The genome of the mesopolyploid crop species Brassica rapa

Wang X, Wang H, Wang J, Sun R, Wu J, Liu S, Bai Y, Mun J-H, Bancroft I, Cheng F, Huang S, et al. (2011)
Nature Genetics 43(10): 1035-1039.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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DOI
Autor*in
Wang, Xiaowu; Wang, Hanzhong; Wang, Jun; Sun, Rifei; Wu, Jian; Liu, Shengyi; Bai, Yinqi; Mun, Jeong-Hwan; Bancroft, Ian; Cheng, Feng; Huang, Sanwen; Li, Xixiang
Alle
Einrichtung
Centrum für Biotechnologie > Arbeitsgruppe B. Weisshaar
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Fakultät für Biologie > Genetik und Genomik der Pflanzen
Abstract / Bemerkung
We report the annotation and analysis of the draft genome sequence of Brassica rapa accession Chiifu-401-42, a Chinese cabbage. We modeled 41,174 protein coding genes in the B. rapa genome, which has undergone genome triplication. We used Arabidopsis thaliana as an outgroup for investigating the consequences of genome triplication, such as structural and functional evolution. The extent of gene loss (fractionation) among triplicated genome segments varies, with one of the three copies consistently retaining a disproportionately large fraction of the genes expected to have been present in its ancestor. Variation in the number of members of gene families present in the genome may contribute to the remarkable morphological plasticity of Brassica species. The B. rapa genome sequence provides an important resource for studying the evolution of polyploid genomes and underpins the genetic improvement of Brassica oil and vegetable crops.
Erscheinungsjahr
2011
Zeitschriftentitel
Nature Genetics
Band
43
Ausgabe
10
Seite(n)
1035-1039
ISSN
1061-4036
eISSN
1546-1718
Page URI
https://pub.uni-bielefeld.de/record/2353318

Zitieren

Wang X, Wang H, Wang J, et al. The genome of the mesopolyploid crop species Brassica rapa. Nature Genetics. 2011;43(10):1035-1039.
Wang, X., Wang, H., Wang, J., Sun, R., Wu, J., Liu, S., Bai, Y., et al. (2011). The genome of the mesopolyploid crop species Brassica rapa. Nature Genetics, 43(10), 1035-1039. https://doi.org/10.1038/ng.919
Wang, Xiaowu, Wang, Hanzhong, Wang, Jun, Sun, Rifei, Wu, Jian, Liu, Shengyi, Bai, Yinqi, et al. 2011. “The genome of the mesopolyploid crop species Brassica rapa”. Nature Genetics 43 (10): 1035-1039.
Wang, X., Wang, H., Wang, J., Sun, R., Wu, J., Liu, S., Bai, Y., Mun, J. - H., Bancroft, I., Cheng, F., et al. (2011). The genome of the mesopolyploid crop species Brassica rapa. Nature Genetics 43, 1035-1039.
Wang, X., et al., 2011. The genome of the mesopolyploid crop species Brassica rapa. Nature Genetics, 43(10), p 1035-1039.
X. Wang, et al., “The genome of the mesopolyploid crop species Brassica rapa”, Nature Genetics, vol. 43, 2011, pp. 1035-1039.
Wang, X., Wang, H., Wang, J., Sun, R., Wu, J., Liu, S., Bai, Y., Mun, J.-H., Bancroft, I., Cheng, F., Huang, S., Li, X., Hua, W., Wang, J., Wang, X., Freeling, M., Pires, J.C., Paterson, A.H., Chalhoub, B., Wang, B., Hayward, A., Sharpe, A.G., Park, B.-S., Weisshaar, B., Liu, B., Li, B., Liu, B., Tong, C., Song, C., Duran, C., Peng, C., Geng, C., Koh, C., Lin, C., Edwards, D., Mu, D., Shen, D., Soumpourou, E., Li, F., Fraser, F., Conant, G., Lassalle, G., King, G.J., Bonnema, G., Tang, H., Wang, H., Belcram, H., Zhou, H., Hirakawa, H., Abe, H., Guo, H., Wang, H., Jin, H., Parkin, I.A.P., Batley, J., Kim, J.-S., Just, J., Li, J., Xu, J., Deng, J., Kim, J.A., Li, J., Yu, J., Meng, J., Wang, J., Min, J., Poulain, J., Wang, J., Hatakeyama, K., Wu, K., Wang, L., Fang, L., Trick, M., Links, M.G., Zhao, M., Jin, M., Ramchiary, N., Drou, N., Berkman, P.J., Cai, Q., Huang, Q., Li, R., Tabata, S., Cheng, S., Zhang, S., Zhang, S., Huang, S., Sato, S., Sun, S., Kwon, S.-J., Choi, S.-R., Lee, T.-H., Fan, W., Zhao, X., Tan, X., Xu, X., Wang, Y., Qiu, Y., Yin, Y., Li, Y., Du, Y., Liao, Y., Lim, Y., Narusaka, Y., Wang, Y., Wang, Z., Li, Z., Wang, Z., Xiong, Z., Zhang, Z.: The genome of the mesopolyploid crop species Brassica rapa. Nature Genetics. 43, 1035-1039 (2011).
Wang, Xiaowu, Wang, Hanzhong, Wang, Jun, Sun, Rifei, Wu, Jian, Liu, Shengyi, Bai, Yinqi, Mun, Jeong-Hwan, Bancroft, Ian, Cheng, Feng, Huang, Sanwen, Li, Xixiang, Hua, Wei, Wang, Junyi, Wang, Xiyin, Freeling, Michael, Pires, J Chris, Paterson, Andrew H, Chalhoub, Boulos, Wang, Bo, Hayward, Alice, Sharpe, Andrew G, Park, Beom-Seok, Weisshaar, Bernd, Liu, Binghang, Li, Bo, Liu, Bo, Tong, Chaobo, Song, Chi, Duran, Christopher, Peng, Chunfang, Geng, Chunyu, Koh, Chushin, Lin, Chuyu, Edwards, David, Mu, Desheng, Shen, Di, Soumpourou, Eleni, Li, Fei, Fraser, Fiona, Conant, Gavin, Lassalle, Gilles, King, Graham J, Bonnema, Guusje, Tang, Haibao, Wang, Haiping, Belcram, Harry, Zhou, Heling, Hirakawa, Hideki, Abe, Hiroshi, Guo, Hui, Wang, Hui, Jin, Huizhe, Parkin, Isobel A P, Batley, Jacqueline, Kim, Jeong-Sun, Just, Jérémy, Li, Jianwen, Xu, Jiaohui, Deng, Jie, Kim, Jin A, Li, Jingping, Yu, Jingyin, Meng, Jinling, Wang, Jinpeng, Min, Jiumeng, Poulain, Julie, Wang, Jun, Hatakeyama, Katsunori, Wu, Kui, Wang, Li, Fang, Lu, Trick, Martin, Links, Matthew G, Zhao, Meixia, Jin, Mina, Ramchiary, Nirala, Drou, Nizar, Berkman, Paul J, Cai, Qingle, Huang, Quanfei, Li, Ruiqiang, Tabata, Satoshi, Cheng, Shifeng, Zhang, Shu, Zhang, Shujiang, Huang, Shunmou, Sato, Shusei, Sun, Silong, Kwon, Soo-Jin, Choi, Su-Ryun, Lee, Tae-Ho, Fan, Wei, Zhao, Xiang, Tan, Xu, Xu, Xun, Wang, Yan, Qiu, Yang, Yin, Ye, Li, Yingrui, Du, Yongchen, Liao, Yongcui, Lim, Yongpyo, Narusaka, Yoshihiro, Wang, Yupeng, Wang, Zhenyi, Li, Zhenyu, Wang, Zhiwen, Xiong, Zhiyong, and Zhang, Zhonghua. “The genome of the mesopolyploid crop species Brassica rapa”. Nature Genetics 43.10 (2011): 1035-1039.

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Genome-wide identification, putative functionality and interactions between lncRNAs and miRNAs in Brassica species.
Zhang J, Wei L, Jiang J, Mason AS, Li H, Cui C, Chai L, Zheng B, Zhu Y, Xia Q, Jiang L, Fu D., Sci Rep 8(1), 2018
PMID: 29563515
FANCM Limits Meiotic Crossovers in Brassica Crops.
Blary A, Gonzalo A, Eber F, Bérard A, Bergès H, Bessoltane N, Charif D, Charpentier C, Cromer L, Fourment J, Genevriez C, Le Paslier MC, Lodé M, Lucas MO, Nesi N, Lloyd A, Chèvre AM, Jenczewski E., Front Plant Sci 9(), 2018
PMID: 29628933
Genome-Wide Identification and Expression Analysis of the Cation Diffusion Facilitator Gene Family in Turnip Under Diverse Metal Ion Stresses.
Li X, Wu Y, Li B, He W, Yang Y, Yang Y., Front Genet 9(), 2018
PMID: 29670641
Genotyping of Plasmodiophora brassicae reveals the presence of distinct populations.
Holtz MD, Hwang SF, Strelkov SE., BMC Genomics 19(1), 2018
PMID: 29661147
Two ancestral genes shaped the Xanthomonas campestris TAL effector gene repertoire.
Denancé N, Szurek B, Doyle EL, Lauber E, Fontaine-Bodin L, Carrère S, Guy E, Hajri A, Cerutti A, Boureau T, Poussier S, Arlat M, Bogdanove AJ, Noël LD., New Phytol 219(1), 2018
PMID: 29677397
Maternal components of RNA-directed DNA methylation are required for seed development in Brassica rapa.
Grover JW, Kendall T, Baten A, Burgess D, Freeling M, King GJ, Mosher RA., Plant J 94(4), 2018
PMID: 29569777
Evolution of genes associated with gynoecium patterning and fruit development in Solanaceae.
Ortiz-Ramírez CI, Plata-Arboleda S, Pabón-Mora N., Ann Bot 121(6), 2018
PMID: 29471367
Phytochrome B regulates resource allocation in Brassica rapa.
Arsovski AA, Zemke JE, Haagen BD, Kim SH, Nemhauser JL., J Exp Bot 69(11), 2018
PMID: 29514292
Genome-Wide Identification, Molecular Evolution, and Expression Profiling Analysis of Pectin Methylesterase Inhibitor Genes in Brassica campestris ssp. chinensis.
Liu T, Yu H, Xiong X, Yue X, Yu Y, Huang L, Cao J., Int J Mol Sci 19(5), 2018
PMID: 29724020
Homoeolog expression bias in allopolyploid oleaginous marine diatom Fistulifera solaris.
Nomaguchi T, Maeda Y, Yoshino T, Asahi T, Tirichine L, Bowler C, Tanaka T., BMC Genomics 19(1), 2018
PMID: 29728068
Pinning down ploidy in paleopolyploid plants.
Zhang Y, Zheng C, Sankoff D., BMC Genomics 19(suppl 5), 2018
PMID: 29745846
Comprehensive analyses of the BES1 gene family in Brassica napus and examination of their evolutionary pattern in representative species.
Song X, Ma X, Li C, Hu J, Yang Q, Wang T, Wang L, Wang J, Guo D, Ge W, Wang Z, Li M, Wang Q, Ren T, Feng S, Wang L, Zhang W, Wang X., BMC Genomics 19(1), 2018
PMID: 29743014
Re-exploration of U's Triangle Brassica Species Based on Chloroplast Genomes and 45S nrDNA Sequences.
Kim CK, Seol YJ, Perumal S, Lee J, Waminal NE, Jayakodi M, Lee SC, Jin S, Choi BS, Yu Y, Ko HC, Choi JW, Ryu KY, Sohn SH, Parkin I, Yang TJ., Sci Rep 8(1), 2018
PMID: 29743507
The DNA Methylome and Association of Differentially Methylated Regions with Differential Gene Expression during Heat Stress in Brassica rapa.
Liu G, Xia Y, Liu T, Dai S, Hou X., Int J Mol Sci 19(5), 2018
PMID: 29747401
Highly preserved roles of Brassica MIR172 in polyploid Brassicas: ectopic expression of variants of Brassica MIR172 accelerates floral transition.
Shivaraj SM, Jain A, Singh A., Mol Genet Genomics 293(5), 2018
PMID: 29752548
Transcriptome Analysis in Chinese Cabbage (Brassica rapa ssp. pekinensis) Provides the Role of Glucosinolate Metabolism in Response to Drought Stress.
Eom SH, Baek SA, Kim JK, Hyun TK., Molecules 23(5), 2018
PMID: 29762546
Defence signalling marker gene responses to hormonal elicitation differ between roots and shoots.
Papadopoulou GV, Maedicke A, Grosser K, van Dam NM, Martínez-Medina A., AoB Plants 10(3), 2018
PMID: 29977487
Identification and Mapping of the Clubroot Resistance Gene CRd in Chinese Cabbage (Brassica rapa ssp. pekinensis).
Pang W, Fu P, Li X, Zhan Z, Yu S, Piao Z., Front Plant Sci 9(), 2018
PMID: 29868100
Histone lysine methyltransferases BnaSDG8.A and BnaSDG8.C are involved in the floral transition in Brassica napus.
Jiang L, Li D, Jin L, Ruan Y, Shen WH, Liu C., Plant J (), 2018
PMID: 29797624
Genome-Wide Identification, Classification, and Expression Divergence of Glutathione-Transferase Family in Brassica rapa under Multiple Hormone Treatments.
Khan N, Hu CM, Amjad Khan W, Hou X., Biomed Res Int 2018(), 2018
PMID: 29992155
Finding invisible quantitative trait loci with missing data.
Gabur I, Chawla HS, Liu X, Kumar V, Faure S, von Tiedemann A, Jestin C, Dryzska E, Volkmann S, Breuer F, Delourme R, Snowdon R, Obermeier C., Plant Biotechnol J 16(12), 2018
PMID: 29729219
Comparative transcriptomics reveals shared gene expression changes during independent evolutionary origins of stem and hypocotyl/root tubers in Brassica (Brassicaceae).
Hearn DJ, O'Brien P, Poulsen TM., PLoS One 13(6), 2018
PMID: 29856865
Overexpression of BraLTP2, a Lipid Transfer Protein of Brassica napus, Results in Increased Trichome Density and Altered Concentration of Secondary Metabolites.
Tian N, Liu F, Wang P, Yan X, Gao H, Zeng X, Wu G., Int J Mol Sci 19(6), 2018
PMID: 29895724
Genome re-sequencing, SNP analysis, and genetic mapping of the parental lines of a commercial F1 hybrid cultivar of Chinese cabbage.
Shea DJ, Shimizu M, Itabashi E, Miyaji N, Miyazaki J, Osabe K, Kaji M, Okazaki K, Fujimoto R., Breed Sci 68(3), 2018
PMID: 30100805
Ectopic expression of a Brassica rapa AINTEGUMENTA gene (BrANT-1) increases organ size and stomatal density in Arabidopsis.
Ding Q, Cui B, Li J, Li H, Zhang Y, Lv X, Qiu N, Liu L, Wang F, Gao J., Sci Rep 8(1), 2018
PMID: 30002453
BrFLC5: a weak regulator of flowering time in Brassica rapa.
Xi X, Wei K, Gao B, Liu J, Liang J, Cheng F, Wang X, Wu J., Theor Appl Genet 131(10), 2018
PMID: 30008108
GinMicrosatDb: a genome-wide microsatellite markers database for sesame (Sesamum indicum L.).
Purru S, Sahu S, Rai S, Rao AR, Bhat KV., Physiol Mol Biol Plants 24(5), 2018
PMID: 30150867
Mining of Brassica-Specific Genes (BSGs) and Their Induction in Different Developmental Stages and under Plasmodiophora brassicae Stress in Brassica rapa.
Jiang M, Dong X, Lang H, Pang W, Zhan Z, Li X, Piao Z., Int J Mol Sci 19(7), 2018
PMID: 30012965
Genome-Wide Characterization and Analysis of Metallothionein Family Genes That Function in Metal Stress Tolerance in Brassica napus L.
Pan Y, Zhu M, Wang S, Ma G, Huang X, Qiao C, Wang R, Xu X, Liang Y, Lu K, Li J, Qu C., Int J Mol Sci 19(8), 2018
PMID: 30049941
Detecting de Novo Homoeologous Recombination Events in Cultivated Brassica napus Using a Genome-Wide SNP Array.
Higgins EE, Clarke WE, Howell EC, Armstrong SJ, Parkin IAP., G3 (Bethesda) 8(8), 2018
PMID: 29907649
Genomics-Assisted Identification and Characterization of the Genetic Variants Underlying Differential Nitrogen Use Efficiencies in Allotetraploid Rapeseed Genotypes.
Hua YP, Zhou T, Liao Q, Song HX, Guan CY, Zhang ZH., G3 (Bethesda) 8(8), 2018
PMID: 29967053
Transcriptional and translational responses of rapeseed leaves to red and blue lights at the rosette stage.
Chang SX, Pu C, Guan RZ, Pu M, Xu ZG., J Zhejiang Univ Sci B 19(8), 2018
PMID: 30070082
Genome-wide survey, characterization, and expression analysis of RING finger protein genes in Brassica oleracea and their syntenic comparison to Brassica rapa and Arabidopsis thaliana.
Yang YQ, Lu YH., Genome 61(9), 2018
PMID: 30075086
Genome-Wide Identification and Analysis of Polygalacturonase Genes in Solanum lycopersicum.
Ke X, Wang H, Li Y, Zhu B, Zang Y, He Y, Cao J, Zhu Z, Yu Y., Int J Mol Sci 19(8), 2018
PMID: 30081560
Homoeolog expression bias and expression level dominance in resynthesized allopolyploid Brassica napus.
Wu J, Lin L, Xu M, Chen P, Liu D, Sun Q, Ran L, Wang Y., BMC Genomics 19(1), 2018
PMID: 30081834
Improved Brassica rapa reference genome by single-molecule sequencing and chromosome conformation capture technologies.
Zhang L, Cai X, Wu J, Liu M, Grob S, Cheng F, Liang J, Cai C, Liu Z, Liu B, Wang F, Li S, Liu F, Li X, Cheng L, Yang W, Li MH, Grossniklaus U, Zheng H, Wang X., Hortic Res 5(), 2018
PMID: 30131865
Systematic identification of long non-coding RNAs during pollen development and fertilization in Brassica rapa.
Huang L, Dong H, Zhou D, Li M, Liu Y, Zhang F, Feng Y, Yu D, Lin S, Cao J., Plant J 96(1), 2018
PMID: 29975432
Spatio-temporal expression dynamics differ between homologues of flowering time genes in the allopolyploid Brassica napus.
Jones DM, Wells R, Pullen N, Trick M, Irwin JA, Morris RJ., Plant J 96(1), 2018
PMID: 29989238
Evolution and Expression Divergence of E2 Gene Family under Multiple Abiotic and Phytohormones Stresses in Brassica rapa.
Khan N, Hu CM, Amjad Khan W, Naseri E, Ke H, Huijie D, Hou X., Biomed Res Int 2018(), 2018
PMID: 30225257
A High-Density Genetic Map of an Allohexaploid Brassica Doubled Haploid Population Reveals Quantitative Trait Loci for Pollen Viability and Fertility.
Yang S, Chen S, Zhang K, Li L, Yin Y, Gill RA, Yan G, Meng J, Cowling WA, Zhou W., Front Plant Sci 9(), 2018
PMID: 30210508
Genome-Wide DNA Methylation Comparison between Brassica napus Genic Male Sterile Line and Restorer Line.
Wang Z, Wu X, Wu Z, An H, Yi B, Wen J, Ma C, Shen J, Fu T, Tu J., Int J Mol Sci 19(9), 2018
PMID: 30201884
Variability in eukaryotic initiation factor iso4E in Brassica rapa influences interactions with the viral protein linked to the genome of Turnip mosaic virus.
Li G, Qian W, Zhang S, Zhang S, Li F, Zhang H, Fang Z, Wu J, Wang X, Sun R., Sci Rep 8(1), 2018
PMID: 30206242
A Robust Methodology for Assessing Differential Homeolog Contributions to the Transcriptomes of Allopolyploids.
Boatwright JL, McIntyre LM, Morse AM, Chen S, Yoo MJ, Koh J, Soltis PS, Soltis DE, Barbazuk WB., Genetics 210(3), 2018
PMID: 30213855
Exploring transcription factors reveals crucial members and regulatory networks involved in different abiotic stresses in Brassica napus L.
Wang P, Yang C, Chen H, Luo L, Leng Q, Li S, Han Z, Li X, Song C, Zhang X, Wang D., BMC Plant Biol 18(1), 2018
PMID: 30231862
Microsynteny analysis to understand evolution and impact of polyploidization on MIR319 family within Brassicaceae.
Joshi G, Chauhan C, Das S., Dev Genes Evol 228(6), 2018
PMID: 30242472
Comparative analysis of the genetic variability within the Q-type C2H2 zinc-finger transcription factors in the economically important cabbage, canola and Chinese cabbage genomes.
Lawrence SD, Novak NG., Hereditas 155(), 2018
PMID: 30258345
Genome-wide identification and characterization of CONSTANS-like gene family in radish (Raphanus sativus).
Hu T, Wei Q, Wang W, Hu H, Mao W, Zhu Q, Bao C., PLoS One 13(9), 2018
PMID: 30248137
Genome-wide characterization of DNA methylation, small RNA expression, and histone H3 lysine nine di-methylation in Brassica rapa L.
