045
An empirical genetic assessment of the severity of the northern elephant seal population bottleneck.
Weber DS, Stewart BS, Garza JC, Lehman N., Curr. Biol. 10(20), 2000
PMID: 11069110
Disease ecology in the Galapagos hawk (Buteo galapagoensis): host diversity, parasite load and natural antibodies.
Whiteman, Proceedings of the Royal Society B: Biological Sciences 273(), 2006
Development of new microsatellite loci and evaluation of loci from other pinniped species for the Galapagos sea lion (Zalophus californianus wollebaeki
Wolf, Conservation Genetics 7(), 2005
The genetical structure of populations.
WRIGHT S., Ann Eugen 15(4), 1951
PMID: 24540312
Postsealing genetic variation and population structure of two species of fur seal (Arctocephalus gazella and A. tropicalis).
Wynen LP, Goldsworthy SD, Guinet C, Bester MN, Boyd IL, Gjertz I, Hofmeyr GJ, White RW, Slade R., Mol. Ecol. 9(3), 2000
PMID: 10736028


Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®


PMID: 19500256
PubMed | Europe PMC

Suchen in

Google Scholar