Evidence that two main bottleneck events shaped modern human genetic diversity

Amos, W.; Hoffman, Joseph

Evidence that two main bottleneck events shaped modern human genetic diversity

Amos W, Hoffman J (2010)
Proceedings of the Royal Society, Series B 277(1678): 131-137.

Zeitschriftenaufsatz | Veröffentlicht | Englisch

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DOI

https://doi.org/10.1098/rspb.2009.1473

Autor*in

Amos, W.; Hoffman, Joseph^UniBi

Einrichtung

Fakultät für Biologie

Erscheinungsjahr

2010

Zeitschriftentitel

Proceedings of the Royal Society, Series B

Band

277

Ausgabe

1678

Seite(n)

131-137

ISSN

0962-8452

eISSN

1471-2954

Page URI

https://pub.uni-bielefeld.de/record/2399116

Zitieren

Amos W, Hoffman J. Evidence that two main bottleneck events shaped modern human genetic diversity. Proceedings of the Royal Society, Series B. 2010;277(1678):131-137.

Amos, W., & Hoffman, J. (2010). Evidence that two main bottleneck events shaped modern human genetic diversity. Proceedings of the Royal Society, Series B, 277(1678), 131-137. https://doi.org/10.1098/rspb.2009.1473

Amos, W., and Hoffman, Joseph. 2010. “Evidence that two main bottleneck events shaped modern human genetic diversity”. Proceedings of the Royal Society, Series B 277 (1678): 131-137.

Amos, W., and Hoffman, J. (2010). Evidence that two main bottleneck events shaped modern human genetic diversity. Proceedings of the Royal Society, Series B 277, 131-137.

Amos, W., & Hoffman, J., 2010. Evidence that two main bottleneck events shaped modern human genetic diversity. Proceedings of the Royal Society, Series B, 277(1678), p 131-137.

W. Amos and J. Hoffman, “Evidence that two main bottleneck events shaped modern human genetic diversity”, Proceedings of the Royal Society, Series B, vol. 277, 2010, pp. 131-137.

Amos, W., Hoffman, J.: Evidence that two main bottleneck events shaped modern human genetic diversity. Proceedings of the Royal Society, Series B. 277, 131-137 (2010).

Amos, W., and Hoffman, Joseph. “Evidence that two main bottleneck events shaped modern human genetic diversity”. Proceedings of the Royal Society, Series B 277.1678 (2010): 131-137.

Daten bereitgestellt von European Bioinformatics Institute (EBI)

22 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Patterns of variation in cis-regulatory regions: examining evidence of purifying selection.
Naidoo T, Sjödin P, Schlebusch C, Jakobsson M., BMC Genomics 19(1), 2018
PMID: 29373957

Uncommon Filaggrin Variants Are Associated with Persistent Atopic Dermatitis in African Americans.
Margolis DJ, Mitra N, Gochnauer H, Wubbenhorst B, D'Andrea K, Kraya A, Hoffstad O, Gupta J, Kim B, Yan A, Fuxench ZC, Nathanson KL., J Invest Dermatol 138(7), 2018
PMID: 29428354

Hominoid intraspecific cranial variation mirrors neutral genetic diversity.
Zichello JM, Baab KL, McNulty KP, Raxworthy CJ, Steiper ME., Proc Natl Acad Sci U S A 115(45), 2018
PMID: 30348789

Pharmacogenomic implications of the evolutionary history of infectious diseases in Africa.
Baker JL, Shriner D, Bentley AR, Rotimi CN., Pharmacogenomics J 17(2), 2017
PMID: 27779243

The probability of parallel genetic evolution from standing genetic variation.
MacPherson A, Nuismer SL., J Evol Biol 30(2), 2017
PMID: 27801996

Morphological variation among late holocene Mexicans: Implications for discussions about the human occupation of the Americas.
Herrera B, Peart D, Hernandez N, Spradley K, Hubbe M., Am J Phys Anthropol 163(1), 2017
PMID: 28218396

The triploid East African Highland Banana (EAHB) genepool is genetically uniform arising from a single ancestral clone that underwent population expansion by vegetative propagation.
Kitavi M, Downing T, Lorenzen J, Karamura D, Onyango M, Nyine M, Ferguson M, Spillane C., Theor Appl Genet 129(3), 2016
PMID: 26743524

Diabetes mellitus and the Aboriginal diabetic initiative in Canada: An update review.
Leung L., J Family Med Prim Care 5(2), 2016
PMID: 27843824