Takahashi S, Osabe K, Fukushima N, Takuno S, Miyaji N, Shimizu M, Takasaki-Yasuda T, Suzuki Y, Dennis ES, Seki M, Fujimoto R., DNA Res 25(5), 2018
PMID: 29982343
Bias in resistance gene prediction due to repeat masking.
Bayer PE, Edwards D, Batley J., Nat Plants 4(10), 2018
PMID: 30287950
Comparative analysis of cytokinin response factors in Brassica diploids and amphidiploids and insights into the evolution of Brassica species.
Kong L, Zhao K, Gao Y, Miao L, Chen C, Deng H, Liu Z, Yu X., BMC Genomics 19(1), 2018
PMID: 30285607
QTL Landscape for Oil Content in Brassica juncea: Analysis in Multiple Bi-Parental Populations in High and "0" Erucic Background.
Rout K, Yadav BG, Yadava SK, Mukhopadhyay A, Gupta V, Pental D, Pradhan AK., Front Plant Sci 9(), 2018
PMID: 30386353
Species-Wide Variation in Shoot Nitrate Concentration, and Genetic Loci Controlling Nitrate, Phosphorus and Potassium Accumulation in Brassica napus L.
Alcock TD, Havlickova L, He Z, Wilson L, Bancroft I, White PJ, Broadley MR, Graham NS., Front Plant Sci 9(), 2018
PMID: 30386356
Genome-Wide Identification and Characterization of Pectin Methylesterase Inhibitor Genes in Brassica oleracea.
Liu T, Yu H, Xiong X, Yu Y, Yue X, Liu J, Cao J., Int J Mol Sci 19(11), 2018
PMID: 30373125
Genome-wide Identification, Classification, and Expression Pattern of Homeobox Gene Family in Brassica rapa under Various Stresses.
Khan N, Hu CM, Khan WA, Wang W, Ke H, Huijie D, Zhishuo Z, Hou X., Sci Rep 8(1), 2018
PMID: 30389998
Developmental Stage and Shape of Embryo Determine the Efficacy of Embryo Rescue in Introgressing Orange/Yellow Color and Anthocyanin Genes of Brassica Species.
Pen S, Nath UK, Song S, Goswami G, Lee JH, Jung HJ, Kim HT, Park JI, Nou IS., Plants (Basel) 7(4), 2018
PMID: 30428562
Genome-Wide Identification of Flowering-Time Genes in Brassica Species and Reveals a Correlation between Selective Pressure and Expression Patterns of Vernalization-Pathway Genes in Brassica napus.
Li H, Fan Y, Yu J, Chai L, Zhang J, Jiang J, Cui C, Zheng B, Jiang L, Lu K., Int J Mol Sci 19(11), 2018
PMID: 30453667
BrRLP48, Encoding a Receptor-Like Protein, Involved in Downy Mildew Resistance in Brassica rapa.
Zhang B, Li P, Su T, Li P, Xin X, Wang W, Zhao X, Yu Y, Zhang D, Yu S, Zhang F., Front Plant Sci 9(), 2018
PMID: 30532761
Transcriptional regulation of anthocyanin biosynthesis in a high-anthocyanin resynthesized Brassica napus cultivar.
Goswami G, Nath UK, Park JI, Hossain MR, Biswas MK, Kim HT, Kim HR, Nou IS., J Biol Res (Thessalon) 25(), 2018
PMID: 30505808
Genome-Wide Analysis of Parent-of-Origin Allelic Expression in Endosperms of Brassicaceae Species, Brassica rapa.
Yoshida T, Kawanabe T, Bo Y, Fujimoto R, Kawabe A., Plant Cell Physiol 59(12), 2018
PMID: 30165552
Integrated physiologic, genomic and transcriptomic strategies involving the adaptation of allotetraploid rapeseed to nitrogen limitation.
Zhang ZH, Zhou T, Liao Q, Yao JY, Liang GH, Song HX, Guan CY, Hua YP., BMC Plant Biol 18(1), 2018
PMID: 30509163
Translating Flowering Time From Arabidopsis thaliana to Brassicaceae and Asteraceae Crop Species.
Leijten W, Koes R, Roobeek I, Frugis G., Plants (Basel) 7(4), 2018
PMID: 30558374
Several phased siRNA annotation methods can frequently misidentify 24 nucleotide siRNA-dominated PHAS loci.
Polydore S, Lunardon A, Axtell MJ., Plant Direct 2(12), 2018
PMID: 31245701
Genome-wide analysis and stress-responsive expression of CCCH zinc finger family genes in Brassica rapa.
Pi B, He X, Ruan Y, Jang JC, Huang Y., BMC Plant Biol 18(1), 2018
PMID: 30587139
The poor lonesome A subgenome of Brassica napus var. Darmor (AACC) may not survive without its mate.
Pelé A, Trotoux G, Eber F, Lodé M, Gilet M, Deniot G, Falentin C, Nègre S, Morice J, Rousseau-Gueutin M, Chèvre AM., New Phytol 213(4), 2017
PMID: 27575298
Characterization of the cinnamoyl-CoA reductase (CCR) gene family in Populus tomentosa reveals the enzymatic active sites and evolution of CCR.
Chao N, Li N, Qi Q, Li S, Lv T, Jiang XN, Gai Y., Planta 245(1), 2017
PMID: 27580618
Map-based cloning of the dominant genic male sterile Ms-cd1 gene in cabbage (Brassica oleracea).
Liang J, Ma Y, Wu J, Cheng F, Liu B, Wang X., Theor Appl Genet 130(1), 2017
PMID: 27704179
Genetic dissection of seed weight by QTL analysis and detection of allelic variation in Indian and east European gene pool lines of Brassica juncea.
Dhaka N, Rout K, Yadava SK, Sodhi YS, Gupta V, Pental D, Pradhan AK., Theor Appl Genet 130(2), 2017
PMID: 27744489
Integration of omics approaches to understand oil/protein content during seed development in oilseed crops.
Gupta M, Bhaskar PB, Sriram S, Wang PH., Plant Cell Rep 36(5), 2017
PMID: 27796489
Brassica rapa Genome 2.0: A Reference Upgrade through Sequence Re-assembly and Gene Re-annotation.
Cai C, Wang X, Liu B, Wu J, Liang J, Cui Y, Cheng F, Wang X., Mol Plant 10(4), 2017
PMID: 27890636
Allelism analysis of BrRfp locus in different restorer lines and map-based cloning of a fertility restorer gene, BrRfp1, for pol CMS in Chinese cabbage (Brassica rapa L.).
Zhang H, Wu J, Dai Z, Qin M, Hao L, Ren Y, Li Q, Zhang L., Theor Appl Genet 130(3), 2017
PMID: 27896366
Over-expression of miR158 causes pollen abortion in Brassica campestris ssp. chinensis.
Ma Z, Jiang J, Hu Z, Lyu T, Yang Y, Jiang J, Cao J., Plant Mol Biol 93(3), 2017
PMID: 27909970
The tandem repeated organization of NB-LRR genes in the clubroot-resistant CRb locus in Brassica rapa L.
Hatakeyama K, Niwa T, Kato T, Ohara T, Kakizaki T, Matsumoto S., Mol Genet Genomics 292(2), 2017
PMID: 28013378
Atypical Protein Phosphatase 2A Gene Families Do Not Expand via Paleopolyploidization.
Booker MA, DeLong A., Plant Physiol 173(2), 2017
PMID: 28034953
Polyploidy and the relationship between leaf structure and function: implications for correlated evolution of anatomy, morphology, and physiology in Brassica.
Baker RL, Yarkhunova Y, Vidal K, Ewers BE, Weinig C., BMC Plant Biol 17(1), 2017
PMID: 28056801
Brassica napus DS-3, encoding a DELLA protein, negatively regulates stem elongation through gibberellin signaling pathway.
Zhao B, Li H, Li J, Wang B, Dai C, Wang J, Liu K., Theor Appl Genet 130(4), 2017
PMID: 28093630
The genome sequence of Barbarea vulgaris facilitates the study of ecological biochemistry.
Byrne SL, Erthmann PØ, Agerbirk N, Bak S, Hauser TP, Nagy I, Paina C, Asp T., Sci Rep 7(), 2017
PMID: 28094805
Genome-wide identification, evolution and expression analysis of RING finger protein genes in Brassica rapa.
Alam I, Yang YQ, Wang Y, Zhu ML, Wang HB, Chalhoub B, Lu YH., Sci Rep 7(), 2017
PMID: 28094809
Genome-wide expression profiling of aquaporin genes confer responses to abiotic and biotic stresses in Brassica rapa.
Kayum MA, Park JI, Nath UK, Biswas MK, Kim HT, Nou IS., BMC Plant Biol 17(1), 2017
PMID: 28122509
De novo transcriptome assemblies of four accessions of the metal hyperaccumulator plant Noccaea caerulescens.
Blande D, Halimaa P, Tervahauta AI, Aarts MG, Kärenlampi SO., Sci Data 4(), 2017
PMID: 28140388
A Phylogenetic Analysis of Chloroplast Genomes Elucidates the Relationships of the Six Economically Important Brassica Species Comprising the Triangle of U.
Li P, Zhang S, Li F, Zhang S, Zhang H, Wang X, Sun R, Bonnema G, Borm TJ., Front Plant Sci 8(), 2017
PMID: 28210266
Genome-wide analysis of auxin transport genes identifies the hormone responsive patterns associated with leafy head formation in Chinese cabbage.
Gao LW, Lyu SW, Tang J, Zhou DY, Bonnema G, Xiao D, Hou XL, Zhang CW., Sci Rep 7(), 2017
PMID: 28169368
De novo Transcriptome Assembly of Chinese Kale and Global Expression Analysis of Genes Involved in Glucosinolate Metabolism in Multiple Tissues.
Wu S, Lei J, Chen G, Chen H, Cao B, Chen C., Front Plant Sci 8(), 2017
PMID: 28228764
Comprehensive Analysis of the CDPK-SnRK Superfamily Genes in Chinese Cabbage and Its Evolutionary Implications in Plants.
Wu P, Wang W, Duan W, Li Y, Hou X., Front Plant Sci 8(), 2017
PMID: 28239387
Identification of SSR markers closely linked to the yellow seed coat color gene in heading Chinese cabbage (Brassica rapa L. ssp. pekinensis).
Ren Y, Wu J, Zhao J, Hao L, Zhang L., Biol Open 6(2), 2017
PMID: 28069590
Genome-Wide Association and Transcriptome Analyses Reveal Candidate Genes Underlying Yield-determining Traits in Brassica napus.
Lu K, Peng L, Zhang C, Lu J, Yang B, Xiao Z, Liang Y, Xu X, Qu C, Zhang K, Liu L, Zhu Q, Fu M, Yuan X, Li J., Front Plant Sci 8(), 2017
PMID: 28261256
A user guide to the Brassica 60K Illumina Infinium™ SNP genotyping array.
Mason AS, Higgins EE, Snowdon RJ, Batley J, Stein A, Werner C, Parkin IA., Theor Appl Genet 130(4), 2017
PMID: 28220206
Fine-Mapping and Analysis of Cgl1, a Gene Conferring Glossy Trait in Cabbage (Brassica oleracea L. var. capitata).
Liu Z, Fang Z, Zhuang M, Zhang Y, Lv H, Liu Y, Li Z, Sun P, Tang J, Liu D, Zhang Z, Yang L., Front Plant Sci 8(), 2017
PMID: 28265282
Genetic Transformation and Genomic Resources for Next-Generation Precise Genome Engineering in Vegetable Crops.
Cardi T, D'Agostino N, Tripodi P., Front Plant Sci 8(), 2017
PMID: 28275380
Genome sequencing supports a multi-vertex model for Brassiceae species.
Cheng F, Liang J, Cai C, Cai X, Wu J, Wang X., Curr Opin Plant Biol 36(), 2017
PMID: 28242534
Identification of different cytoplasms based on newly developed mitotype-specific markers for marker-assisted selection breeding in Brassica napus L.
Heng S, Chen F, Wei C, Hu K, Yang Z, Wen J, Yi B, Ma C, Tu J, Si P, Fu T, Shen J., Plant Cell Rep 36(6), 2017
PMID: 28265748
Using mustard genomes to explore the genetic basis of evolutionary change.
Nikolov LA, Tsiantis M., Curr Opin Plant Biol 36(), 2017
PMID: 28285128
Population Structure and Phylogenetic Relationships in a Diverse Panel of Brassica rapa L.
Bird KA, An H, Gazave E, Gore MA, Pires JC, Robertson LD, Labate JA., Front Plant Sci 8(), 2017
PMID: 28348571
Genetics and fine mapping of a purple leaf gene, BoPr, in ornamental kale (Brassica oleracea L. var. acephala).
Liu XP, Gao BZ, Han FQ, Fang ZY, Yang LM, Zhuang M, Lv HH, Liu YM, Li ZS, Cai CC, Yu HL, Li ZY, Zhang YY., BMC Genomics 18(1), 2017
PMID: 28288583
Targeted deep sequencing of flowering regulators in Brassica napus reveals extensive copy number variation.
Schiessl S, Huettel B, Kuehn D, Reinhardt R, Snowdon RJ., Sci Data 4(), 2017
PMID: 28291231
Genome-Wide Identification, Evolution, and Expression Analysis of the ATP-Binding Cassette Transporter Gene Family in Brassica rapa.
Yan C, Duan W, Lyu S, Li Y, Hou X., Front Plant Sci 8(), 2017
PMID: 28367152
Computational Characterization of ncRNA Fragments in Various Tissues of the Brassica rapa Plant.
Byeon B, Bilichak A, Kovalchuk I., Noncoding RNA 3(2), 2017
PMID: 29657288
Genomic, Molecular Evolution, and Expression Analysis of Genes Encoding Putative Classical AGPs, Lysine-Rich AGPs, and AG Peptides in Brassica rapa.
Han T, Dong H, Cui J, Li M, Lin S, Cao J, Huang L., Front Plant Sci 8(), 2017
PMID: 28424711
Eukaryotic translation initiation factor 2B-beta (eIF2Bβ), a new class of plant virus resistance gene.
Shopan J, Mou H, Zhang L, Zhang C, Ma W, Walsh JA, Hu Z, Yang J, Zhang M., Plant J 90(5), 2017
PMID: 28244149
New Insights on Leucine-Rich Repeats Receptor-Like Kinase Orthologous Relationships in Angiosperms.
Dufayard JF, Bettembourg M, Fischer I, Droc G, Guiderdoni E, Périn C, Chantret N, Diévart A., Front Plant Sci 8(), 2017
PMID: 28424707
Transcriptome Analysis of a Female-sterile Mutant (fsm) in Chinese Cabbage (Brassica campestris ssp. pekinensis).
Huang S, Liu Z, Li C, Yao R, Li D, Hou L, Li X, Liu W, Feng H., Front Plant Sci 8(), 2017
PMID: 28443127
Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce.
Reyes-Chin-Wo S, Wang Z, Yang X, Kozik A, Arikit S, Song C, Xia L, Froenicke L, Lavelle DO, Truco MJ, Xia R, Zhu S, Xu C, Xu H, Xu X, Cox K, Korf I, Meyers BC, Michelmore RW., Nat Commun 8(), 2017
PMID: 28401891
A genome-wide SNP-based genetic map and QTL mapping for agronomic traits in Chinese cabbage.
Huang L, Yang Y, Zhang F, Cao J., Sci Rep 7(), 2017
PMID: 28418033
Investigation of the Genetic Diversity and Quantitative Trait Loci Accounting for Important Agronomic and Seed Quality Traits in Brassica carinata.
Zhang W, Hu D, Raman R, Guo S, Wei Z, Shen X, Meng J, Raman H, Zou J., Front Plant Sci 8(), 2017
PMID: 28484482
Single-Copy Genes as Molecular Markers for Phylogenomic Studies in Seed Plants.
Li Z, De La Torre AR, Sterck L, Cánovas FM, Avila C, Merino I, Cabezas JA, Cervera MT, Ingvarsson PK, Van de Peer Y., Genome Biol Evol 9(5), 2017
PMID: 28460034
Whole-Genome Identification and Expression Pattern of the Vicinal Oxygen Chelate Family in Rapeseed (Brassica napus L.).
Liang Y, Wan N, Cheng Z, Mo Y, Liu B, Liu H, Raboanatahiry N, Yin Y, Li M., Front Plant Sci 8(), 2017
PMID: 28536594
Amplifying recombination genome-wide and reshaping crossover landscapes in Brassicas.
Pelé A, Falque M, Trotoux G, Eber F, Nègre S, Gilet M, Huteau V, Lodé M, Jousseaume T, Dechaumet S, Morice J, Poncet C, Coriton O, Martin OC, Rousseau-Gueutin M, Chèvre AM., PLoS Genet 13(5), 2017
PMID: 28493942
Drought-Tolerant Brassica rapa Shows Rapid Expression of Gene Networks for General Stress Responses and Programmed Cell Death Under Simulated Drought Stress.
Guo YM, Samans B, Chen S, Kibret KB, Hatzig S, Turner NC, Nelson MN, Cowling WA, Snowdon RJ., Plant Mol Biol Report 35(4), 2017
PMID: 28751801
Integrated analysis of leaf morphological and color traits in different populations of Chinese cabbage (Brassica rapa ssp. pekinensis).
Choi SR, Yu X, Dhandapani V, Li X, Wang Z, Lee SY, Oh SH, Pang W, Ramchiary N, Hong CP, Park S, Piao Z, Kim H, Lim YP., Theor Appl Genet 130(8), 2017
PMID: 28577084
Assembly and comparison of two closely related Brassica napus genomes.
Bayer PE, Hurgobin B, Golicz AA, Chan CK, Yuan Y, Yuan Y, Lee H, Renton M, Meng J, Li R, Long Y, Zou J, Bancroft I, Chalhoub B, King GJ, Batley J, Edwards D., Plant Biotechnol J 15(12), 2017
PMID: 28403535
A multiplex PCR for rapid identification of Brassica species in the triangle of U.
Koh JCO, Barbulescu DM, Norton S, Redden B, Salisbury PA, Kaur S, Cogan N, Slater AT., Plant Methods 13(), 2017
PMID: 28638437
Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
Castro PH, Lilay GH, Muñoz-Mérida A, Schjoerring JK, Azevedo H, Assunção AGL., Sci Rep 7(1), 2017
PMID: 28630437
RapaNet: A Web Tool for the Co-Expression Analysis of Brassica rapa Genes.
Kim J, Jun KM, Kim JS, Chae S, Pahk YM, Lee TH, Sohn SI, Lee SI, Lim MH, Kim CK, Hur Y, Nahm BH, Kim YK., Evol Bioinform Online 13(), 2017
PMID: 28680265
Genome-wide analysis of UDP-glycosyltransferase super family in Brassica rapa and Brassica oleracea reveals its evolutionary history and functional characterization.
Yu J, Hu F, Dossa K, Wang Z, Ke T., BMC Genomics 18(1), 2017
PMID: 28645261
Duplicated pollen-pistil recognition loci control intraspecific unilateral incompatibility in Brassica rapa.
Takada Y, Murase K, Shimosato-Asano H, Sato T, Nakanishi H, Suwabe K, Shimizu KK, Lim YP, Takayama S, Suzuki G, Watanabe M., Nat Plants 3(), 2017
PMID: 28650458
Divergent Evolutionary Patterns of NAC Transcription Factors Are Associated with Diversification and Gene Duplications in Angiosperm.
Jin X, Ren J, Nevo E, Yin X, Sun D, Peng J., Front Plant Sci 8(), 2017
PMID: 28713414
Genotyping-by-sequencing reveals three QTL for clubroot resistance to six pathotypes of Plasmodiophora brassicae in Brassica rapa.
Yu F, Zhang X, Peng G, Falk KC, Strelkov SE, Gossen BD., Sci Rep 7(1), 2017
PMID: 28674416
Using RNA-Seq for Genomic Scaffold Placement, Correcting Assemblies, and Genetic Map Creation in a Common Brassica rapa Mapping Population.
Markelz RJC, Covington MF, Brock MT, Devisetty UK, Kliebenstein DJ, Weinig C, Maloof JN., G3 (Bethesda) 7(7), 2017
PMID: 28546385
Plant-RRBS, a bisulfite and next-generation sequencing-based methylome profiling method enriching for coverage of cytosine positions.
Schmidt M, Van Bel M, Woloszynska M, Slabbinck B, Martens C, De Block M, Coppens F, Van Lijsebettens M., BMC Plant Biol 17(1), 2017
PMID: 28683715
Genome-Wide Association Study Reveals Candidate Genes for Control of Plant Height, Branch Initiation Height and Branch Number in Rapeseed (Brassica napus L.).
Zheng M, Peng C, Liu H, Tang M, Yang H, Li X, Liu J, Sun X, Wang X, Xu J, Hua W, Wang H., Front Plant Sci 8(), 2017
PMID: 28769955
Genome-wide Analysis and Expression Divergence of the Trihelix family in Brassica Rapa: Insight into the Evolutionary Patterns in Plants.
Wang W, Wu P, Liu T, Ren H, Li Y, Hou X., Sci Rep 7(1), 2017
PMID: 28743951
Papain-like cysteine protease encoding genes in rubber (Hevea brasiliensis): comparative genomics, phylogenetic, and transcriptional profiling analysis.
Zou Z, Xie G, Yang L., Planta 246(5), 2017
PMID: 28752264
Cadmium phytoremediation potential of turnip compared with three common high Cd-accumulating plants.
Li X, Zhang X, Li B, Wu Y, Sun H, Yang Y., Environ Sci Pollut Res Int 24(27), 2017
PMID: 28752309
Enriching Glucoraphanin in Brassica rapa Through Replacement of BrAOP2.2/BrAOP2.3 with Non-functional Genes.
Liu Z, Liang J, Zheng S, Zhang J, Wu J, Cheng F, Yang W, Wang X., Front Plant Sci 8(), 2017
PMID: 28824667
Genome-Wide Identification and Characterization of the Aquaporin Gene Family and Transcriptional Responses to Boron Deficiency in Brassica napus.
Yuan D, Li W, Hua Y, King GJ, Xu F, Shi L., Front Plant Sci 8(), 2017
PMID: 28824672
Characteristics of Color Development in Seeds of Brown- and Yellow-Seeded Heading Chinese Cabbage and Molecular Analysis of Brsc, the Candidate Gene Controlling Seed Coat Color.
Ren Y, He Q, Ma X, Zhang L., Front Plant Sci 8(), 2017
PMID: 28855913
Comparison of transcriptome profiles by Fusarium oxysporum inoculation between Fusarium yellows resistant and susceptible lines in Brassica rapa L.
Miyaji N, Shimizu M, Miyazaki J, Osabe K, Sato M, Ebe Y, Takada S, Kaji M, Dennis ES, Fujimoto R, Okazaki K., Plant Cell Rep 36(12), 2017
PMID: 28819684
Temporal network analysis identifies early physiological and transcriptomic indicators of mild drought in Brassica rapa.
Greenham K, Guadagno CR, Gehan MA, Mockler TC, Weinig C, Ewers BE, McClung CR., Elife 6(), 2017
PMID: 28826479
Development of Brassica oleracea-nigra monosomic alien addition lines: genotypic, cytological and morphological analyses.
Tan C, Cui C, Xiang Y, Ge X, Li Z., Theor Appl Genet 130(12), 2017
PMID: 28884205
Genome-Wide Identification and Characterization of BrrTCP Transcription Factors in Brassica rapa ssp. rapa.
Du J, Hu S, Yu Q, Wang C, Yang Y, Sun H, Yang Y, Sun X., Front Plant Sci 8(), 2017
PMID: 28955373
Understanding of MYB Transcription Factors Involved in Glucosinolate Biosynthesis in Brassicaceae.
Seo MS, Kim JS., Molecules 22(9), 2017
PMID: 28906468
Evolutionary history and functional divergence of the cytochrome P450 gene superfamily between Arabidopsis thaliana and Brassica species uncover effects of whole genome and tandem duplications.
Yu J, Tehrim S, Wang L, Dossa K, Zhang X, Ke T, Liao B., BMC Genomics 18(1), 2017
PMID: 28923019
Expression profiles of BrMYB transcription factors related to glucosinolate biosynthesis and stress response in eight subspecies of Brassica rapa.
Seo MS, Jin M, Sohn SH, Kim JS., FEBS Open Bio 7(11), 2017
PMID: 29123974
Combining Traditional Mutagenesis with New High-Throughput Sequencing and Genome Editing to Reveal Hidden Variation in Polyploid Wheat.
Uauy C, Wulff BBH, Dubcovsky J., Annu Rev Genet 51(), 2017
PMID: 28934591
A genome-wide survey with different rapeseed ecotypes uncovers footprints of domestication and breeding.
Wei D, Cui Y, He Y, Xiong Q, Qian L, Tong C, Lu G, Ding Y, Li J, Jung C, Qian W., J Exp Bot 68(17), 2017
PMID: 28992309
The high-quality genome of Brassica napus cultivar 'ZS11' reveals the introgression history in semi-winter morphotype.
Sun F, Fan G, Hu Q, Zhou Y, Guan M, Tong C, Li J, Du D, Qi C, Jiang L, Liu W, Huang S, Chen W, Yu J, Mei D, Meng J, Zeng P, Shi J, Liu K, Wang X, Wang X, Long Y, Liang X, Hu Z, Huang G, Dong C, Zhang H, Li J, Zhang Y, Li L, Shi C, Wang J, Lee SM, Guan C, Xu X, Liu S, Liu X, Chalhoub B, Hua W, Wang H., Plant J 92(3), 2017
PMID: 28849613
Synteny analysis of genes and distribution of loci controlling oil content and fatty acid profile based on QTL alignment map in Brassica napus.
Raboanatahiry N, Chao H, Guo L, Gan J, Xiang J, Yan M, Zhang L, Yu L, Li M., BMC Genomics 18(1), 2017
PMID: 29025408
Flowering Time Gene Variation in Brassica Species Shows Evolutionary Principles.
Schiessl SV, Huettel B, Kuehn D, Reinhardt R, Snowdon RJ., Front Plant Sci 8(), 2017
PMID: 29089948
Genome-Wide Identification and Expression, Protein-Protein Interaction and Evolutionary Analysis of the Seed Plant-Specific BIG GRAIN and BIG GRAIN LIKE Gene Family.
Mishra BS, Jamsheer K M, Singh D, Sharma M, Laxmi A., Front Plant Sci 8(), 2017
PMID: 29118774
Genome-wide analysis of wheat calcium ATPases and potential role of selected ACAs and ECAs in calcium stress.
Aslam R, Williams LE, Bhatti MF, Virk N., BMC Plant Biol 17(1), 2017
PMID: 29078753
Evolution of the Aux/IAA Gene Family in Hexaploid Wheat.
Qiao L, Zhang L, Zhang X, Zhang L, Li X, Chang J, Zhan H, Guo H, Zheng J, Chang Z., J Mol Evol 85(3-4), 2017
PMID: 29085968
Genome-wide identification and expression analysis of calmodulin-like (CML) genes in Chinese cabbage (Brassica rapa L. ssp. pekinensis).
Nie S, Zhang M, Zhang L., BMC Genomics 18(1), 2017
PMID: 29096605
Current Status and Challenges in Identifying Disease Resistance Genes in Brassica napus.
Neik TX, Barbetti MJ, Batley J., Front Plant Sci 8(), 2017
PMID: 29163558
Transcriptomic analysis of the regulation of stalk development in flowering Chinese cabbage (Brassica campestris) by RNA sequencing.
Huang X, Lei Y, Guan H, Hao Y, Liu H, Sun G, Chen R, Song S., Sci Rep 7(1), 2017
PMID: 29138433
Identification of Candidate Genes for Calcium and Magnesium Accumulation in Brassica napus L. by Association Genetics.
Alcock TD, Havlickova L, He Z, Bancroft I, White PJ, Broadley MR, Graham NS., Front Plant Sci 8(), 2017
PMID: 29187860
Genome-wide analysis of the auxin/indoleacetic acid (Aux/IAA) gene family in allotetraploid rapeseed (Brassica napus L.).
Li H, Wang B, Zhang Q, Wang J, King GJ, Liu K., BMC Plant Biol 17(1), 2017
PMID: 29145811
Insights into the species-specific metabolic engineering of glucosinolates in radish (Raphanus sativus L.) based on comparative genomic analysis.
Wang J, Qiu Y, Wang X, Yue Z, Yang X, Chen X, Zhang X, Shen D, Wang H, Song J, He H, Li X., Sci Rep 7(1), 2017
PMID: 29167500
Patterns and Consequences of Subgenome Differentiation Provide Insights into the Nature of Paleopolyploidy in Plants.
Zhao M, Zhang B, Lisch D, Ma J., Plant Cell 29(12), 2017
PMID: 29180596
Parallel loss of introns in the ABCB1 gene in angiosperms.
Parvathaneni RK, DeLeo VL, Spiekerman JJ, Chakraborty D, Devos KM., BMC Evol Biol 17(1), 2017
PMID: 29202710
Consideration of non-canonical splice sites improves gene prediction on the Arabidopsis thaliana Niederzenz-1 genome sequence.
Pucker B, Holtgräwe D, Weisshaar B., BMC Res Notes 10(1), 2017
PMID: 29202864
Coupling Seq-BSA and RNA-Seq Analyses Reveal the Molecular Pathway and Genes Associated with Heading Type in Chinese Cabbage.
Gu A, Meng C, Chen Y, Wei L, Dong H, Lu Y, Wang Y, Chen X, Zhao J, Shen S., Front Genet 8(), 2017
PMID: 29312432
Mapping and Identifying a Candidate Gene (Bnmfs) for Female-Male Sterility through Whole-Genome Resequencing and RNA-Seq in Rapeseed (Brassica napus L.).
Teng C, Du D, Xiao L, Yu Q, Shang G, Zhao Z., Front Plant Sci 8(), 2017
PMID: 29326731
Genome-wide identification, characterization, and evolutionary analysis of flowering genes in radish (Raphanus sativus L.).
Wang J, Qiu Y, Cheng F, Chen X, Zhang X, Wang H, Song J, Duan M, Yang H, Li X., BMC Genomics 18(1), 2017
PMID: 29258434
Genome-Wide Identification, Evolutionary and Expression Analyses of the GALACTINOL SYNTHASE Gene Family in Rapeseed and Tobacco.
Fan Y, Yu M, Liu M, Zhang R, Sun W, Qian M, Duan H, Chang W, Ma J, Qu C, Zhang K, Lei B, Lu K., Int J Mol Sci 18(12), 2017
PMID: 29261107
Elucidating the major hidden genomic components of the A, C, and AC genomes and their influence on Brassica evolution.
Perumal S, Waminal NE, Lee J, Lee J, Choi BS, Kim HH, Grandbastien MA, Yang TJ., Sci Rep 7(1), 2017
PMID: 29269833
BnDGAT1s Function Similarly in Oil Deposition and Are Expressed with Uniform Patterns in Tissues of Brassica napus.
Zhao C, Li H, Zhang W, Wang H, Xu A, Tian J, Zou J, Taylor DC, Zhang M., Front Plant Sci 8(), 2017
PMID: 29312429
Divergent evolutionary patterns of the MAPK cascade genes in Brassica rapa and plant phylogenetics.
Wu P, Wang W, Li Y, Hou X., Hortic Res 4(), 2017
PMID: 29285397
misMM: An Integrated Pipeline for Misassembly Detection Using Genotyping-by-Sequencing and Its Validation with BAC End Library Sequences and Gene Synteny.
Ko YJ, Kim JS, Kim S., Genomics Inform 15(4), 2017
PMID: 29307138
Linkage mapping with paralogs exposes regions of residual tetrasomic inheritance in chum salmon (Oncorhynchus keta).
Waples RK, Seeb LW, Seeb JE., Mol Ecol Resour 16(1), 2016
PMID: 25712438
High-throughput multiplex cpDNA resequencing clarifies the genetic diversity and genetic relationships among Brassica napus, Brassica rapa and Brassica oleracea.
Qiao J, Cai M, Yan G, Wang N, Li F, Chen B, Gao G, Xu K, Li J, Wu X., Plant Biotechnol J 14(1), 2016
PMID: 26031705
Evolution and conservation of JmjC domain proteins in the green lineage.
Huang Y, Chen D, Liu C, Shen W, Ruan Y., Mol Genet Genomics 291(1), 2016
PMID: 26152513
Uncovering the dynamic evolution of nucleotide-binding site-leucine-rich repeat (NBS-LRR) genes in Brassicaceae.
Zhang YM, Shao ZQ, Wang Q, Hang YY, Xue JY, Wang B, Chen JQ., J Integr Plant Biol 58(2), 2016
PMID: 25926337
Tuning growth cycles of Brassica crops via natural antisense transcripts of BrFLC.
Li X, Zhang S, Bai J, He Y., Plant Biotechnol J 14(3), 2016
PMID: 26250982
SHORT HYPOCOTYL UNDER BLUE1 or HAIKU2 mixepression alters canola and Arabidopsis seed development.
Xiao YG, Sun QB, Kang XJ, Chen CB, Ni M., New Phytol 209(2), 2016
PMID: 26389843
GDSL esterase/lipase genes in Brassica rapa L.: genome-wide identification and expression analysis.
Dong X, Yi H, Han CT, Nou IS, Hur Y., Mol Genet Genomics 291(2), 2016
PMID: 26423069
Map-based cloning reveals the complex organization of the BnRf locus and leads to the identification of BnRf(b), a male sterility gene, in Brassica napus.
Deng Z, Li X, Wang Z, Jiang Y, Wan L, Dong F, Chen F, Hong D, Yang G., Theor Appl Genet 129(1), 2016
PMID: 26433826
Comparative genomic de-convolution of the cotton genome revealed a decaploid ancestor and widespread chromosomal fractionation.
Wang X, Guo H, Wang J, Lei T, Liu T, Wang Z, Li Y, Lee TH, Li J, Tang H, Jin D, Paterson AH., New Phytol 209(3), 2016
PMID: 26756535
A Systems Genetics Approach Identifies Gene Regulatory Networks Associated with Fatty Acid Composition in Brassica rapa Seed.
Basnet RK, Del Carpio DP, Xiao D, Bucher J, Jin M, Boyle K, Fobert P, Visser RG, Maliepaard C, Bonnema G., Plant Physiol 170(1), 2016
PMID: 26518343
Genetic variation and inheritance of phytosterol and oil content in a doubled haploid population derived from the winter oilseed rape Sansibar × Oase cross.
Teh L, Möllers C., Theor Appl Genet 129(1), 2016
PMID: 26518571
Identification of environmentally stable QTL for resistance against Leptosphaeria maculans in oilseed rape (Brassica napus).
Huang YJ, Jestin C, Welham SJ, King GJ, Manzanares-Dauleux MJ, Fitt BD, Delourme R., Theor Appl Genet 129(1), 2016
PMID: 26518572
Cytokinin: a key driver of seed yield.
Jameson PE, Song J., J Exp Bot 67(3), 2016
PMID: 26525061
Genome-wide analysis and expression patterns of ZF-HD transcription factors under different developmental tissues and abiotic stresses in Chinese cabbage.
Wang W, Wu P, Li Y, Hou X., Mol Genet Genomics 291(3), 2016
PMID: 26546019
SNP diversity within and among Brassica rapa accessions reveals no geographic differentiation.
Tanhuanpää P, Erkkilä M, Tenhola-Roininen T, Tanskanen J, Manninen O., Genome 59(1), 2016
PMID: 26694015
Genotyping-by-sequencing map permits identification of clubroot resistance QTLs and revision of the reference genome assembly in cabbage (Brassica oleracea L.).
Lee J, Izzah NK, Choi BS, Joh HJ, Lee SC, Perumal S, Seo J, Ahn K, Jo EJ, Choi GJ, Nou IS, Yu Y, Yang TJ., DNA Res 23(1), 2016
PMID: 26622061
Evolution and protein interactions of AP2 proteins in Brassicaceae: Evidence linking development and environmental responses.
Zeng L, Yin Y, You C, Pan Q, Xu D, Jin T, Zhang B, Ma H., J Integr Plant Biol 58(6), 2016
PMID: 26472270
A new method for generation and screening of Chinese cabbage mutants using isolated microspore culturing and EMS mutagenesis
Huang S, Liu Z, Li D, Yao R, Feng H., Euphytica 207(1), 2016
PMID: IND604685820
Brassica juncea Lines with Substituted Chimeric GFP-CENH3 Give Haploid and Aneuploid Progenies on Crossing with Other Lines.
Watts A, Singh SK, Bhadouria J, Naresh V, Bishoyi AK, Geetha KA, Chamola R, Pattanayak D, Bhat SR., Front Plant Sci 7(), 2016
PMID: 28111587
The evolutionary landscape of PRC1 core components in green lineage.
Chen DH, Huang Y, Ruan Y, Shen WH., Planta 243(4), 2016
PMID: 26729480
Co-linearity and divergence of the A subgenome of Brassica juncea compared with other Brassica species carrying different A subgenomes.
Zou J, Hu D, Liu P, Raman H, Liu Z, Liu X, Parkin IA, Chalhoub B, Meng J., BMC Genomics 17(), 2016
PMID: 26728943
Evaluation of Linkage Disequilibrium Pattern and Association Study on Seed Oil Content in Brassica napus Using ddRAD Sequencing.
Wu Z, Wang B, Chen X, Wu J, King GJ, Xiao Y, Liu K., PLoS One 11(1), 2016
PMID: 26730738
Hairy Canola (Brasssica napus) re-visited: Down-regulating TTG1 in an AtGL3-enhanced hairy leaf background improves growth, leaf trichome coverage, and metabolite gene expression diversity.
Alahakoon UI, Taheri A, Nayidu NK, Epp D, Yu M, Parkin I, Hegedus D, Bonham-Smith P, Gruber MY., BMC Plant Biol 16(), 2016
PMID: 26739276
Evolutionary Dynamics of the Leucine-Rich Repeat Receptor-Like Kinase (LRR-RLK) Subfamily in Angiosperms.
Fischer I, Diévart A, Droc G, Dufayard JF, Chantret N., Plant Physiol 170(3), 2016
PMID: 26773008
Landscape and evolutionary dynamics of terminal repeat retrotransposons in miniature in plant genomes.
Gao D, Li Y, Kim KD, Abernathy B, Jackson SA., Genome Biol 17(), 2016
PMID: 26781660
Identification, duplication, evolution and expression analyses of caleosins in Brassica plants and Arabidopsis subspecies.
Shen Y, Liu M, Wang L, Li Z, Taylor DC, Li Z, Zhang M., Mol Genet Genomics 291(2), 2016
PMID: 26786939
Physiological Characterization and Comparative Transcriptome Analysis of a Slow-Growing Reduced-Thylakoid Mutant of Chinese Cabbage (Brassica campestris ssp. pekinensis).
Huang S, Liu Z, Li D, Yao R, Hou L, Li X, Feng H., Front Plant Sci 7(), 2016
PMID: 26858733
Class-Specific Evolution and Transcriptional Differentiation of 14-3-3 Family Members in Mesohexaploid Brassica rapa.
Chandna R, Augustine R, Kanchupati P, Kumar R, Kumar P, Arya GC, Bisht NC., Front Plant Sci 7(), 2016
PMID: 26858736
Functional analysis of three BrMYB28 transcription factors controlling the biosynthesis of glucosinolates in Brassica rapa.
Seo MS, Jin M, Chun JH, Kim SJ, Park BS, Shon SH, Kim JS., Plant Mol Biol 90(4-5), 2016
PMID: 26820138
LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
Ranftl QL, Bastakis E, Klermund C, Schwechheimer C., Plant Physiol 170(4), 2016
PMID: 26829982
NABIC: A New Access Portal to Search, Visualize, and Share Agricultural Genomics Data.
Seol YJ, Lee TH, Park DS, Kim CK., Evol Bioinform Online 12(), 2016
PMID: 26848255
Sequencing Crop Genomes: A Gateway to Improve Tropical Agriculture.
Thottathil GP, Jayasekaran K, Othman AS., Trop Life Sci Res 27(1), 2016
PMID: 27019684
Genome-wide identification, classification, and analysis of NADP-ME family members from 12 crucifer species.
Tao P, Guo W, Li B, Wang W, Yue Z, Lei J, Zhao Y, Zhong X., Mol Genet Genomics 291(3), 2016
PMID: 26839002
Characterizing Variation of Branch Angle and Genome-Wide Association Mapping in Rapeseed (Brassica napus L.).
Liu J, Wang W, Mei D, Wang H, Fu L, Liu D, Li Y, Hu Q., Front Plant Sci 7(), 2016
PMID: 26870051
Transcriptome Profiling of Resistance to Fusarium oxysporum f. sp. conglutinans in Cabbage (Brassica oleracea) Roots.
Xing M, Lv H, Ma J, Xu D, Li H, Yang L, Kang J, Wang X, Fang Z., PLoS One 11(2), 2016
PMID: 26849436
Genetic Variation and Divergence of Genes Involved in Leaf Adaxial-Abaxial Polarity Establishment in Brassica rapa.
Liang J, Liu B, Wu J, Cheng F, Wang X., Front Plant Sci 7(), 2016
PMID: 26904064
Creating Order from Chaos: Epigenome Dynamics in Plants with Complex Genomes.
Springer NM, Lisch D, Li Q., Plant Cell 28(2), 2016
PMID: 26869701
Epigenetic regulation of subgenome dominance following whole genome triplication in Brassica rapa.
Cheng F, Sun C, Wu J, Schnable J, Woodhouse MR, Liang J, Cai C, Freeling M, Wang X., New Phytol 211(1), 2016
PMID: 26871271
Genome-wide association analyses reveal complex genetic architecture underlying natural variation for flowering time in canola.
Raman H, Raman R, Coombes N, Song J, Prangnell R, Bandaranayake C, Tahira R, Sundaramoorthi V, Killian A, Meng J, Dennis ES, Balasubramanian S., Plant Cell Environ 39(6), 2016
PMID: 26428711
Genetic dissection of plant architecture and yield-related traits in Brassica napus.
Cai G, Yang Q, Chen H, Yang Q, Zhang C, Fan C, Zhou Y., Sci Rep 6(), 2016
PMID: 26880301
Molecular and systems approaches towards drought-tolerant canola crops.
Zhu M, Monroe JG, Suhail Y, Villiers F, Mullen J, Pater D, Hauser F, Jeon BW, Bader JS, Kwak JM, Schroeder JI, McKay JK, Assmann SM., New Phytol 210(4), 2016
PMID: 26879345
Genome-wide identification and homeolog-specific expression analysis of the SnRK2 genes in Brassica napus guard cells.