Global diversity in the TAS2R38 bitter taste receptor: revisiting a classic evolutionary PROPosal.
Risso DS, Mezzavilla M, Pagani L, Robino A, Morini G, Tofanelli S, Carrai M, Campa D, Barale R, Caradonna F, Gasparini P, Luiselli D, Wooding S, Drayna D., Sci Rep 6(), 2016
PMID: 27138342

Integrating the signatures of demic expansion and archaic introgression in studies of human population genomics.
Sugden LA, Ramachandran S., Curr Opin Genet Dev 41(), 2016
PMID: 27743539

Detecting recent positive selection with high accuracy and reliability by conditional coalescent tree.
Wang M, Huang X, Li R, Xu H, Jin L, He Y., Mol Biol Evol 31(11), 2014
PMID: 25135945

Toward a new history and geography of human genes informed by ancient DNA.
Pickrell JK, Reich D., Trends Genet 30(9), 2014
PMID: 25168683

Population structure in a comprehensive genomic data set on human microsatellite variation.
Pemberton TJ, DeGiorgio M, Rosenberg NA., G3 (Bethesda) 3(5), 2013
PMID: 23550135

On the antiquity of language: the reinterpretation of Neandertal linguistic capacities and its consequences.
Dediu D, Levinson SC., Front Psychol 4(), 2013
PMID: 23847571

Genetic diversity of the HLA-G coding region in Amerindian populations from the Brazilian Amazon: a possible role of natural selection.
Mendes-Junior CT, Castelli EC, Meyer D, Simões AL, Donadi EA., Genes Immun 14(8), 2013
PMID: 24089150

Resequencing data provide no evidence for a human bottleneck in Africa during the penultimate glacial period.
Sjödin P, E Sjöstrand A, Jakobsson M, Blum MG., Mol Biol Evol 29(7), 2012
PMID: 22319141

The great human expansion.
Henn BM, Cavalli-Sforza LL, Feldman MW., Proc Natl Acad Sci U S A 109(44), 2012
PMID: 23077256

Using human demographic history to infer natural selection reveals contrasting patterns on different families of immune genes.
Amos W, Bryant C., Proc Biol Sci 278(1711), 2011
PMID: 21068042

Population-specific links between heterozygosity and the rate human microsatellite evolution.
Amos W., J Mol Evol 72(2), 2011
PMID: 21161201

The early upper Paleolithic of eastern Europe reconsidered.
Hoffecker JF., Evol Anthropol 20(1), 2011
PMID: 22034081

Ancestry and disease in the age of genomic medicine.
Rotimi CN, Jorde LB., N Engl J Med 363(16), 2010
PMID: 20942671

Discriminant analysis of principal components: a new method for the analysis of genetically structured populations.
Jombart T, Devillard S, Balloux F., BMC Genet 11(), 2010
PMID: 20950446

29 References

Daten bereitgestellt von Europe PubMed Central.

Body temperature predicts maximum microsatellite length in mammals.
Amos W, Clarke A., Biol. Lett. 4(4), 2008
PMID: 18522923

Distance from Africa, not climate, explains within-population phenotypic diversity in humans
Betti L., Balloux F., Amos W., Hanihara T., Manica A.., 2008

Cavalli-Sforza L., Piazza A., Menozzi P.., 1994

Mutational processes of simple-sequence repeat loci in human populations.
Di Rienzo A, Peterson AC, Garza JC, Valdes AM, Slatkin M, Freimer NB., Proc. Natl. Acad. Sci. U.S.A. 91(8), 1994
PMID: 8159720

A reevaluation of the Native American mtDNA genome diversity and its bearing on the models of early colonization of Beringia.
Fagundes NJ, Kanitz R, Bonatto SL., PLoS ONE 3(9), 2008
PMID: 18797501

Genetic perspectives on human origins and differentiation
Harpending H., Rogers A.., 2000

Inferring human colonization history using a copying model.
Hellenthal G, Auton A, Falush D., PLoS Genet. 4(5), 2008
PMID: 18497854

On the number of New World founders: a population genetic portrait of the peopling of the Americas.
Hey J., PLoS Biol. 3(6), 2005
PMID: 15898833

Mutation patterns at dinucleotide microsatellite loci in humans.
Huang QY, Xu FH, Shen H, Deng HY, Liu YJ, Liu YZ, Li JL, Recker RR, Deng HW., Am. J. Hum. Genet. 70(3), 2002
PMID: 11793300

Revealing the prehistoric settlement of Australia by Y chromosome and mtDNA analysis.
Hudjashov G, Kivisild T, Underhill PA, Endicott P, Sanchez JJ, Lin AA, Shen P, Oefner P, Renfrew C, Villems R, Forster P., Proc. Natl. Acad. Sci. U.S.A. 104(21), 2007
PMID: 17496137