Yoo MJ, Ma T, Zhu N, Liu L, Harmon AC, Wang Q, Chen S., Plant Mol Biol 91(1-2), 2016
PMID: 26898295
Molecular-cytogenetic characterization of C-genome chromosome substitution lines in Brassica juncea (L.) Czern and Coss.
Gupta M, Mason AS, Batley J, Bharti S, Banga S, Banga SS., Theor Appl Genet 129(6), 2016
PMID: 26913722
Evolution of plant genome architecture.
Wendel JF, Jackson SA, Meyers BC, Wing RA., Genome Biol 17(), 2016
PMID: 26926526
Genomic legacies of the progenitors and the evolutionary consequences of allopolyploidy.
Steige KA, Slotte T., Curr Opin Plant Biol 30(), 2016
PMID: 26943938
Development of IP and SCAR markers linked to the yellow seed color gene in Brassica juncea L.
Huang Z, Liu L, Lu H, Lang L, Zhao N, Ding J, Xu A., Breed Sci 66(2), 2016
PMID: 27162489
Tolerant and Susceptible Sesame Genotypes Reveal Waterlogging Stress Response Patterns.
Wang L, Li D, Zhang Y, Gao Y, Yu J, Wei X, Zhang X., PLoS One 11(3), 2016
PMID: 26934874
Comparative paleogenomics of crucifers: ancestral genomic blocks revisited.
Lysak MA, Mandáková T, Schranz ME., Curr Opin Plant Biol 30(), 2016
PMID: 26945766
Concentrations of thiocyanate and goitrin in human plasma, their precursor concentrations in brassica vegetables, and associated potential risk for hypothyroidism.
Felker P, Bunch R, Leung AM., Nutr Rev 74(4), 2016
PMID: 26946249
Ancestors of modern plant crops.
Salse J., Curr Opin Plant Biol 30(), 2016
PMID: 26985732
Biogeography and diversification of Brassicales: A 103million year tale.
Cardinal-McTeague WM, Sytsma KJ, Hall JC., Mol Phylogenet Evol 99(), 2016
PMID: 26993763
Comparative Leaves Transcriptome Analysis Emphasizing on Accumulation of Anthocyanins in Brassica: Molecular Regulation and Potential Interaction with Photosynthesis.
Mushtaq MA, Pan Q, Chen D, Zhang Q, Ge X, Li Z., Front Plant Sci 7(), 2016
PMID: 27047501
Quantitative trait loci analysis and genome-wide comparison for silique related traits in Brassica napus.
Wang X, Chen L, Wang A, Wang H, Tian J, Zhao X, Chao H, Zhao Y, Zhao W, Xiang J, Gan J, Li M., BMC Plant Biol 16(), 2016
PMID: 27000872
The compact genome of the plant pathogen Plasmodiophora brassicae is adapted to intracellular interactions with host Brassica spp.
Rolfe SA, Strelkov SE, Links MG, Clarke WE, Robinson SJ, Djavaheri M, Malinowski R, Haddadi P, Kagale S, Parkin IA, Taheri A, Borhan MH., BMC Genomics 17(), 2016
PMID: 27036196
Agronomic and Seed Quality Traits Dissected by Genome-Wide Association Mapping in Brassica napus.
Körber N, Bus A, Li J, Parkin IA, Wittkop B, Snowdon RJ, Stich B., Front Plant Sci 7(), 2016
PMID: 27066036
Elucidating the triplicated ancestral genome structure of radish based on chromosome-level comparison with the Brassica genomes.
Jeong YM, Kim N, Ahn BO, Oh M, Chung WH, Chung H, Jeong S, Lim KB, Hwang YJ, Kim GB, Baek S, Choi SB, Hyung DJ, Lee SW, Sohn SH, Kwon SJ, Jin M, Seol YJ, Chae WB, Choi KJ, Park BS, Yu HJ, Mun JH., Theor Appl Genet 129(7), 2016
PMID: 27038817
Genome-Wide Analysis and Characterization of Aux/IAA Family Genes in Brassica rapa.
Paul P, Dhandapani V, Rameneni JJ, Li X, Sivanandhan G, Choi SR, Pang W, Im S, Lim YP., PLoS One 11(4), 2016
PMID: 27049520
Evaluating and Characterizing Ancient Whole-Genome Duplications in Plants with Gene Count Data.
Tiley GP, Ané C, Burleigh JG., Genome Biol Evol 8(4), 2016
PMID: 26988251
Genome-wide identification, structural analysis and new insights into late embryogenesis abundant (LEA) gene family formation pattern in Brassica napus.
Liang Y, Xiong Z, Zheng J, Xu D, Zhu Z, Xiang J, Gan J, Raboanatahiry N, Yin Y, Li M., Sci Rep 6(), 2016
PMID: 27072743
Rapid genome-wide evolution in Brassica rapa populations following drought revealed by sequencing of ancestral and descendant gene pools.
Franks SJ, Kane NC, O'Hara NB, Tittes S, Rest JS., Mol Ecol 25(15), 2016
PMID: 27072809
Identification of Genome-Wide Variants and Discovery of Variants Associated with Brassica rapa Clubroot Resistance Gene Rcr1 through Bulked Segregant RNA Sequencing.
Yu F, Zhang X, Huang Z, Chu M, Song T, Falk KC, Deora A, Chen Q, Zhang Y, McGregor L, Gossen BD, McDonald MR, Peng G., PLoS One 11(4), 2016
PMID: 27078023
How diploidization turned a tetraploid into a pseudotriploid.
Mandáková T, Gloss AD, Whiteman NK, Lysak MA., Am J Bot 103(7), 2016
PMID: 27206460
Temperature expression patterns of genes and their coexpression with LncRNAs revealed by RNA-Seq in non-heading Chinese cabbage.
Song X, Liu G, Huang Z, Duan W, Tan H, Li Y, Hou X., BMC Genomics 17(), 2016
PMID: 27103267
Small RNA changes in synthetic Brassica napus.
Fu Y, Xiao M, Yu H, Mason AS, Yin J, Li J, Zhang D, Fu D., Planta 244(3), 2016
PMID: 27107747
Comprehensive analysis of the polygalacturonase and pectin methylesterase genes in Brassica rapa shed light on their different evolutionary patterns.
Duan W, Huang Z, Song X, Liu T, Liu H, Hou X, Li Y., Sci Rep 6(), 2016
PMID: 27112365
Fine mapping of a major locus controlling plant height using a high-density single-nucleotide polymorphism map in Brassica napus.
Wang Y, He J, Yang L, Wang Y, Chen W, Wan S, Chu P, Guan R., Theor Appl Genet 129(8), 2016
PMID: 27147069
Oilseed rape: learning about ancient and recent polyploid evolution from a recent crop species.
Mason AS, Snowdon RJ., Plant Biol (Stuttg) 18(6), 2016
PMID: 27063780
Genome-Wide Identification and Characterization of bZIP Transcription Factors in Brassica oleracea under Cold Stress.
Hwang I, Manoharan RK, Kang JG, Chung MY, Kim YW, Nou IS., Biomed Res Int 2016(), 2016
PMID: 27314020
Lack of GLYCOLATE OXIDASE1, but Not GLYCOLATE OXIDASE2, Attenuates the Photorespiratory Phenotype of CATALASE2-Deficient Arabidopsis.
Kerchev P, Waszczak C, Lewandowska A, Willems P, Shapiguzov A, Li Z, Alseekh S, Mühlenbock P, Hoeberichts FA, Huang J, Van Der Kelen K, Kangasjärvi J, Fernie AR, De Smet R, Van de Peer Y, Messens J, Van Breusegem F., Plant Physiol 171(3), 2016
PMID: 27225899
Conservation and Expression Patterns Divergence of Ascorbic Acid d-mannose/l-galactose Pathway Genes in Brassica rapa.
Duan W, Ren J, Li Y, Liu T, Song X, Chen Z, Huang Z, Hou X, Li Y., Front Plant Sci 7(), 2016
PMID: 27313597
A Collection of Conserved Noncoding Sequences to Study Gene Regulation in Flowering Plants.
Van de Velde J, Van Bel M, Vaneechoutte D, Vandepoele K., Plant Physiol 171(4), 2016
PMID: 27261064
Reduction of GIGANTEA expression in transgenic Brassica rapa enhances salt tolerance.
Kim JA, Jung HE, Hong JK, Hermand V, Robertson McClung C, Lee YH, Kim JY, Lee SI, Jeong MJ, Kim J, Yun D, Kim W., Plant Cell Rep 35(9), 2016
PMID: 27295265
Most Compositae (Asteraceae) are descendants of a paleohexaploid and all share a paleotetraploid ancestor with the Calyceraceae.
Barker MS, Li Z, Kidder TI, Reardon CR, Lai Z, Oliveira LO, Scascitelli M, Rieseberg LH., Am J Bot 103(7), 2016
PMID: 27313199
High-throughput development of simple sequence repeat markers for genetic diversity research in Crambe abyssinica.
Qi W, Lin F, Liu Y, Huang B, Cheng J, Zhang W, Zhao H., BMC Plant Biol 16(1), 2016
PMID: 27317011
Identification of a novel MLPK homologous gene MLPKn1 and its expression analysis in Brassica oleracea.
Gao Q, Shi S, Liu Y, Pu Q, Liu X, Zhang Y, Zhu L., Plant Reprod 29(3), 2016
PMID: 27342989
Comparative Transcriptome Analysis Reveals Heat-Responsive Genes in Chinese Cabbage (Brassica rapa ssp. chinensis).
Wang A, Hu J, Huang X, Li X, Zhou G, Yan Z., Front Plant Sci 7(), 2016
PMID: 27443222
A Genome-Wide Analysis Reveals Stress and Hormone Responsive Patterns of TIFY Family Genes in Brassica rapa.
Saha G, Park JI, Kayum MA, Nou IS., Front Plant Sci 7(), 2016
PMID: 27446164
A high-density SNP genotyping array for Brassica napus and its ancestral diploid species based on optimised selection of single-locus markers in the allotetraploid genome.
Clarke WE, Higgins EE, Plieske J, Wieseke R, Sidebottom C, Khedikar Y, Batley J, Edwards D, Meng J, Li R, Lawley CT, Pauquet J, Laga B, Cheung W, Iniguez-Luy F, Dyrszka E, Rae S, Stich B, Snowdon RJ, Sharpe AG, Ganal MW, Parkin IA., Theor Appl Genet 129(10), 2016
PMID: 27364915
The epidermis coordinates auxin-induced stem growth in response to shade.
Procko C, Burko Y, Jaillais Y, Ljung K, Long JA, Chory J., Genes Dev 30(13), 2016
PMID: 27401556
Spreading Winge and flying high: The evolutionary importance of polyploidy after a century of study.
Barker MS, Husband BC, Pires JC., Am J Bot 103(7), 2016
PMID: 27480249
Genome Wide Identification and Functional Prediction of Long Non-Coding RNAs Responsive to Sclerotinia sclerotiorum Infection in Brassica napus.
Joshi RK, Megha S, Basu U, Rahman MH, Kav NN., PLoS One 11(7), 2016
PMID: 27388760
Genome-Wide Analysis of the bZIP Gene Family Identifies Two ABI5-Like bZIP Transcription Factors, BrABI5a and BrABI5b, as Positive Modulators of ABA Signalling in Chinese Cabbage.
Bai Y, Zhu W, Hu X, Sun C, Li Y, Wang D, Wang Q, Pei G, Zhang Y, Guo A, Zhao H, Lu H, Mu X, Hu J, Zhou X, Xie CG., PLoS One 11(7), 2016
PMID: 27414644
Expression-level support for gene dosage sensitivity in three Glycine subgenus Glycine polyploids and their diploid progenitors.
Coate JE, Song MJ, Bombarely A, Doyle JJ., New Phytol 212(4), 2016
PMID: 27418296
Identification of loci associated with embryo yield in microspore culture of Brassica rapa by segregation distortion analysis.
Kitashiba H, Taguchi K, Kaneko I, Inaba K, Yokoi S, Takahata Y, Nishio T., Plant Cell Rep 35(10), 2016
PMID: 27438134
Multigenic Control of Pod Shattering Resistance in Chinese Rapeseed Germplasm Revealed by Genome-Wide Association and Linkage Analyses.
Liu J, Wang J, Wang H, Wang W, Zhou R, Mei D, Cheng H, Yang J, Raman H, Hu Q., Front Plant Sci 7(), 2016
PMID: 27493651
Cytogenetic Diversity of Simple Sequences Repeats in Morphotypes of Brassica rapa ssp. chinensis.
Zheng JS, Sun CZ, Zhang SN, Hou XL, Bonnema G., Front Plant Sci 7(), 2016
PMID: 27507974
Fine mapping of a dominant gene conferring chlorophyll-deficiency in Brassica napus.
Wang Y, He Y, Yang M, He J, Xu P, Shao M, Chu P, Guan R., Sci Rep 6(), 2016
PMID: 27506952
Origination, Expansion, Evolutionary Trajectory, and Expression Bias of AP2/ERF Superfamily in Brassica napus.
Song X, Wang J, Ma X, Li Y, Lei T, Wang L, Ge W, Guo D, Wang Z, Li C, Zhao J, Wang X., Front Plant Sci 7(), 2016
PMID: 27570529
Subgenome parallel selection is associated with morphotype diversification and convergent crop domestication in Brassica rapa and Brassica oleracea.
Cheng F, Sun R, Hou X, Zheng H, Zhang F, Zhang Y, Liu B, Liang J, Zhuang M, Liu Y, Liu D, Wang X, Li P, Liu Y, Lin K, Bucher J, Zhang N, Wang Y, Wang H, Deng J, Liao Y, Wei K, Zhang X, Fu L, Hu Y, Liu J, Cai C, Zhang S, Zhang S, Li F, Zhang H, Zhang J, Guo N, Liu Z, Liu J, Sun C, Ma Y, Zhang H, Cui Y, Freeling MR, Borm T, Bonnema G, Wu J, Wang X., Nat Genet 48(10), 2016
PMID: 27526322
The Gene Encoding Dihydroflavonol 4-Reductase Is a Candidate for the anthocyaninless Locus of Rapid Cycling Brassica rapa (Fast Plants Type).
Wendell DL, Vaziri A, Shergill G., PLoS One 11(8), 2016
PMID: 27548675
Altered Transcription and Neofunctionalization of Duplicated Genes Rescue the Harmful Effects of a Chimeric Gene in Brassica napus.
Xia S, Wang Z, Zhang H, Hu K, Zhang Z, Qin M, Dun X, Yi B, Wen J, Ma C, Shen J, Fu T, Tu J., Plant Cell 28(9), 2016
PMID: 27559024
The genome sequence of allopolyploid Brassica juncea and analysis of differential homoeolog gene expression influencing selection.
Yang J, Liu D, Wang X, Ji C, Cheng F, Liu B, Hu Z, Chen S, Pental D, Ju Y, Yao P, Li X, Xie K, Zhang J, Wang J, Liu F, Ma W, Shopan J, Zheng H, Mackenzie SA, Zhang M., Nat Genet 48(10), 2016
PMID: 27595476
Extraction of the Constituent Subgenomes of the Natural Allopolyploid Rapeseed (Brassica napus L.).
Zhu B, Tu Y, Zeng P, Ge X, Li Z., Genetics 204(3), 2016
PMID: 27638420
Genome-Wide Characterization of the MADS-Box Gene Family in Radish (Raphanus sativus L.) and Assessment of Its Roles in Flowering and Floral Organogenesis.
Li C, Wang Y, Xu L, Nie S, Chen Y, Liang D, Sun X, Karanja BK, Luo X, Liu L., Front Plant Sci 7(), 2016
PMID: 27703461
Genome-Wide Gene/Genome Dosage Imbalance Regulates Gene Expressions in Synthetic Brassica napus and Derivatives (AC, AAC, CCA, CCAA).
Tan C, Pan Q, Cui C, Xiang Y, Ge X, Li Z., Front Plant Sci 7(), 2016
PMID: 27721820
Genome-Wide Analysis and Expression Profiling of the SUC and SWEET Gene Families of Sucrose Transporters in Oilseed Rape (Brassica napus L.).
Jian H, Lu K, Yang B, Wang T, Zhang L, Zhang A, Wang J, Liu L, Qu C, Li J., Front Plant Sci 7(), 2016
PMID: 27733861
A Genome-Wide Association Study Reveals New Loci for Resistance to Clubroot Disease in Brassica napus.
Li L, Luo Y, Chen B, Xu K, Zhang F, Li H, Huang Q, Xiao X, Zhang T, Hu J, Li F, Wu X., Front Plant Sci 7(), 2016
PMID: 27746804
Genome-wide Association Study Identifies New Loci for Resistance to Leptosphaeria maculans in Canola.
Raman H, Raman R, Coombes N, Song J, Diffey S, Kilian A, Lindbeck K, Barbulescu DM, Batley J, Edwards D, Salisbury PA, Marcroft S., Front Plant Sci 7(), 2016
PMID: 27822217
Comparative genomic analysis of the compound Brassica napus Rf locus.
Gaborieau L, Brown GG., BMC Genomics 17(1), 2016
PMID: 27782804
The Cardamine hirsuta genome offers insight into the evolution of morphological diversity.
Gan X, Hay A, Kwantes M, Haberer G, Hallab A, Ioio RD, Hofhuis H, Pieper B, Cartolano M, Neumann U, Nikolov LA, Song B, Hajheidari M, Briskine R, Kougioumoutzi E, Vlad D, Broholm S, Hein J, Meksem K, Lightfoot D, Shimizu KK, Shimizu-Inatsugi R, Imprialou M, Kudrna D, Wing R, Sato S, Huijser P, Filatov D, Mayer KF, Mott R, Tsiantis M., Nat Plants 2(11), 2016
PMID: 27797353
The pangenome of an agronomically important crop plant Brassica oleracea.
Golicz AA, Bayer PE, Barker GC, Edger PP, Kim H, Martinez PA, Chan CK, Severn-Ellis A, McCombie WR, Parkin IA, Paterson AH, Pires JC, Sharpe AG, Tang H, Teakle GR, Town CD, Batley J, Edwards D., Nat Commun 7(), 2016
PMID: 27834372
Transcriptome-Wide Identification and Expression Analysis of the NAC Gene Family in Tea Plant [Camellia sinensis (L.) O. Kuntze].
Wang YX, Liu ZW, Wu ZJ, Li H, Zhuang J., PLoS One 11(11), 2016
PMID: 27855193
Introgressing Subgenome Components from Brassica rapa and B. carinata to B. juncea for Broadening Its Genetic Base and Exploring Intersubgenomic Heterosis.
Wei Z, Wang M, Chang S, Wu C, Liu P, Meng J, Zou J., Front Plant Sci 7(), 2016
PMID: 27909440
Fire and Brimstone: Molecular Interactions between Sulfur and Glucosinolate Biosynthesis in Model and Crop Brassicaceae.
Borpatragohain P, Rose TJ, King GJ., Front Plant Sci 7(), 2016
PMID: 27917185
Single R Gene Introgression Lines for Accurate Dissection of the Brassica - Leptosphaeria Pathosystem.
Larkan NJ, Yu F, Lydiate DJ, Rimmer SR, Borhan MH., Front Plant Sci 7(), 2016
PMID: 27965684
Microspore Induced Doubled Haploids Production from Ethyl Methanesulfonate (EMS) Soaked Flower Buds Is an Efficient Strategy for Mutagenesis in Chinese Cabbage.
Lu Y, Dai S, Gu A, Liu M, Wang Y, Luo S, Zhao Y, Wang S, Xuan S, Chen X, Li X, Bonnema G, Zhao J, Shen S., Front Plant Sci 7(), 2016
PMID: 28018368
Global DNA methylation variations after short-term heat shock treatment in cultured microspores of Brassica napus cv. Topas.
Li J, Huang Q, Sun M, Zhang T, Li H, Chen B, Xu K, Gao G, Li F, Yan G, Qiao J, Cai Y, Wu X., Sci Rep 6(), 2016
PMID: 27917903
Genome-Wide Survey of Flavonoid Biosynthesis Genes and Gene Expression Analysis between Black- and Yellow-Seeded Brassica napus.
Qu C, Zhao H, Fu F, Wang Z, Zhang K, Zhou Y, Wang X, Wang R, Xu X, Tang Z, Lu K, Li JN., Front Plant Sci 7(), 2016
PMID: 27999578
Genome-Wide Identification, Localization, and Expression Analysis of Proanthocyanidin-Associated Genes in Brassica.
Liu X, Lu Y, Yan M, Sun D, Hu X, Liu S, Chen S, Guan C, Liu Z., Front Plant Sci 7(), 2016
PMID: 28018375
Plastoquinone and Ubiquinone in Plants: Biosynthesis, Physiological Function and Metabolic Engineering.
Liu M, Lu S., Front Plant Sci 7(), 2016
PMID: 28018418
Genome resequencing and comparative variome analysis in a Brassica rapa and Brassica oleracea collection.
Cheng F, Wu J, Cai C, Fu L, Liang J, Borm T, Zhuang M, Zhang Y, Zhang F, Bonnema G, Wang X., Sci Data 3(), 2016
PMID: 27996963
Identification and expression analysis of WRKY family genes under biotic and abiotic stresses in Brassica rapa.
Kayum MA, Jung HJ, Park JI, Ahmed NU, Saha G, Yang TJ, Nou IS., Mol Genet Genomics 290(1), 2015
PMID: 25149146
Genome-wide analysis of the MADS-box gene family in Brassica rapa (Chinese cabbage).