Mutation rate varies among alleles at a microsatellite locus: phylogenetic evidence
Jin L., Macaubas C., Hallmayer J., Kimura A., Mignot E.., 1996

Signatures of population expansion in microsatellite repeat data.
Kimmel M, Chakraborty R, King JP, Bamshad M, Watkins WS, Jorde LB., Genetics 148(4), 1998
PMID: 9560405

Stepwise mutation model and distribution of allelic frequencies in a finite population.
Kimura M, Ohta T., Proc. Natl. Acad. Sci. U.S.A. 75(6), 1978
PMID: 275857

Equilibrium distributions of microsatellite repeat length resulting from a balance between slippage events and point mutations.
Kruglyak S, Durrett RT, Schug MD, Aquadro CF., Proc. Natl. Acad. Sci. U.S.A. 95(18), 1998
PMID: 9724780

Worldwide human relationships inferred from genome-wide patterns of variation.
Li JZ, Absher DM, Tang H, Southwick AM, Casto AM, Ramachandran S, Cann HM, Barsh GS, Feldman M, Cavalli-Sforza LL, Myers RM., Science 319(5866), 2008
PMID: 18292342

An African origin for the intimate association between humans and Helicobacter pylori.
Linz B, Balloux F, Moodley Y, Manica A, Liu H, Roumagnac P, Falush D, Stamer C, Prugnolle F, van der Merwe SW, Yamaoka Y, Graham DY, Perez-Trallero E, Wadstrom T, Suerbaum S, Achtman M., Nature 445(7130), 2007
PMID: 17287725

A geographically explicit genetic model of worldwide human-settlement history.
Liu H, Prugnolle F, Manica A, Balloux F., Am. J. Hum. Genet. 79(2), 2006
PMID: 16826514

Distortion of allele frequency distributions provides a test for recent population bottlenecks.
Luikart G, Allendorf FW, Cornuet JM, Sherwin WB., J. Hered. 89(3), 1998
PMID: 9656466

The effect of ancient population bottlenecks on human phenotypic variation.
Manica A, Amos W, Balloux F, Hanihara T., Nature 448(7151), 2007
PMID: 17637668

Geography predicts neutral genetic diversity of human populations.
Prugnolle F, Manica A, Balloux F., Curr. Biol. 15(5), 2005
PMID: 15753023

On the capturing of low-energy electrons by DNA.
Ray SG, Daube SS, Naaman R., Proc. Natl. Acad. Sci. U.S.A. 102(1), 2004
PMID: 15615850

Population growth makes waves in the distribution of pairwise genetic differences.
Rogers AR, Harpending H., Mol. Biol. Evol. 9(3), 1992
PMID: 1316531

Informativeness of genetic markers for inference of ancestry.
Rosenberg NA, Li LM, Ward R, Pritchard JK., Am. J. Hum. Genet. 73(6), 2003
PMID: 14631557

Clines, clusters, and the effect of study design on the inference of human population structure
Rosenberg N., Maghajan S., Ramachandran S., Zhao C., Pritchard J., Feldman M.., 2005

High mutation rate of a long microsatellite allele in Drosophila melanogaster provides evidence for allele-specific mutation rates.
Schlotterer C, Ritter R, Harr B, Brem G., Mol. Biol. Evol. 15(10), 1998
PMID: 9787433

Dramatic founder effects in Amerindian mitochondrial DNAs.
Wallace DC, Garrison K, Knowler WC., Am. J. Phys. Anthropol. 68(2), 1985
PMID: 2998196

Genetic variation and population structure in native Americans.
Wang S, Lewis CM, Jakobsson M, Ramachandran S, Ray N, Bedoya G, Rojas W, Parra MV, Molina JA, Gallo C, Mazzotti G, Poletti G, Hill K, Hurtado AM, Labuda D, Klitz W, Barrantes R, Bortolini MC, Salzano FM, Petzl-Erler ML, Tsuneto LT, Llop E, Rothhammer F, Excoffier L, Feldman MW, Rosenberg NA, Ruiz-Linares A., PLoS Genet. 3(11), 2007
PMID: 18039031

Mutation of human short tandem repeats.
Weber JL, Wong C., Hum. Mol. Genet. 2(8), 1993
PMID: 8401493

The direction of microsatellite mutations is dependent upon allele length.
Xu X, Peng M, Fang Z., Nat. Genet. 24(4), 2000
PMID: 10742105

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