Duan W, Song X, Liu T, Huang Z, Ren J, Hou X, Li Y., Mol Genet Genomics 290(1), 2015
PMID: 25216934
PLAZA 3.0: an access point for plant comparative genomics.
Proost S, Van Bel M, Vaneechoutte D, Van de Peer Y, Inzé D, Mueller-Roeber B, Vandepoele K., Nucleic Acids Res 43(database issue), 2015
PMID: 25324309
Genome-wide analysis of the expansin gene superfamily reveals Brassica rapa-specific evolutionary dynamics upon whole genome triplication.
Krishnamurthy P, Hong JK, Kim JA, Jeong MJ, Lee YH, Lee SI., Mol Genet Genomics 290(2), 2015
PMID: 25325993
Molecular evolution and transcriptional regulation of the oilseed rape proline dehydrogenase genes suggest distinct roles of proline catabolism during development.
Faës P, Deleu C, Aïnouche A, Le Cahérec F, Montes E, Clouet V, Gouraud AM, Albert B, Orsel M, Lassalle G, Leport L, Bouchereau A, Niogret MF., Planta 241(2), 2015
PMID: 25326771
Identification of AHK2- and AHK3-like cytokinin receptors in Brassica napus reveals two subfamilies of AHK2 orthologues.
Kuderová A, Gallová L, Kuricová K, Nejedlá E, Čurdová A, Micenková L, Plíhal O, Šmajs D, Spíchal L, Hejátko J., J Exp Bot 66(1), 2015
PMID: 25336686
Identification and expression analysis of cold and freezing stress responsive genes of Brassica oleracea.
Ahmed NU, Jung HJ, Park JI, Cho YG, Hur Y, Nou IS., Gene 554(2), 2015
PMID: 25445291
QTL analysis of root morphology, flowering time, and yield reveals trade-offs in response to drought in Brassica napus.
Fletcher RS, Mullen JL, Heiliger A, McKay JK., J Exp Bot 66(1), 2015
PMID: 25371500
Genome-wide identification and comparative expression analysis reveal a rapid expansion and functional divergence of duplicated genes in the WRKY gene family of cabbage, Brassica oleracea var. capitata.
Yao QY, Xia EH, Liu FH, Gao LZ., Gene 557(1), 2015
PMID: 25481634
Investigation of terpene diversification across multiple sequenced plant genomes.
Boutanaev AM, Moses T, Zi J, Nelson DR, Mugford ST, Peters RJ, Osbourn A., Proc Natl Acad Sci U S A 112(1), 2015
PMID: 25502595
Anthocyanin biosynthesis for cold and freezing stress tolerance and desirable color in Brassica rapa.
Ahmed NU, Park JI, Jung HJ, Hur Y, Nou IS., Funct Integr Genomics 15(4), 2015
PMID: 25504198
Generation and characterization of tribenuron-methyl herbicide-resistant rapeseed (Brasscia napus) for hybrid seed production using chemically induced male sterility.
Li H, Li J, Zhao B, Wang J, Yi L, Liu C, Wu J, King GJ, Liu K., Theor Appl Genet 128(1), 2015
PMID: 25504538
Flowering time regulation in crops—what did we learn from Arabidopsis?
Blümel M, Dally N, Jung C., Curr Opin Biotechnol 32(), 2015
PMID: 25553537
Patterns of evolutionary conservation of ascorbic acid-related genes following whole-genome triplication in Brassica rapa.
Duan W, Song X, Liu T, Huang Z, Ren J, Hou X, Du J, Li Y., Genome Biol Evol 7(1), 2015
PMID: 25552535
Transcriptomic Analysis for Different Sex Types of Ricinus communis L. during Development from Apical Buds to Inflorescences by Digital Gene Expression Profiling.
Tan M, Xue J, Wang L, Huang J, Fu C, Yan X., Front Plant Sci 6(), 2015
PMID: 26904031
Development of a leafy Brassica rapa fixed line collection for genetic diversity and population structure analysis
Pang W, Li X, Choi SR, Dhandapani V, Im S, Park MY, Jang CS, Yang MS, Ham IK, Lee EM, Kim W, Lee SS, Bonnema G, Park S, Piao Z, Lim YP., Mol Breed 35(1), 2015
PMID: IND601202073
Persistence of subgenomes in paleopolyploid cotton after 60 my of evolution.
Renny-Byfield S, Gong L, Gallagher JP, Wendel JF., Mol Biol Evol 32(4), 2015
PMID: 25573906
A generalized Watterson estimator for next-generation sequencing: From trios to autopolyploids.
Ferretti L, Ramos-Onsins SE., Theor Popul Biol 100C(), 2015
PMID: 25595553
The elucidation of stress memory inheritance in Brassica rapa plants.
Bilichak A, Ilnytskyy Y, Wóycicki R, Kepeshchuk N, Fogen D, Kovalchuk I., Front Plant Sci 6(), 2015
PMID: 25653665
Use of targeted SNP selection for an improved anchoring of the melon (Cucumis melo L.) scaffold genome assembly.
Argyris JM, Ruiz-Herrera A, Madriz-Masis P, Sanseverino W, Morata J, Pujol M, Ramos-Onsins SE, Garcia-Mas J., BMC Genomics 16(), 2015
PMID: 25612459
Genome-wide analysis of the R2R3-MYB transcription factor genes in Chinese cabbage (Brassica rapa ssp. pekinensis) reveals their stress and hormone responsive patterns.
Wang Z, Tang J, Hu R, Wu P, Hou XL, Song XM, Xiong AS., BMC Genomics 16(), 2015
PMID: 25613160
Characterization and stress-induced expression analysis of Alfin-like transcription factors in Brassica rapa.
Kayum MA, Park JI, Ahmed NU, Jung HJ, Saha G, Kang JG, Nou IS., Mol Genet Genomics 290(4), 2015
PMID: 25618423
Digital gene expression analysis of gene expression differences within Brassica diploids and allopolyploids.
Jiang J, Wang Y, Zhu B, Fang T, Fang Y, Wang Y., BMC Plant Biol 15(), 2015
PMID: 25623840
A draft genome of field pennycress (Thlaspi arvense) provides tools for the domestication of a new winter biofuel crop.
Dorn KM, Fankhauser JD, Wyse DL, Marks MD., DNA Res 22(2), 2015
PMID: 25632110
A complex interplay of tandem- and whole-genome duplication drives expansion of the L-type lectin receptor kinase gene family in the brassicaceae.
Hofberger JA, Nsibo DL, Govers F, Bouwmeester K, Schranz ME., Genome Biol Evol 7(3), 2015
PMID: 25635042
Metabolite-based genome-wide association studies in plants.
Luo J., Curr Opin Plant Biol 24(), 2015
PMID: 25637954
Genome-wide analysis of Dof family transcription factors and their responses to abiotic stresses in Chinese cabbage.
Ma J, Li MY, Wang F, Tang J, Xiong AS., BMC Genomics 16(), 2015
PMID: 25636232
A whole-genome shotgun approach for assembling and anchoring the hexaploid bread wheat genome.
Chapman JA, Mascher M, Buluç A, Barry K, Georganas E, Session A, Strnadova V, Jenkins J, Sehgal S, Oliker L, Schmutz J, Yelick KA, Scholz U, Waugh R, Poland JA, Muehlbauer GJ, Stein N, Rokhsar DS., Genome Biol 16(), 2015
PMID: 25637298
Carotenoid identification and molecular analysis of carotenoid isomerase-encoding BrCRTISO, the candidate gene for inner leaf orange coloration in Chinese cabbage
Li P, Zhang S, Zhang S, Li F, Zhang H, Liu X, Wu J, Wang X, Sun R., Mol Breed 35(2), 2015
PMID: IND601207887
Duplicate gene divergence by changes in microRNA binding sites in Arabidopsis and Brassica.
Wang S, Wang S, Adams KL., Genome Biol Evol 7(3), 2015
PMID: 25644246
Genome-wide SNP identification and QTL mapping for black rot resistance in cabbage.
Lee J, Izzah NK, Jayakodi M, Perumal S, Joh HJ, Lee HJ, Lee SC, Park JY, Yang KW, Nou IS, Seo J, Yoo J, Suh Y, Ahn K, Lee JH, Choi GJ, Yu Y, Kim H, Yang TJ., BMC Plant Biol 15(), 2015
PMID: 25644124
The Brassica napus receptor-like protein RLM2 is encoded by a second allele of the LepR3/Rlm2 blackleg resistance locus.
Larkan NJ, Ma L, Borhan MH., Plant Biotechnol J 13(7), 2015
PMID: 25644479
Lineage-specific evolution of Methylthioalkylmalate synthases (MAMs) involved in glucosinolates biosynthesis.
Zhang J, Wang X, Cheng F, Wu J, Liang J, Yang W, Wang X., Front Plant Sci 6(), 2015
PMID: 25691886
Nascent transcription affected by RNA polymerase IV in Zea mays.
Erhard KF, Talbot JE, Deans NC, McClish AE, Hollick JB., Genetics 199(4), 2015
PMID: 25653306
Transcriptome analysis of canola (Brassica napus) under salt stress at the germination stage.
Long W, Zou X, Zhang X., PLoS One 10(2), 2015
PMID: 25679513
Molecular characterization and transcriptome analysis of orange head Chinese cabbage (Brassica rapa L. ssp. pekinensis).
Zhang J, Yuan H, Fei Z, Pogson BJ, Zhang L, Li L., Planta 241(6), 2015
PMID: 25686795
High-throughput genotyping for species identification and diversity assessment in germplasm collections.
Mason AS, Zhang J, Tollenaere R, Vasquez Teuber P, Dalton-Morgan J, Hu L, Yan G, Edwards D, Redden R, Batley J., Mol Ecol Resour 15(5), 2015
PMID: 25641370
Discovery of novel genes derived from transposable elements using integrative genomic analysis.
Hoen DR, Bureau TE., Mol Biol Evol 32(6), 2015
PMID: 25713212
Transcriptomic analysis reveals differential gene expressions for cell growth and functional secondary metabolites in induced autotetraploid of Chinese woad (Isatis indigotica Fort.).
Zhou Y, Kang L, Liao S, Pan Q, Ge X, Li Z., PLoS One 10(3), 2015
PMID: 25739089
Two linked pairs of Arabidopsis TNL resistance genes independently confer recognition of bacterial effector AvrRps4.
Saucet SB, Ma Y, Sarris PF, Furzer OJ, Sohn KH, Jones JD., Nat Commun 6(), 2015
PMID: 25744164
Development of genic cleavage markers in association with seed glucosinolate content in canola.
Fu Y, Lu K, Qian L, Mei J, Wei D, Peng X, Xu X, Li J, Frauen M, Dreyer F, Snowdon RJ, Qian W., Theor Appl Genet 128(6), 2015
PMID: 25748114
Allelic polymorphism of GIGANTEA is responsible for naturally occurring variation in circadian period in Brassica rapa.
Xie Q, Lou P, Hermand V, Aman R, Park HJ, Yun DJ, Kim WY, Salmela MJ, Ewers BE, Weinig C, Khan SL, Schaible DL, McClung CR., Proc Natl Acad Sci U S A 112(12), 2015
PMID: 25775524
High-resolution skim genotyping by sequencing reveals the distribution of crossovers and gene conversions in Cicer arietinum and Brassica napus.
Bayer PE, Ruperao P, Mason AS, Stiller J, Chan CK, Hayashi S, Long Y, Meng J, Sutton T, Visendi P, Varshney RK, Batley J, Edwards D., Theor Appl Genet 128(6), 2015
PMID: 25754422
Circadian Clock Genes Universally Control Key Agricultural Traits.
Bendix C, Marshall CM, Harmon FG., Mol Plant 8(8), 2015
PMID: 25772379
Genome-wide identification and characterization of MADS-box family genes related to organ development and stress resistance in Brassica rapa.
Saha G, Park JI, Jung HJ, Ahmed NU, Kayum MA, Chung MY, Hur Y, Cho YG, Watanabe M, Nou IS., BMC Genomics 16(), 2015
PMID: 25881193
Unlimited Thirst for Genome Sequencing, Data Interpretation, and Database Usage in Genomic Era: The Road towards Fast-Track Crop Plant Improvement.
Dhanapal AP, Govindaraj M., Genet Res Int 2015(), 2015
PMID: 25874133
Dynamic and comparative QTL analysis for plant height in different developmental stages of Brassica napus L.
Wang X, Wang H, Long Y, Liu L, Zhao Y, Tian J, Zhao W, Li B, Chen L, Chao H, Li M., Theor Appl Genet 128(6), 2015
PMID: 25796183
Genome-wide identification of evolutionarily conserved alternative splicing events in flowering plants.
Chamala S, Feng G, Chavarro C, Barbazuk WB., Front Bioeng Biotechnol 3(), 2015
PMID: 25859541
New insights into the genetic networks affecting seed fatty acid concentrations in Brassica napus.
Wang X, Long Y, Yin Y, Zhang C, Gan L, Liu L, Yu L, Meng J, Li M., BMC Plant Biol 15(), 2015
PMID: 25888376
Sequencing consolidates molecular markers with plant breeding practice.
Yang H, Li C, Lam HM, Clements J, Yan G, Zhao S., Theor Appl Genet 128(5), 2015
PMID: 25821196
Expression patterns of Brassica napus genes implicate IPT, CKX, sucrose transporter, cell wall invertase, and amino acid permease gene family members in leaf, flower, silique, and seed development.
Song J, Jiang L, Jameson PE., J Exp Bot 66(16), 2015
PMID: 25873685
Genome-wide identification of aquaporin encoding genes in Brassica oleracea and their phylogenetic sequence comparison to Brassica crops and Arabidopsis.
Diehn TA, Pommerrenig B, Bernhardt N, Hartmann A, Bienert GP., Front Plant Sci 6(), 2015
PMID: 25904922
Beyond the thale: comparative genomics and genetics of Arabidopsis relatives.
Koenig D, Weigel D., Nat Rev Genet 16(5), 2015
PMID: 25854181
Comparative transcriptome analysis of the petal degeneration mutant pdm in Chinese cabbage (Brassica campestris ssp. pekinensis) using RNA-Seq.
Huang S, Liu Z, Yao R, Li D, Feng H., Mol Genet Genomics 290(5), 2015
PMID: 25860116
Recent progress in the use of 'omics technologies in brassicaceous vegetables.
Witzel K, Neugart S, Ruppel S, Schreiner M, Wiesner M, Baldermann S., Front Plant Sci 6(), 2015
PMID: 25926843
Genome Alignment Spanning Major Poaceae Lineages Reveals Heterogeneous Evolutionary Rates and Alters Inferred Dates for Key Evolutionary Events.
Wang X, Wang J, Jin D, Guo H, Lee TH, Liu T, Paterson AH., Mol Plant 8(6), 2015
PMID: 25896453
Sequencing of allotetraploid cotton (Gossypium hirsutum L. acc. TM-1) provides a resource for fiber improvement.
Zhang T, Hu Y, Jiang W, Fang L, Guan X, Chen J, Zhang J, Saski CA, Scheffler BE, Stelly DM, Hulse-Kemp AM, Wan Q, Liu B, Liu C, Wang S, Pan M, Wang Y, Wang D, Ye W, Chang L, Zhang W, Song Q, Kirkbride RC, Chen X, Dennis E, Llewellyn DJ, Peterson DG, Thaxton P, Jones DC, Wang Q, Xu X, Zhang H, Wu H, Zhou L, Mei G, Chen S, Tian Y, Xiang D, Li X, Ding J, Zuo Q, Tao L, Liu Y, Li J, Lin Y, Hui Y, Cao Z, Cai C, Zhu X, Jiang Z, Zhou B, Guo W, Li R, Chen ZJ., Nat Biotechnol 33(5), 2015
PMID: 25893781
Genome-wide identification of SSR and SNP markers from the non-heading Chinese cabbage for comparative genomic analyses.
Song X, Ge T, Li Y, Hou X., BMC Genomics 16(), 2015
PMID: 25908429
Molecular characterization of BZR transcription factor family and abiotic stress induced expression profiling in Brassica rapa.
Saha G, Park JI, Jung HJ, Ahmed NU, Kayum MA, Kang JG, Nou IS., Plant Physiol Biochem 92(), 2015
PMID: 25931321
Mapping QTLs of resistance to head splitting in cabbage (Brassica oleracea L.var. capitata L.)
Pang W, Li X, Choi SR, Nguyen VD, Dhandapani V, Kim YY, Ramchiary N, Kim JG, Edwards D, Batley J, Na J, Kim H, Lim YP., Mol Breed 35(5), 2015
PMID: IND601330483
Transcriptome Analysis Comparison of Lipid Biosynthesis in the Leaves and Developing Seeds of Brassica napus.
Chen J, Tan RK, Guo XJ, Fu ZL, Wang Z, Zhang ZY, Tan XL., PLoS One 10(5), 2015
PMID: 25965272
Identification and expression analysis of BoMF25, a novel polygalacturonase gene involved in pollen development of Brassica oleracea.
Lyu M, Liang Y, Yu Y, Ma Z, Song L, Yue X, Cao J., Plant Reprod 28(2), 2015
PMID: 25967087
De Novo Assembly and Characterization of Stress Transcriptome in a Salinity-Tolerant Variety CS52 of Brassica juncea.
Sharma R, Mishra M, Gupta B, Parsania C, Singla-Pareek SL, Pareek A., PLoS One 10(5), 2015
PMID: 25970274
The dynamic loss and gain of introns during the evolution of the Brassicaceae.
Milia G, Camiolo S, Avesani L, Porceddu A., Plant J 82(6), 2015
PMID: 25899207
A bi-filtering method for processing single nucleotide polymorphism array data improves the quality of genetic map and accuracy of quantitative trait locus mapping in doubled haploid populations of polyploid Brassica napus.
Cai G, Yang Q, Yi B, Fan C, Zhang C, Edwards D, Batley J, Zhou Y., BMC Genomics 16(), 2015
PMID: 26018616
Molecular characterization of BrMYB28 and BrMYB29 paralogous transcription factors involved in the regulation of aliphatic glucosinolate profiles in Brassica rapa ssp. pekinensis.
Baskar V, Park SW., C R Biol 338(7), 2015
PMID: 26043798
Characterization of FAE1 in the zero erucic acid germplasm of Brassica rapa L.
Yan G, Li D, Cai M, Gao G, Chen B, Xu K, Li J, Li F, Wang N, Qiao J, Li H, Zhang T, Wu X., Breed Sci 65(3), 2015
PMID: 26175623
Association mapping of seed quality traits in Brassica napus L. using GWAS and candidate QTL approaches
Gajardo HA, Wittkop B, Soto-Cerda B, Higgins EE, Parkin IAP, Snowdon RJ, Federico ML, Iniguez-Luy FL., Mol Breed 35(6), 2015
PMID: IND604398792
Large-Scale Evolutionary Analysis of Genes and Supergene Clusters from Terpenoid Modular Pathways Provides Insights into Metabolic Diversification in Flowering Plants.
Hofberger JA, Ramirez AM, Bergh Ev, Zhu X, Bouwmeester HJ, Schuurink RC, Schranz ME., PLoS One 10(6), 2015
PMID: 26046541
Analysis of the giant genomes of Fritillaria (Liliaceae) indicates that a lack of DNA removal characterizes extreme expansions in genome size.
Kelly LJ, Renny-Byfield S, Pellicer J, Macas J, Novák P, Neumann P, Lysak MA, Day PD, Berger M, Fay MF, Nichols RA, Leitch AR, Leitch IJ., New Phytol 208(2), 2015
PMID: 26061193
Seedling development traits in Brassica napus examined by gene expression analysis and association mapping.
Körber N, Bus A, Li J, Higgins J, Bancroft I, Higgins EE, Parkin IA, Salazar-Colqui B, Snowdon RJ, Stich B., BMC Plant Biol 15(), 2015
PMID: 26055390
Genome-wide survey and expression analysis of the PUB family in Chinese cabbage (Brassica rapa ssp. pekinesis).
Wang C, Duan W, Riquicho AR, Jing Z, Liu T, Hou X, Li Y., Mol Genet Genomics 290(6), 2015
PMID: 26054324
The radish genome and comprehensive gene expression profile of tuberous root formation and development.
Mitsui Y, Shimomura M, Komatsu K, Namiki N, Shibata-Hatta M, Imai M, Katayose Y, Mukai Y, Kanamori H, Kurita K, Kagami T, Wakatsuki A, Ohyanagi H, Ikawa H, Minaka N, Nakagawa K, Shiwa Y, Sasaki T., Sci Rep 5(), 2015
PMID: 26056784
Construction of chromosome segment substitution lines enables QTL mapping for flowering and morphological traits in Brassica rapa.
Li X, Wang W, Wang Z, Li K, Lim YP, Piao Z., Front Plant Sci 6(), 2015
PMID: 26106405
Involvement of genes encoding ABI1 protein phosphatases in the response of Brassica napus L. to drought stress.
Babula-Skowrońska D, Ludwików A, Cieśla A, Olejnik A, Cegielska-Taras T, Bartkowiak-Broda I, Sadowski J., Plant Mol Biol 88(4-5), 2015
PMID: 26059040
An integrated database of wood-formation related genes in plants.
Xu T, Ma T, Hu Q, Liu J., Sci Rep 5(), 2015
PMID: 26078228
Widespread and evolutionary analysis of a MITE family Monkey King in Brassicaceae.
Dai S, Hou J, Long Y, Wang J, Li C, Xiao Q, Jiang X, Zou X, Zou J, Meng J., BMC Plant Biol 15(), 2015
PMID: 26084405
Molecular Evidence for Functional Divergence and Decay of a Transcription Factor Derived from Whole-Genome Duplication in Arabidopsis thaliana.
Lehti-Shiu MD, Uygun S, Moghe GD, Panchy N, Fang L, Hufnagel DE, Jasicki HL, Feig M, Shiu SH., Plant Physiol 168(4), 2015
PMID: 26103993
De Novo Regulatory Motif Discovery Identifies Significant Motifs in Promoters of Five Classes of Plant Dehydrin Genes.
Zolotarov Y, Strömvik M., PLoS One 10(6), 2015
PMID: 26114291
Defining the RNA-binding glycine-rich (RBG) gene superfamily: new insights into nomenclature, phylogeny, and evolutionary trends obtained by genome-wide comparative analysis of Arabidopsis, Chinese cabbage, rice and maize genomes.
Krishnamurthy P, Kim JA, Jeong MJ, Kang CH, Lee SI., Mol Genet Genomics 290(6), 2015
PMID: 26123085
Construction of Brassica A and C genome-based ordered pan-transcriptomes for use in rapeseed genomic research.
He Z, Cheng F, Li Y, Wang X, Parkin IA, Chalhoub B, Liu S, Bancroft I., Data Brief 4(), 2015
PMID: 26217816
Carotenoid biosynthetic genes in Brassica rapa: comparative genomic analysis, phylogenetic analysis, and expression profiling.
Li P, Zhang S, Zhang S, Li F, Zhang H, Cheng F, Wu J, Wang X, Sun R., BMC Genomics 16(), 2015
PMID: 26138916
Microspore culture reveals complex meiotic behaviour in a trigenomic Brassica hybrid.
Mason AS, Takahira J, Atri C, Samans B, Hayward A, Cowling WA, Batley J, Nelson MN., BMC Plant Biol 15(), 2015
PMID: 26152188
BcMF26a and BcMF26b Are Duplicated Polygalacturonase Genes with Divergent Expression Patterns and Functions in Pollen Development and Pollen Tube Formation in Brassica campestris.
Lyu M, Yu Y, Jiang J, Song L, Liang Y, Ma Z, Xiong X, Cao J., PLoS One 10(7), 2015
PMID: 26153985
Genome-Wide Profiling of Histone Modifications (H3K9me2 and H4K12ac) and Gene Expression in Rust (Uromyces appendiculatus) Inoculated Common Bean (Phaseolus vulgaris L.).
Ayyappan V, Kalavacharla V, Thimmapuram J, Bhide KP, Sripathi VR, Smolinski TG, Manoharan M, Thurston Y, Todd A, Kingham B., PLoS One 10(7), 2015
PMID: 26167691
Genome-Wide Survey and Expression Profile Analysis of the Mitogen-Activated Protein Kinase (MAPK) Gene Family in Brassica rapa.
Lu K, Guo W, Lu J, Yu H, Qu C, Tang Z, Li J, Chai Y, Liang Y., PLoS One 10(7), 2015
PMID: 26173020
Arabidopsis PCH2 Mediates Meiotic Chromosome Remodeling and Maturation of Crossovers.
Lambing C, Osman K, Nuntasoontorn K, West A, Higgins JD, Copenhaver GP, Yang J, Armstrong SJ, Mechtler K, Roitinger E, Franklin FC., PLoS Genet 11(7), 2015
PMID: 26182244
Leaf and root glucosinolate profiles of Chinese cabbage (Brassica rapa ssp. pekinensis) as a systemic response to methyl jasmonate and salicylic acid elicitation.
Zang YX, Ge JL, Huang LH, Gao F, Lv XS, Zheng WW, Hong SB, Zhu ZJ., J Zhejiang Univ Sci B 16(8), 2015
PMID: 26238545
Sequence and expression variation in SUPPRESSOR of OVEREXPRESSION of CONSTANS 1 (SOC1): homeolog evolution in Indian Brassicas.
Sri T, Mayee P, Singh A., Dev Genes Evol 225(5), 2015
PMID: 26276216
Generation and characterization of Brassica rapa ssp. pekinensis - B. oleracea var. capitata monosomic and disomic alien addition lines.
Gu AX, Shen SX, Wang YH, Zhao JJ, Xuan SX, Chen XP, Li XF, Luo SX, Zhao YJ., J Genet 94(3), 2015
PMID: 26440082
Molecular breeding in Brassica for salt tolerance: importance of microsatellite (SSR) markers for molecular breeding in Brassica.
Kumar M, Choi JY, Kumari N, Pareek A, Kim SR., Front Plant Sci 6(), 2015
PMID: 26388887
Identification, evolution, and expression partitioning of miRNAs in allopolyploid Brassica napus.
Shen E, Zou J, Hubertus Behrens F, Chen L, Ye C, Dai S, Li R, Ni M, Jiang X, Qiu J, Liu Y, Wang W, Zhu QH, Chalhoub B, Bancroft I, Meng J, Cai D, Fan L., J Exp Bot 66(22), 2015
PMID: 26357884
Transcriptome Analysis of Interspecific Hybrid between Brassica napus and B. rapa Reveals Heterosis for Oil Rape Improvement.
Zhang J, Li G, Li H, Pu X, Jiang J, Chai L, Zheng B, Cui C, Yang Z, Zhu Y, Jiang L., Int J Genomics 2015(), 2015
PMID: 26448924
Improving the Annotation of Arabidopsis lyrata Using RNA-Seq Data.
Rawat V, Abdelsamad A, Pietzenuk B, Seymour DK, Koenig D, Weigel D, Pecinka A, Schneeberger K., PLoS One 10(9), 2015
PMID: 26382944
A Conserved Cytochrome P450 Evolved in Seed Plants Regulates Flower Maturation.
Liu Z, Boachon B, Lugan R, Tavares R, Erhardt M, Mutterer J, Demais V, Pateyron S, Brunaud V, Ohnishi T, Pencik A, Achard P, Gong F, Hedden P, Werck-Reichhart D, Renault H., Mol Plant 8(12), 2015
PMID: 26388305
Two cytochromes P450 catalyze S-heterocyclizations in cabbage phytoalexin biosynthesis.
Klein AP, Sattely ES., Nat Chem Biol 11(11), 2015
PMID: 26389737
Comparative quantitative trait loci for silique length and seed weight in Brassica napus.
Fu Y, Wei D, Dong H, He Y, Cui Y, Mei J, Wan H, Li J, Snowdon R, Friedt W, Li X, Qian W., Sci Rep 5(), 2015
PMID: 26394547
Genome-wide gene expression perturbation induced by loss of C2 chromosome in allotetraploid Brassica napus L.
Zhu B, Shao Y, Pan Q, Ge X, Li Z., Front Plant Sci 6(), 2015
PMID: 26442076
Comparative genomic analysis of duplicated homoeologous regions involved in the resistance of Brassica napus to stem canker.
Fopa Fomeju B, Falentin C, Lassalle G, Manzanares-Dauleux MJ, Delourme R., Front Plant Sci 6(), 2015
PMID: 26442081
A Time-Calibrated Road Map of Brassicaceae Species Radiation and Evolutionary History.
Hohmann N, Wolf EM, Lysak MA, Koch MA., Plant Cell 27(10), 2015
PMID: 26410304
Comprehensive analysis of the flowering genes in Chinese cabbage and examination of evolutionary pattern of CO-like genes in plant kingdom.
Song X, Duan W, Huang Z, Liu G, Wu P, Liu T, Li Y, Hou X., Sci Rep 5(), 2015
PMID: 26416765
Characterization and Development of EST-SSRs by Deep Transcriptome Sequencing in Chinese Cabbage (Brassica rapa L. ssp. pekinensis).
Ding Q, Li J, Wang F, Zhang Y, Li H, Zhang J, Gao J., Int J Genomics 2015(), 2015
PMID: 26504770
Linkage and regional association analysis reveal two new tightly-linked major-QTLs for pod number and seed number per pod in rapeseed (Brassica napus L.).
Shi J, Zhan J, Yang Y, Ye J, Huang S, Li R, Wang X, Liu G, Wang H., Sci Rep 5(), 2015
PMID: 26434411
Identification of dopamine receptors across the extant avian family tree and analysis with other clades uncovers a polyploid expansion among vertebrates.
Haug-Baltzell A, Jarvis ED, McCarthy FM, Lyons E., Front Neurosci 9(), 2015
PMID: 26500483
Genome-wide DNA methylation profiling by modified reduced representation bisulfite sequencing in Brassica rapa suggests that epigenetic modifications play a key role in polyploid genome evolution.
Chen X, Ge X, Wang J, Tan C, King GJ, Liu K., Front Plant Sci 6(), 2015
PMID: 26500672
Overexpression of Three Glucosinolate Biosynthesis Genes in Brassica napus Identifies Enhanced Resistance to Sclerotinia sclerotiorum and Botrytis cinerea.
Zhang Y, Huai D, Yang Q, Cheng Y, Ma M, Kliebenstein DJ, Zhou Y., PLoS One 10(10), 2015
PMID: 26465156
Molecular evolution, characterization, and expression analysis of SnRK2 gene family in Pak-choi (Brassica rapa ssp. chinensis).
Huang Z, Tang J, Duan W, Wang Z, Song X, Hou X., Front Plant Sci 6(), 2015
PMID: 26557127
The miRNAs and their regulatory networks responsible for pollen abortion in Ogura-CMS Chinese cabbage revealed by high-throughput sequencing of miRNAs, degradomes, and transcriptomes.
Wei X, Zhang X, Yao Q, Yuan Y, Li X, Wei F, Zhao Y, Zhang Q, Wang Z, Jiang W, Zhang X., Front Plant Sci 6(), 2015
PMID: 26557132
BnaC9.SMG7b Functions as a Positive Regulator of the Number of Seeds per Silique in Brassica napus by Regulating the Formation of Functional Female Gametophytes.
Li S, Chen L, Zhang L, Li X, Liu Y, Wu Z, Dong F, Wan L, Liu K, Hong D, Yang G., Plant Physiol 169(4), 2015
PMID: 26494121
A transposon insertion in FLOWERING LOCUS T is associated with delayed flowering in Brassica rapa.
Zhang X, Meng L, Liu B, Hu Y, Cheng F, Liang J, Aarts MG, Wang X, Wu J., Plant Sci 241(), 2015
PMID: 26706072
Dissecting the complex molecular evolution and expression of polygalacturonase gene family in Brassica rapa ssp. chinensis.
Liang Y, Yu Y, Shen X, Dong H, Lyu M, Xu L, Ma Z, Liu T, Cao J., Plant Mol Biol 89(6), 2015
PMID: 26506823
Impacts of Whole-Genome Triplication on MIRNA Evolution in Brassica rapa.
Sun C, Wu J, Liang J, Schnable JC, Yang W, Cheng F, Wang X., Genome Biol Evol 7(11), 2015
PMID: 26527651
Genome-wide analysis of the SBP-box gene family in Chinese cabbage (Brassica rapa subsp. pekinensis).
Tan HW, Song XM, Duan WK, Wang Y, Hou XL., Genome 58(11), 2015
PMID: 26599708
The divergence and positive selection of the plant-specific BURP-containing protein family.
Wang L, Wu N, Zhu Y, Song W, Zhao X, Li Y, Hu Y., Ecol Evol 5(22), 2015
PMID: 30151141
Genome-specific differential gene expressions in resynthesized Brassica allotetraploids from pair-wise crosses of three cultivated diploids revealed by RNA-seq.
Zhang D, Pan Q, Cui C, Tan C, Ge X, Shao Y, Li Z., Front Plant Sci 6(), 2015
PMID: 26583027
Brassica database (BRAD) version 2.0: integrating and mining Brassicaceae species genomic resources.
Wang X, Wu J, Liang J, Cheng F, Wang X., Database (Oxford) 2015(), 2015
PMID: 26589635
Diversification and evolution of the SDG gene family in Brassica rapa after the whole genome triplication.
Dong H, Liu D, Han T, Zhao Y, Sun J, Lin S, Cao J, Chen ZH, Huang L., Sci Rep 5(), 2015
PMID: 26596461
The power of single molecule real-time sequencing technology in the de novo assembly of a eukaryotic genome.
Sakai H, Naito K, Ogiso-Tanaka E, Takahashi Y, Iseki K, Muto C, Satou K, Teruya K, Shiroma A, Shimoji M, Hirano T, Itoh T, Kaga A, Tomooka N., Sci Rep 5(), 2015
PMID: 26616024
Variation in the flowering time orthologs BrFLC and BrSOC1 in a natural population of Brassica rapa.
Franks SJ, Perez-Sweeney B, Strahl M, Nowogrodzki A, Weber JJ, Lalchan R, Jordan KP, Litt A., PeerJ 3(), 2015
PMID: 26644966
Genome-Wide Identification and Analysis of the VQ Motif-Containing Protein Family in Chinese Cabbage (Brassica rapa L. ssp. Pekinensis).
Zhang G, Wang F, Li J, Ding Q, Zhang Y, Li H, Zhang J, Gao J., Int J Mol Sci 16(12), 2015
PMID: 26633387
Species-wide genome sequence and nucleotide polymorphisms from the model allopolyploid plant Brassica napus.
Schmutzer T, Samans B, Dyrszka E, Ulpinnis C, Weise S, Stengel D, Colmsee C, Lespinasse D, Micic Z, Abel S, Duchscherer P, Breuer F, Abbadi A, Leckband G, Snowdon R, Scholz U., Sci Data 2(), 2015
PMID: 26647166
Understanding Brassicaceae evolution through ancestral genome reconstruction.
Murat F, Louis A, Maumus F, Armero A, Cooke R, Quesneville H, Roest Crollius H, Salse J., Genome Biol 16(), 2015
PMID: 26653025
Dosage Sensitivity of RPL9 and Concerted Evolution of Ribosomal Protein Genes in Plants.
Devis D, Firth SM, Liang Z, Byrne ME., Front Plant Sci 6(), 2015
PMID: 26734020
Retention, Molecular Evolution, and Expression Divergence of the Auxin/Indole Acetic Acid and Auxin Response Factor Gene Families in Brassica Rapa Shed Light on Their Evolution Patterns in Plants.
Huang Z, Duan W, Song X, Tang J, Wu P, Zhang B, Hou X., Genome Biol Evol 8(2), 2015
PMID: 26721260
Plant genome sequencing - applications for crop improvement.
Bolger ME, Weisshaar B, Scholz U, Stein N, Usadel B, Mayer KF., Curr Opin Biotechnol 26(), 2014
PMID: 24679255
Crossover rate between homologous chromosomes and interference are regulated by the addition of specific unpaired chromosomes in Brassica.
Suay L, Zhang D, Eber F, Jouy H, Lodé M, Huteau V, Coriton O, Szadkowski E, Leflon M, Martin OC, Falque M, Jenczewski E, Paillard S, Chèvre AM., New Phytol 201(2), 2014
PMID: 24117470
Identification and characterization of NF-Y transcription factor families in Canola (Brassica napus L.).
Liang M, Yin X, Lin Z, Zheng Q, Liu G, Zhao G., Planta 239(1), 2014
PMID: 24097262
Genome-wide microsatellite characterization and marker development in the sequenced Brassica crop species.
Shi J, Huang S, Zhan J, Yu J, Wang X, Hua W, Liu S, Liu G, Wang H., DNA Res 21(1), 2014
PMID: 24130371
Characterization of the small RNA transcriptome in plant-microbe (Brassica/Erwinia) interactions by high-throughput sequencing.
Sun CB., Biotechnol Lett 36(2), 2014
PMID: 24126536
The fate of tandemly duplicated genes assessed by the expression analysis of a group of Arabidopsis thaliana RING-H2 ubiquitin ligase genes of the ATL family.
Aguilar-Hernández V, Guzmán P., Plant Mol Biol 84(4-5), 2014
PMID: 24135966
P-MITE: a database for plant miniature inverted-repeat transposable elements.
Chen J, Hu Q, Zhang Y, Lu C, Kuang H., Nucleic Acids Res 42(database issue), 2014
PMID: 24174541
The widespread crucifer species Cardamine flexuosa is an allotetraploid with a conserved subgenomic structure.
Mandáková T, Marhold K, Lysak MA., New Phytol 201(3), 2014
PMID: 24400905
Transposon variation by order during allopolyploidisation between Brassica oleracea and Brassica rapa.
An Z, Tang Z, Ma B, Mason AS, Guo Y, Yin J, Gao C, Wei L, Li J, Fu D., Plant Biol (Stuttg) 16(4), 2014
PMID: 24176077
Genome-wide analysis of the bHLH transcription factor family in Chinese cabbage (Brassica rapa ssp. pekinensis).
Song XM, Huang ZN, Duan WK, Ren J, Liu TK, Li Y, Hou XL., Mol Genet Genomics 289(1), 2014
PMID: 24241166
Natural variations and genome-wide association studies in crop plants.
Huang X, Han B., Annu Rev Plant Biol 65(), 2014
PMID: 24274033
Two evolutionarily distinct classes of paleopolyploidy.
Garsmeur O, Schnable JC, Almeida A, Jourda C, D'Hont A, Freeling M., Mol Biol Evol 31(2), 2014
PMID: 24296661
MicroRNA319a-targeted Brassica rapa ssp. pekinensis TCP genes modulate head shape in chinese cabbage by differential cell division arrest in leaf regions.
Mao Y, Wu F, Yu X, Bai J, Zhong W, He Y., Plant Physiol 164(2), 2014
PMID: 24351684
Genome-wide analysis of the GRAS gene family in Chinese cabbage (Brassica rapa ssp. pekinensis).
Song XM, Liu TK, Duan WK, Ma QH, Ren J, Wang Z, Li Y, Hou XL., Genomics 103(1), 2014
PMID: 24365788
Multiple copies of eukaryotic translation initiation factors in Brassica rapa facilitate redundancy, enabling diversification through variation in splicing and broad-spectrum virus resistance.
Nellist CF, Qian W, Jenner CE, Moore JD, Zhang S, Wang X, Briggs WH, Barker GC, Sun R, Walsh JA., Plant J 77(2), 2014
PMID: 24274163
Association of molecular markers derived from the BrCRTISO1 gene with prolycopene-enriched orange-colored leaves in Brassica rapa [corrected]..
Lee S, Lee SC, Byun DH, Lee DY, Park JY, Lee JH, Lee HO, Sung SH, Yang TJ., Theor Appl Genet 127(1), 2014
PMID: 24121567
Nonadditive gene expression in polyploids.
Yoo MJ, Liu X, Pires JC, Soltis PS, Soltis DE., Annu Rev Genet 48(), 2014
PMID: 25421600
Say it with flowers: Flowering acceleration by root communication.
Falik O, Hoffmann I, Novoplansky A., Plant Signal Behav 9(4), 2014
PMID: 25764422
Genetic dissection of leaf development in Brassica rapa using a genetical genomics approach.
Xiao D, Wang H, Basnet RK, Zhao J, Lin K, Hou X, Bonnema G., Plant Physiol 164(3), 2014
PMID: 24394778
Selection and evaluation of novel reference genes for quantitative reverse transcription PCR (qRT-PCR) based on genome and transcriptome data in Brassica napus L.
Yang H, Liu J, Huang S, Guo T, Deng L, Hua W., Gene 538(1), 2014
PMID: 24406618
Genome-wide identification, phylogenetic analysis, expression profiling, and protein-protein interaction properties of TOPLESS gene family members in tomato.
Hao Y, Wang X, Li X, Bassa C, Mila I, Audran C, Maza E, Li Z, Bouzayen M, van der Rest B, Zouine M., J Exp Bot 65(4), 2014
PMID: 24399174
Assessing quantitative resistance against Leptosphaeria maculans (phoma stem canker) in Brassica napus (oilseed rape) in young plants.
Huang YJ, Qi A, King GJ, Fitt BD., PLoS One 9(1), 2014
PMID: 24454767
High-resolution molecular karyotyping uncovers pairing between ancestrally related Brassica chromosomes.
Mason AS, Batley J, Bayer PE, Hayward A, Cowling WA, Nelson MN., New Phytol 202(3), 2014
PMID: 24471809
Analyses of hypomethylated oil palm gene space.
Low ET, Rosli R, Jayanthi N, Mohd-Amin AH, Azizi N, Chan KL, Maqbool NJ, Maclean P, Brauning R, McCulloch A, Moraga R, Ong-Abdullah M, Singh R., PLoS One 9(1), 2014
PMID: 24497974
Genome-wide survey and expression analysis of the putative non-specific lipid transfer proteins in Brassica rapa L.
Li J, Gao G, Xu K, Chen B, Yan G, Li F, Qiao J, Zhang T, Wu X., PLoS One 9(1), 2014
PMID: 24497919
Genotype-environment interactions affecting preflowering physiological and morphological traits of Brassica rapa grown in two watering regimes.
El-Soda M, Boer MP, Bagheri H, Hanhart CJ, Koornneef M, Aarts MG., J Exp Bot 65(2), 2014
PMID: 24474811
Karyotype of mitotic metaphase and meiotic diakinesis in non-heading Chinese cabbage
Zheng Js, Sun Cz, Zhang Sn, Hou Xl., Plant Syst Evol 300(2), 2014
PMID: IND500721536
Revisiting the evolutionary history and roles of protein phosphatases with Kelch-like domains in plants.
Maselli GA, Slamovits CH, Bianchi JI, Vilarrasa-Blasi J, Caño-Delgado AI, Mora-García S., Plant Physiol 164(3), 2014
PMID: 24492333
Genome survey sequencing provides clues into glucosinolate biosynthesis and flowering pathway evolution in allotetrapolyploid Brassica juncea.
Yang J, Song N, Zhao X, Qi X, Hu Z, Zhang M., BMC Genomics 15(), 2014
PMID: 24502855
Genome-wide association study dissects the genetic architecture of seed weight and seed quality in rapeseed (Brassica napus L.).
Li F, Chen B, Xu K, Wu J, Song W, Bancroft I, Harper AL, Trick M, Liu S, Gao G, Wang N, Yan G, Qiao J, Li J, Li H, Xiao X, Zhang T, Wu X., DNA Res 21(4), 2014
PMID: 24510440
The fate of chromosomes and alleles in an allohexaploid Brassica population.
Mason AS, Nelson MN, Takahira J, Cowling WA, Alves GM, Chaudhuri A, Chen N, Ragu ME, Dalton-Morgan J, Coriton O, Huteau V, Eber F, Chèvre AM, Batley J., Genetics 197(1), 2014
PMID: 24558262
Sixteen cytosolic glutamine synthetase genes identified in the Brassica napus L. genome are differentially regulated depending on nitrogen regimes and leaf senescence.
Orsel M, Moison M, Clouet V, Thomas J, Leprince F, Canoy AS, Just J, Chalhoub B, Masclaux-Daubresse C., J Exp Bot 65(14), 2014
PMID: 24567494
Loss/retention and evolution of NBS-encoding genes upon whole genome triplication of Brassica rapa.
Wu P, Shao ZQ, Wu XZ, Wang Q, Wang B, Chen JQ, Hang YY, Xue JY., Gene 540(1), 2014
PMID: 24576745
Genome sequencing of the high oil crop sesame provides insight into oil biosynthesis.
Wang L, Yu S, Tong C, Zhao Y, Liu Y, Song C, Zhang Y, Zhang X, Wang Y, Hua W, Li D, Li D, Li F, Yu J, Xu C, Han X, Huang S, Tai S, Wang J, Xu X, Li Y, Liu S, Varshney RK, Wang J, Zhang X., Genome Biol 15(2), 2014
PMID: 24576357
Genome-wide identification, phylogeny, duplication, and expression analyses of two-component system genes in Chinese cabbage (Brassica rapa ssp. pekinensis).
Liu Z, Zhang M, Kong L, Lv Y, Zou M, Lu G, Cao J, Yu X., DNA Res 21(4), 2014
PMID: 24585003
Unique features of the loblolly pine (Pinus taeda L.) megagenome revealed through sequence annotation.
Wegrzyn JL, Liechty JD, Stevens KA, Wu LS, Loopstra CA, Vasquez-Gross HA, Dougherty WM, Lin BY, Zieve JJ, Martínez-García PJ, Holt C, Yandell M, Zimin AV, Yorke JA, Crepeau MW, Puiu D, Salzberg SL, Dejong PJ, Mockaitis K, Main D, Langley CH, Neale DB., Genetics 196(3), 2014
PMID: 24653211
Say it with flowers: flowering acceleration by root communication.
Falik O, Hoffmann I, Novoplansky A., Plant Signal Behav 9(3), 2014
PMID: 24598343
Genome-wide identification, classification and expression analysis of the heat shock transcription factor family in Chinese cabbage.
Song X, Liu G, Duan W, Liu T, Huang Z, Ren J, Li Y, Hou X., Mol Genet Genomics 289(4), 2014
PMID: 24609322
ER bodies in plants of the Brassicales order: biogenesis and association with innate immunity.
Nakano RT, Yamada K, Bednarek P, Nishimura M, Hara-Nishimura I., Front Plant Sci 5(), 2014
PMID: 24653729
Investment in plant research and development bears fruit in China.
Chong K, Xu Z., Plant Cell Rep 33(4), 2014
PMID: 24615161
QTL architecture of reproductive fitness characters in Brassica rapa.
Dechaine JM, Brock MT, Weinig C., BMC Plant Biol 14(), 2014
PMID: 24641198
Origin, inheritance, and gene regulatory consequences of genome dominance in polyploids.
Woodhouse MR, Cheng F, Pires JC, Lisch D, Freeling M, Wang X., Proc Natl Acad Sci U S A 111(14), 2014
PMID: 24706847
Identification of candidate genes for Fusarium yellows resistance in Chinese cabbage by differential expression analysis.
Shimizu M, Fujimoto R, Ying H, Pu ZJ, Ebe Y, Kawanabe T, Saeki N, Taylor JM, Kaji M, Dennis ES, Okazaki K., Plant Mol Biol 85(3), 2014
PMID: 24668026
Plant systems biology: insights, advances and challenges.
Sheth BP, Thaker VS., Planta 240(1), 2014
PMID: 24671625
Beyond genomic variation--comparison and functional annotation of three Brassica rapa genomes: a turnip, a rapid cycling and a Chinese cabbage.
Lin K, Zhang N, Severing EI, Nijveen H, Cheng F, Visser RG, Wang X, de Ridder D, Bonnema G., BMC Genomics 15(), 2014
PMID: 24684742
Two plastid DNA lineages--Rapa/Oleracea and Nigra--within the tribe Brassiceae can be best explained by reciprocal crosses at hexaploidy: evidence from divergence times of the plastid genomes and R-block genes of the A and B genomes of Brassica juncea.
Sharma S, Padmaja KL, Gupta V, Paritosh K, Pradhan AK, Pental D., PLoS One 9(4), 2014
PMID: 24691069
Meiotic gene evolution: can you teach a new dog new tricks?
Lloyd AH, Ranoux M, Vautrin S, Glover N, Fourment J, Charif D, Choulet F, Lassalle G, Marande W, Tran J, Granier F, Pingault L, Remay A, Marquis C, Belcram H, Chalhoub B, Feuillet C, Bergès H, Sourdille P, Jenczewski E., Mol Biol Evol 31(7), 2014
PMID: 24694832
In silico integration of quantitative trait loci for seed yield and yield-related traits in Brassica napus
Zhou QH, Fu DH, Mason AS, Zeng YJ, Zhao CX, Huang YJ., Mol Breed 33(4), 2014
PMID: IND500740618
SNP markers-based map construction and genome-wide linkage analysis in Brassica napus.
Raman H, Dalton-Morgan J, Diffey S, Raman R, Alamery S, Edwards D, Batley J., Plant Biotechnol J 12(7), 2014
PMID: 24698362
A chromosomal genomics approach to assess and validate the desi and kabuli draft chickpea genome assemblies.
Ruperao P, Chan CK, Azam S, Karafiátová M, Hayashi S, Cížková J, Saxena RK, Simková H, Song C, Vrána J, Chitikineni A, Visendi P, Gaur PM, Millán T, Singh KB, Taran B, Wang J, Wang J, Batley J, Doležel J, Varshney RK, Edwards D., Plant Biotechnol J 12(6), 2014
PMID: 24702794
Deep investigation of Arabidopsis thaliana junk DNA reveals a continuum between repetitive elements and genomic dark matter.
Maumus F, Quesneville H., PLoS One 9(4), 2014
PMID: 24709859
Center of Origin and Centers of Diversity in an Ancient Crop, Brassica rapa (Turnip Rape).
Guo Y, Chen S, Li Z, Cowling WA., J Hered 105(4), 2014
PMID: 24714366
The evolution of selfing from outcrossing ancestors in Brassicaceae: what have we learned from variation at the S-locus?
Vekemans X, Poux C, Goubet PM, Castric V., J Evol Biol 27(7), 2014
PMID: 24725152
Expression profiling reveals functionally redundant multiple-copy genes related to zinc, iron and cadmium responses in Brassica rapa.
Li J, Liu B, Cheng F, Wang X, Aarts MG, Wu J., New Phytol 203(1), 2014
PMID: 24738937
Genome-wide comparative analysis of 20 miniature inverted-repeat transposable element families in Brassica rapa and B. oleracea.
Sampath P, Murukarthick J, Izzah NK, Lee J, Choi HI, Shirasawa K, Choi BS, Liu S, Nou IS, Yang TJ., PLoS One 9(4), 2014
PMID: 24747717
The emerging biofuel crop Camelina sativa retains a highly undifferentiated hexaploid genome structure.
Kagale S, Koh C, Nixon J, Bollina V, Clarke WE, Tuteja R, Spillane C, Robinson SJ, Links MG, Clarke C, Higgins EE, Huebert T, Sharpe AG, Parkin IA., Nat Commun 5(), 2014
PMID: 24759634
A combined linkage and regional association mapping validation and fine mapping of two major pleiotropic QTLs for seed weight and silique length in rapeseed (Brassica napus L.).
Li N, Shi J, Wang X, Liu G, Wang H., BMC Plant Biol 14(), 2014
PMID: 24779415
Genomics and breeding of Brassicaceae crops.
Nishio T., Breed Sci 64(1), 2014
PMID: 24987285
Comparative genomics of Brassicaceae crops.
Sharma A, Li X, Lim YP., Breed Sci 64(1), 2014
PMID: 24987286
Glucosinolate metabolism, functionality and breeding for the improvement of Brassicaceae vegetables.
Ishida M, Hara M, Fukino N, Kakizaki T, Morimitsu Y., Breed Sci 64(1), 2014
PMID: 24987290
Recent progress in drought and salt tolerance studies in Brassica crops.
Zhang X, Lu G, Long W, Zou X, Li F, Nishio T., Breed Sci 64(1), 2014
PMID: 24987291
Distinct roles for SOS1 in the convergent evolution of salt tolerance in Eutrema salsugineum and Schrenkiella parvula.
Jarvis DE, Ryu CH, Beilstein MA, Schumaker KS., Mol Biol Evol 31(8), 2014
PMID: 24803640
Analysis of transposable elements in the genome of Asparagus officinalis from high coverage sequence data.
Li SF, Gao WJ, Zhao XP, Dong TY, Deng CL, Lu LD., PLoS One 9(5), 2014
PMID: 24810432
Functional identification of genes responsible for the biosynthesis of 1-methoxy-indol-3-ylmethyl-glucosinolate in Brassica rapa ssp. chinensis.
Wiesner M, Schreiner M, Zrenner R., BMC Plant Biol 14(), 2014
PMID: 24886080
Draft sequences of the radish (Raphanus sativus L.) genome.
Kitashiba H, Li F, Hirakawa H, Kawanabe T, Zou Z, Hasegawa Y, Tonosaki K, Shirasawa S, Fukushima A, Yokoi S, Takahata Y, Kakizaki T, Ishida M, Okamoto S, Sakamoto K, Shirasawa K, Tabata S, Nishio T., DNA Res 21(5), 2014
PMID: 24848699
Cadmium exposure and sulfate limitation reveal differences in the transcriptional control of three sulfate transporter (Sultr1;2) genes in Brassica juncea.
Lancilli C, Giacomini B, Lucchini G, Davidian JC, Cocucci M, Sacchi GA, Nocito FF., BMC Plant Biol 14(), 2014
PMID: 24884748
Genome triplication drove the diversification of Brassica plants.
Cheng F, Wu J, Wang X., Hortic Res 1(), 2014
PMID: 26504539
The Brassica oleracea genome reveals the asymmetrical evolution of polyploid genomes.
Liu S, Liu Y, Yang X, Tong C, Edwards D, Parkin IA, Zhao M, Ma J, Yu J, Huang S, Wang X, Wang J, Lu K, Fang Z, Bancroft I, Yang TJ, Hu Q, Wang X, Yue Z, Li H, Yang L, Wu J, Zhou Q, Wang W, King GJ, Pires JC, Lu C, Wu Z, Sampath P, Wang Z, Guo H, Pan S, Yang L, Min J, Zhang D, Jin D, Li W, Belcram H, Tu J, Guan M, Qi C, Du D, Li J, Jiang L, Batley J, Sharpe AG, Park BS, Ruperao P, Cheng F, Waminal NE, Huang Y, Dong C, Wang L, Li J, Hu Z, Zhuang M, Huang Y, Huang J, Shi J, Mei D, Liu J, Lee TH, Wang J, Jin H, Li Z, Li X, Zhang J, Xiao L, Zhou Y, Liu Z, Liu X, Qin R, Tang X, Liu W, Wang Y, Zhang Y, Lee J, Kim HH, Denoeud F, Xu X, Liang X, Hua W, Wang X, Wang J, Chalhoub B, Paterson AH., Nat Commun 5(), 2014
PMID: 24852848
RNA-seq based SNPs for mapping in Brassica juncea (AABB): synteny analysis between the two constituent genomes A (from B. rapa) and B (from B. nigra) shows highly divergent gene block arrangement and unique block fragmentation patterns.
Paritosh K, Gupta V, Yadava SK, Singh P, Pradhan AK, Pental D., BMC Genomics 15(), 2014
PMID: 24886001
SimRAD: an R package for simulation-based prediction of the number of loci expected in RADseq and similar genotyping by sequencing approaches.
Lepais O, Weir JT., Mol Ecol Resour 14(6), 2014
PMID: 24806844
Role of microRNAs in biotic and abiotic stress responses in crop plants.
Kumar R., Appl Biochem Biotechnol 174(1), 2014
PMID: 24869742
Extending the model of Arabidopsis telomere length and composition across Brassicaceae.
Nelson AD, Forsythe ES, Gan X, Tsiantis M, Beilstein MA., Chromosome Res 22(2), 2014
PMID: 24846723
Quantitative trait loci mapping of seed colour, hairy leaf, seedling anthocyanin, leaf chlorosis and days to flowering in F₂ population of Brassica rapa L.
Rahman M, Mamidi S, McClean P, Chevre A‐., Plant Breed 133(3), 2014
PMID: IND500902344
Cotyledon-Generated Auxin Is Required for Shade-Induced Hypocotyl Growth in Brassica rapa.
Procko C, Crenshaw CM, Ljung K, Noel JP, Chory J., Plant Physiol 165(3), 2014
PMID: 24891610
Genome-wide analysis of the distribution of AP2/ERF transcription factors reveals duplication and CBFs genes elucidate their potential function in Brassica oleracea.
Thamilarasan SK, Park JI, Jung HJ, Nou IS., BMC Genomics 15(), 2014
PMID: 24888752
Anthocyanin biosynthetic genes in Brassica rapa.
Guo N, Cheng F, Wu J, Liu B, Zheng S, Liang J, Wang X., BMC Genomics 15(), 2014
PMID: 24893600
The causes and molecular consequences of polyploidy in flowering plants.
Moghe GD, Shiu SH., Ann N Y Acad Sci 1320(), 2014
PMID: 24903334
Construction and analysis of high-density linkage map using high-throughput sequencing data.
Liu D, Ma C, Hong W, Huang L, Liu M, Liu H, Zeng H, Deng D, Xin H, Song J, Xu C, Sun X, Hou X, Wang X, Zheng H., PLoS One 9(6), 2014
PMID: 24905985
Delineation of plant caleosin residues critical for functional divergence, positive selection and coevolution.
Song W, Qin Y, Zhu Y, Yin G, Wu N, Li Y, Hu Y., BMC Evol Biol 14(), 2014
PMID: 24913827
Fine mapping of a dominant thermo-sensitive genic male sterility gene (BntsMs) in rapeseed (Brassica napus) with AFLP- and Brassica rapa-derived PCR markers.
Zeng X, Li W, Wu Y, Liu F, Luo J, Cao Y, Zhu L, Li Y, Li J, You Q, Wu G., Theor Appl Genet 127(8), 2014
PMID: 24913363
Mutations in single FT- and TFL1-paralogs of rapeseed (Brassica napus L.) and their impact on flowering time and yield components.
Guo Y, Hans H, Christian J, Molina C., Front Plant Sci 5(), 2014
PMID: 24987398
Homoeologous duplicated regions are involved in quantitative resistance of Brassica napus to stem canker.
Fopa Fomeju B, Falentin C, Lassalle G, Manzanares-Dauleux MJ, Delourme R., BMC Genomics 15(), 2014
PMID: 24948032
BrassicaTED - a public database for utilization of miniature transposable elements in Brassica species.
Murukarthick J, Sampath P, Lee SC, Choi BS, Senthil N, Liu S, Yang TJ., BMC Res Notes 7(), 2014
PMID: 24948109
Ancestral repeats have shaped epigenome and genome composition for millions of years in Arabidopsis thaliana.
Maumus F, Quesneville H., Nat Commun 5(), 2014
PMID: 24954583
Genome-wide analysis of the NADK gene family in plants.
Li WY, Wang X, Li R, Li WQ, Chen KM., PLoS One 9(6), 2014
PMID: 24968225
Genome-wide identification and characterization of aquaporin genes (AQPs) in Chinese cabbage (Brassica rapa ssp. pekinensis).
Tao P, Zhong X, Li B, Wang W, Yue Z, Lei J, Guo W, Huang X., Mol Genet Genomics 289(6), 2014
PMID: 24972664
Profiling of extensively diversified plant LINEs reveals distinct plant-specific subclades.
Heitkam T, Holtgräwe D, Dohm JC, Minoche AE, Himmelbauer H, Weisshaar B, Schmidt T., Plant J 79(3), 2014
PMID: 24862340
Intergenomic single nucleotide polymorphisms as a tool for bacterial artificial chromosome contig building of homoeologous Brassica napus regions.
Cao HX, Schmidt R., BMC Genomics 15(), 2014
PMID: 24996518
Microarray expression analysis of the main inflorescence in Brassica napus.
Huang Y, Shi J, Tao Z, Zhang L, Liu Q, Wang X, Yang Q, Liu G, Wang H., PLoS One 9(7), 2014
PMID: 25007212
The 2-C-methylerythritol 4-phosphate pathway in melon is regulated by specialized isoforms for the first and last steps.
Saladié M, Wright LP, Garcia-Mas J, Rodriguez-Concepcion M, Phillips MA., J Exp Bot 65(17), 2014
PMID: 25013119
Insights into the evolution and domain structure of Ataxin-2 proteins across eukaryotes.
Jiménez-López D, Guzmán P., BMC Res Notes 7(), 2014
PMID: 25027299
Polyploid evolution of the Brassicaceae during the Cenozoic era.
Kagale S, Robinson SJ, Nixon J, Xiao R, Huebert T, Condie J, Kessler D, Clarke WE, Edger PP, Links MG, Sharpe AG, Parkin IA., Plant Cell 26(7), 2014
PMID: 25035408
Functional innovations of three chronological mesohexaploid Brassica rapa genomes.
Kim J, Lee J, Choi JP, Park I, Yang K, Kim MK, Lee YH, Nou IS, Kim DS, Min SR, Park SU, Kim H., BMC Genomics 15(), 2014
PMID: 25033750
Quantitative trait loci for thermal time to flowering and photoperiod responsiveness discovered in summer annual-type Brassica napus L.
Nelson MN, Rajasekaran R, Smith A, Chen S, Beeck CP, Siddique KH, Cowling WA., PLoS One 9(7), 2014
PMID: 25061822
Transcriptome analysis of newly classified bZIP transcription factors of Brassica rapa in cold stress response.
Hwang I, Jung HJ, Park JI, Yang TJ, Nou IS., Genomics 104(3), 2014
PMID: 25075938
Genetical and comparative genomics of Brassica under altered Ca supply identifies Arabidopsis Ca-transporter orthologs.
Graham NS, Hammond JP, Lysenko A, Mayes S, O Lochlainn S, Blasco B, Bowen HC, Rawlings CJ, Rios JJ, Welham S, Carion PW, Dupuy LX, King GJ, White PJ, Broadley MR., Plant Cell 26(7), 2014
PMID: 25082855
Integrated syntenic and phylogenomic analyses reveal an ancient genome duplication in monocots.
Jiao Y, Li J, Tang H, Paterson AH., Plant Cell 26(7), 2014
PMID: 25082857
Identification and characterization of microRNAs in oilseed rape (Brassica napus) responsive to infection with the pathogenic fungus Verticillium longisporum using Brassica AA (Brassica rapa) and CC (Brassica oleracea) as reference genomes.
Shen D, Suhrkamp I, Wang Y, Liu S, Menkhaus J, Verreet JA, Fan L, Cai D., New Phytol 204(3), 2014
PMID: 25132374
Genetic characterisation and fine mapping of a chlorophyll-deficient mutant (BnaC.ygl) in Brassica napus
Zhu L, Zeng X, Chen Y, Yang Z, Qi L, Pu Y, Yi B, Wen J, Ma C, Shen J, Tu J, Fu T., Mol Breed 34(2), 2014
PMID: IND600800770
Characterization of dihydroflavonol 4-reductase (DFR) genes and their association with cold and freezing stress in Brassica rapa.
Ahmed NU, Park JI, Jung HJ, Yang TJ, Hur Y, Nou IS., Gene 550(1), 2014
PMID: 25108127
Polymorphism identification and improved genome annotation of Brassica rapa through Deep RNA sequencing.
Devisetty UK, Covington MF, Tat AV, Lekkala S, Maloof JN., G3 (Bethesda) 4(11), 2014
PMID: 25122667
Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
Chalhoub B, Denoeud F, Liu S, Parkin IA, Tang H, Wang X, Chiquet J, Belcram H, Tong C, Samans B, Corréa M, Da Silva C, Just J, Falentin C, Koh CS, Le Clainche I, Bernard M, Bento P, Noel B, Labadie K, Alberti A, Charles M, Arnaud D, Guo H, Daviaud C, Alamery S, Jabbari K, Zhao M, Edger PP, Chelaifa H, Tack D, Lassalle G, Mestiri I, Schnel N, Le Paslier MC, Fan G, Renault V, Bayer PE, Golicz AA, Manoli S, Lee TH, Thi VH, Chalabi S, Hu Q, Fan C, Tollenaere R, Lu Y, Battail C, Shen J, Sidebottom CH, Wang X, Canaguier A, Chauveau A, Bérard A, Deniot G, Guan M, Liu Z, Sun F, Lim YP, Lyons E, Town CD, Bancroft I, Wang X, Meng J, Ma J, Pires JC, King GJ, Brunel D, Delourme R, Renard M, Aury JM, Adams KL, Batley J, Snowdon RJ, Tost J, Edwards D, Zhou Y, Hua W, Sharpe AG, Paterson AH, Guan C, Wincker P., Science 345(6199), 2014
PMID: 25146293
A high-throughput SNP array in the amphidiploid species Brassica napus shows diversity in resistance genes.
Dalton-Morgan J, Hayward A, Alamery S, Tollenaere R, Mason AS, Campbell E, Patel D, Lorenc MT, Yi B, Long Y, Meng J, Raman R, Raman H, Lawley C, Edwards D, Batley J., Funct Integr Genomics 14(4), 2014
PMID: 25147024
Comparative genomics as a time machine: how relative gene dosage and metabolic requirements shaped the time-dependent resolution of yeast polyploidy.
Conant GC., Mol Biol Evol 31(12), 2014
PMID: 25158798
Capturing sequence variation among flowering-time regulatory gene homologs in the allopolyploid crop species Brassica napus.
Schiessl S, Samans B, Hüttel B, Reinhard R, Snowdon RJ., Front Plant Sci 5(), 2014
PMID: 25202314
Genome-wide transcriptome analysis of two contrasting Brassica rapa doubled haploid lines under cold-stresses using Br135K oligomeric chip.
Jung HJ, Dong X, Park JI, Thamilarasan SK, Lee SS, Kim YK, Lim YP, Nou IS, Hur Y., PLoS One 9(8), 2014
PMID: 25167163
Kazusa Marker DataBase: a database for genomics, genetics, and molecular breeding in plants.
Shirasawa K, Isobe S, Tabata S, Hirakawa H., Breed Sci 64(3), 2014
PMID: 25320561
Neofunctionalization of duplicated Tic40 genes caused a gain-of-function variation related to male fertility in Brassica oleracea lineages.
Dun X, Shen W, Hu K, Zhou Z, Xia S, Wen J, Yi B, Shen J, Ma C, Tu J, Fu T, Lagercrantz U., Plant Physiol 166(3), 2014
PMID: 25185122
Identification and characterization of microRNAs related to salt stress in broccoli, using high-throughput sequencing and bioinformatics analysis.
Tian Y, Tian Y, Luo X, Zhou T, Huang Z, Liu Y, Qiu Y, Hou B, Sun D, Deng H, Qian S, Yao K., BMC Plant Biol 14(), 2014
PMID: 25181943
Deep RNA-Seq to unlock the gene bank of floral development in Sinapis arvensis.
Liu J, Mei D, Li Y, Huang S, Hu Q., PLoS One 9(9), 2014
PMID: 25192023
Evolution, expression differentiation and interaction specificity of heterotrimeric G-protein subunit gene family in the mesohexaploid Brassica rapa.
Arya GC, Kumar R, Bisht NC., PLoS One 9(9), 2014
PMID: 25191920
Tetralocular ovary and high silique width in yellow sarson lines of Brassica rapa (subspecies trilocularis) are due to a mutation in Bra034340 gene, a homologue of CLAVATA3 in Arabidopsis.
Yadava SK, Paritosh K, Panjabi-Massand P, Gupta V, Chandra A, Sodhi YS, Pradhan AK, Pental D., Theor Appl Genet 127(11), 2014
PMID: 25205130
Analysis of global gene expression profiles to identify differentially expressed genes critical for embryo development in Brassica rapa.
Zhang Y, Peng L, Wu Y, Shen Y, Wu X, Wang J., Plant Mol Biol 86(4-5), 2014
PMID: 25214014
Regulatory network of secondary metabolism in Brassica rapa: insight into the glucosinolate pathway.
Pino Del Carpio D, Basnet RK, Arends D, Lin K, De Vos RC, Muth D, Kodde J, Boutilier K, Bucher J, Wang X, Jansen R, Bonnema G., PLoS One 9(9), 2014
PMID: 25222144
Differential expression and interaction specificity of the heterotrimeric G-protein family in Brassica nigra reveal their developmental- and condition-specific roles.
Kumar R, Arya GC, Bisht NC., Plant Cell Physiol 55(11), 2014
PMID: 25231958
Genome-wide identification and analysis of the growth-regulating factor family in Chinese cabbage (Brassica rapa L. ssp. pekinensis).
Wang F, Qiu N, Ding Q, Li J, Zhang Y, Li H, Gao J., BMC Genomics 15(), 2014
PMID: 25242257
Species- and genome-wide dissection of the shoot ionome in Brassica napus and its relationship to seedling development.
Bus A, Körber N, Parkin IA, Samans B, Snowdon RJ, Li J, Stich B., Front Plant Sci 5(), 2014
PMID: 25324847
Doubling down on genomes: Polyploidy and crop plants
Renny-Byfield S, Wendel JF., Am J Bot 101(10), 2014
PMID: IND601149192
BraLTP1, a lipid transfer protein gene involved in epicuticular wax deposition, cell proliferation and flower development in Brassica napus.
Liu F, Xiong X, Wu L, Fu D, Hayward A, Zeng X, Cao Y, Wu Y, Li Y, Wu G., PLoS One 9(10), 2014
PMID: 25314222
Gene families as soft cliques with backbones: Amborella contrasted with other flowering plants.
Zheng C, Kononenko A, Leebens-Mack J, Lyons E, Sankoff D., BMC Genomics 15 Suppl 6(), 2014
PMID: 25572777
A complex recombination pattern in the genome of allotetraploid Brassica napus as revealed by a high-density genetic map.
Cai G, Yang Q, Yi B, Fan C, Edwards D, Batley J, Zhou Y., PLoS One 9(10), 2014
PMID: 25356735
Evening expression of arabidopsis GIGANTEA is controlled by combinatorial interactions among evolutionarily conserved regulatory motifs.
Berns MC, Nordström K, Cremer F, Tóth R, Hartke M, Simon S, Klasen JR, Bürstel I, Coupland G., Plant Cell 26(10), 2014
PMID: 25361953
Loss and retention of resistance genes in five species of the Brassicaceae family.
Peele HM, Guan N, Fogelqvist J, Dixelius C., BMC Plant Biol 14(), 2014
PMID: 25365911
SimRAD: an R package for simulation‐based prediction of the number of loci expected in RADseq and similar genotyping by sequencing approaches
Lepais O, Weir JT., Mol Ecol Resour 14(6), 2014
PMID: IND600822935
A novel approach for multi-domain and multi-gene family identification provides insights into evolutionary dynamics of disease resistance genes in core eudicot plants.
Hofberger JA, Zhou B, Tang H, Jones JD, Schranz ME., BMC Genomics 15(), 2014
PMID: 25380807
Morphology, carbohydrate composition and vernalization response in a genetically diverse collection of Asian and European turnips (Brassica rapa subsp. rapa).
Zhang N, Zhao J, Lens F, de Visser J, Menamo T, Fang W, Xiao D, Bucher J, Basnet RK, Lin K, Cheng F, Wang X, Bonnema G., PLoS One 9(12), 2014
PMID: 25474111
Functional analysis of the Brassica napus L. phytoene synthase (PSY) gene family.
López-Emparán A, Quezada-Martinez D, Zúñiga-Bustos M, Cifuentes V, Iñiguez-Luy F, Federico ML., PLoS One 9(12), 2014
PMID: 25506829
Integration of a constraint-based metabolic model of Brassica napus developing seeds with (13)C-metabolic flux analysis.
Hay JO, Shi H, Heinzel N, Hebbelmann I, Rolletschek H, Schwender J., Front Plant Sci 5(), 2014
PMID: 25566296
Co-localisation of the blackleg resistance genes Rlm2 and LepR3 on Brassica napus chromosome A10.
Larkan NJ, Lydiate DJ, Yu F, Rimmer SR, Borhan MH., BMC Plant Biol 14(), 2014
PMID: 25551287
New insights into nested long terminal repeat retrotransposons in Brassica species.
Wei L, Xiao M, An Z, Ma B, Mason AS, Qian W, Li J, Fu D., Mol Plant 6(2), 2013
PMID: 22930733
Accessing complex crop genomes with next-generation sequencing.
Edwards D, Batley J, Snowdon RJ., Theor Appl Genet 126(1), 2013
PMID: 22948437
Genetic and physical mapping of flowering time loci in canola (Brassica napus L.).
Raman H, Raman R, Eckermann P, Coombes N, Manoli S, Zou X, Edwards D, Meng J, Prangnell R, Stiller J, Batley J, Luckett D, Wratten N, Dennis E., Theor Appl Genet 126(1), 2013
PMID: 22955939
Development of InDel markers for Brassica rapa based on whole-genome re-sequencing.
Liu B, Wang Y, Zhai W, Deng J, Wang H, Cui Y, Cheng F, Wang X, Wu J., Theor Appl Genet 126(1), 2013
PMID: 22972202
Comparative transcriptome analysis of tobacco (Nicotiana tabacum) leaves to identify aroma compound-related genes expressed in different cultivated regions.
Lei B, Zhao XH, Zhang K, Zhang J, Ren W, Ren Z, Chen Y, Zhao HN, Pan WJ, Chen W, Li HX, Deng WY, Ding FZ, Lu K., Mol Biol Rep 40(1), 2013
PMID: 23079704
Short read sequencing in studies of natural variation and adaptation.
Hunter B, Wright KM, Bomblies K., Curr Opin Plant Biol 16(1), 2013
PMID: 23177206
High-throughput root phenotyping screens identify genetic loci associated with root architectural traits in Brassica napus under contrasting phosphate availabilities.
Shi L, Shi T, Broadley MR, White PJ, Long Y, Meng J, Xu F, Hammond JP., Ann Bot 112(2), 2013
PMID: 23172414
The draft genome of watermelon (Citrullus lanatus) and resequencing of 20 diverse accessions.
Guo S, Zhang J, Sun H, Salse J, Lucas WJ, Zhang H, Zheng Y, Mao L, Ren Y, Wang Z, Min J, Guo X, Murat F, Ham BK, Zhang Z, Gao S, Huang M, Xu Y, Zhong S, Bombarely A, Mueller LA, Zhao H, He H, Zhang Y, Zhang Z, Huang S, Tan T, Pang E, Lin K, Hu Q, Kuang H, Ni P, Wang B, Liu J, Kou Q, Hou W, Zou X, Jiang J, Gong G, Klee K, Schoof H, Huang Y, Hu X, Dong S, Liang D, Wang J, Wu K, Xia Y, Zhao X, Zheng Z, Xing M, Liang X, Huang B, Lv T, Wang J, Yin Y, Yi H, Li R, Wu M, Levi A, Zhang X, Giovannoni JJ, Wang J, Li Y, Fei Z, Xu Y., Nat Genet 45(1), 2013
PMID: 23179023
Genetic analysis of hybrid seed formation ability of Brassica rapa in intergeneric crossings with Raphanus sativus.
Tonosaki K, Michiba K, Bang SW, Kitashiba H, Kaneko Y, Nishio T., Theor Appl Genet 126(3), 2013
PMID: 23203221
The putative phytocyanin genes in Chinese cabbage (Brassica rapa L.): genome-wide identification, classification and expression analysis.
Li J, Gao G, Zhang T, Wu X., Mol Genet Genomics 288(1-2), 2013
PMID: 23212439
The Brassica napus blackleg resistance gene LepR3 encodes a receptor-like protein triggered by the Leptosphaeria maculans effector AVRLM1.
Larkan NJ, Lydiate DJ, Parkin IA, Nelson MN, Epp DJ, Cowling WA, Rimmer SR, Borhan MH., New Phytol 197(2), 2013
PMID: 23206118
Quantitative trait loci mapping in Brassica rapa revealed the structural and functional conservation of genetic loci governing morphological and yield component traits in the A, B, and C subgenomes of Brassica species.
Li X, Ramchiary N, Dhandapani V, Choi SR, Hur Y, Nou IS, Yoon MK, Lim YP., DNA Res 20(1), 2013
PMID: 23223793
A triallelic genetic male sterility locus in Brassica napus: an integrative strategy for its physical mapping and possible local chromosome evolution around it.
Lu W, Liu J, Xin Q, Wan L, Hong D, Yang G., Ann Bot 111(2), 2013
PMID: 23243189
Locally duplicated ohnologs evolve faster than nonlocally duplicated ohnologs in Arabidopsis and rice.
Wang Y., Genome Biol Evol 5(2), 2013
PMID: 23362157
Identification of gene expression profile during fertilization in Brassica campestris subsp. chinensis.
Jiang J, Jiang J, Qiu L, Miao Y, Yao L, Cao J., Genome 56(1), 2013
PMID: 23379337
The fate of Arabidopsis thaliana homeologous CNSs and their motifs in the Paleohexaploid Brassica rapa.
Subramaniam S, Wang X, Freeling M, Pires JC., Genome Biol Evol 5(4), 2013
PMID: 23493633
FLOWERING LOCUS C in monocots and the tandem origin of angiosperm-specific MADS-box genes.
Ruelens P, de Maagd RA, Proost S, Theißen G, Geuten K, Kaufmann K., Nat Commun 4(), 2013
PMID: 23955420
Whole genome and tandem duplicate retention facilitated glucosinolate pathway diversification in the mustard family.
Hofberger JA, Lyons E, Edger PP, Chris Pires J, Eric Schranz M., Genome Biol Evol 5(11), 2013
PMID: 24171911
QTL analysis using SNP markers developed by next-generation sequencing for identification of candidate genes controlling 4-methylthio-3-butenyl glucosinolate contents in roots of radish, Raphanus sativus L.
Zou Z, Ishida M, Li F, Kakizaki T, Suzuki S, Kitashiba H, Nishio T., PLoS One 8(1), 2013
PMID: 23308250
A heterozygous moth genome provides insights into herbivory and detoxification.
You M, Yue Z, He W, Yang X, Yang G, Xie M, Zhan D, Baxter SW, Vasseur L, Gurr GM, Douglas CJ, Bai J, Wang P, Cui K, Huang S, Li X, Zhou Q, Wu Z, Chen Q, Liu C, Wang B, Li X, Xu X, Lu C, Hu M, Davey JW, Smith SM, Chen M, Xia X, Tang W, Ke F, Zheng D, Hu Y, Song F, You Y, Ma X, Peng L, Zheng Y, Liang Y, Chen Y, Yu L, Zhang Y, Liu Y, Li G, Fang L, Li J, Zhou X, Luo Y, Gou C, Wang J, Wang J, Yang H, Wang J., Nat Genet 45(2), 2013
PMID: 23313953
Transcriptome profile analysis of young floral buds of fertile and sterile plants from the self-pollinated offspring of the hybrid between novel restorer line NR1 and Nsa CMS line in Brassica napus.
Yan X, Dong C, Yu J, Liu W, Jiang C, Liu J, Hu Q, Fang X, Wei W., BMC Genomics 14(), 2013
PMID: 23324545
Dispersion and domestication shaped the genome of bread wheat.
Berkman PJ, Visendi P, Lee HC, Stiller J, Manoli S, Lorenc MT, Lai K, Batley J, Fleury D, Simková H, Kubaláková M, Weining S, Doležel J, Edwards D., Plant Biotechnol J 11(5), 2013
PMID: 23346876
QTL for yield traits and their association with functional genes in response to phosphorus deficiency in Brassica napus.
Shi T, Li R, Zhao Z, Ding G, Long Y, Meng J, Xu F, Shi L., PLoS One 8(1), 2013
PMID: 23382913
Evolution of the ONSEN retrotransposon family activated upon heat stress in Brassicaceae.
Ito H, Yoshida T, Tsukahara S, Kawabe A., Gene 518(2), 2013
PMID: 23370337
Identification and characterization of Crr1a, a gene for resistance to clubroot disease (Plasmodiophora brassicae Woronin) in Brassica rapa L.
Hatakeyama K, Suwabe K, Tomita RN, Kato T, Nunome T, Fukuoka H, Matsumoto S., PLoS One 8(1), 2013
PMID: 23382954
Use of digital gene expression to discriminate gene expression differences in early generations of resynthesized Brassica napus and its diploid progenitors.
Jiang J, Shao Y, Du K, Ran L, Fang X, Wang Y., BMC Genomics 14(), 2013
PMID: 23369045
Genome-wide identification and analysis of the B3 superfamily of transcription factors in Brassicaceae and major crop plants.
Peng FY, Weselake RJ., Theor Appl Genet 126(5), 2013
PMID: 23377560
Convergent gene loss following gene and genome duplications creates single-copy families in flowering plants.
De Smet R, Adams KL, Vandepoele K, Van Montagu MC, Maere S, Van de Peer Y., Proc Natl Acad Sci U S A 110(8), 2013
PMID: 23382190
Reprogramming the phenylpropanoid metabolism in seeds of oilseed rape by suppressing the orthologs of reduced epidermal fluorescence1.
Mittasch J, Böttcher C, Frolov A, Strack D, Milkowski C., Plant Physiol 161(4), 2013
PMID: 23424250
MicroRNAs and their putative targets in Brassica napus seed maturation.
Huang D, Koh C, Feurtado JA, Tsang EW, Cutler AJ., BMC Genomics 14(), 2013
PMID: 23448243
DNA marker applications to molecular genetics and genomics in tomato.
Shirasawa K, Hirakawa H., Breed Sci 63(1), 2013
PMID: 23641178
Fine mapping of the clubroot resistance gene CRb and development of a useful selectable marker in Brassica rapa.
Kato T, Hatakeyama K, Fukino N, Matsumoto S., Breed Sci 63(1), 2013
PMID: 23641188
Functional dissection of the PROPEP2 and PROPEP3 promoters reveals the importance of WRKY factors in mediating microbe-associated molecular pattern-induced expression.
Logemann E, Birkenbihl RP, Rawat V, Schneeberger K, Schmelzer E, Somssich IE., New Phytol 198(4), 2013
PMID: 23496690
The Reference Genome of the Halophytic Plant Eutrema salsugineum.
Yang R, Jarvis DE, Chen H, Beilstein MA, Grimwood J, Jenkins J, Shu S, Prochnik S, Xin M, Ma C, Schmutz J, Wing RA, Mitchell-Olds T, Schumaker KS, Wang X., Front Plant Sci 4(), 2013
PMID: 23518688
Homoeologous GSL-ELONG gene replacement for manipulation of aliphatic glucosinolates in Brassica rapa L. by marker assisted selection.
Hirani AH, Zelmer CD, McVetty PB, Daayf F, Li G., Front Plant Sci 4(), 2013
PMID: 23532458
Evolutionary dynamics of microsatellite distribution in plants: insight from the comparison of sequenced brassica, Arabidopsis and other angiosperm species.
Shi J, Huang S, Fu D, Yu J, Wang X, Hua W, Liu S, Liu G, Wang H., PLoS One 8(3), 2013
PMID: 23555856
Characterization of a new high copy Stowaway family MITE, BRAMI-1 in Brassica genome.
Sampath P, Lee SC, Lee J, Izzah NK, Choi BS, Jin M, Park BS, Yang TJ., BMC Plant Biol 13(), 2013
PMID: 23547712
Mapping quantitative trait loci for tissue culture response in VCS3M-DH population of Brassica rapa.
Seo MS, Jin M, Lee SS, Kwon SJ, Mun JH, Park BS, Visser RG, Bonnema G, Sohn SH., Plant Cell Rep 32(8), 2013
PMID: 23563522
Conserved microstructure of the Brassica B Genome of Brassica nigra in relation to homologous regions of Arabidopsis thaliana, B. rapa and B. oleracea.
Navabi ZK, Huebert T, Sharpe AG, O'Neill CM, Bancroft I, Parkin IA., BMC Genomics 14(), 2013
PMID: 23586706
Arguments for standardizing transposable element annotation in plant genomes.
Ragupathy R, You FM, Cloutier S., Trends Plant Sci 18(7), 2013
PMID: 23618952
A consensus map of rapeseed (Brassica napus L.) based on diversity array technology markers: applications in genetic dissection of qualitative and quantitative traits.
Raman H, Raman R, Kilian A, Detering F, Long Y, Edwards D, Parkin IA, Sharpe AG, Nelson MN, Larkan N, Zou J, Meng J, Aslam MN, Batley J, Cowling WA, Lydiate D., BMC Genomics 14(), 2013
PMID: 23617817
Phylogenetic Analysis of Brassica rapa MATH-Domain Proteins.
Zhao L, Huang Y, Hu Y, He X, Shen W, Liu C, Ruan Y., Curr Genomics 14(3), 2013
PMID: 24179444
Conservation and functional element discovery in 20 angiosperm plant genomes.
Hupalo D, Kern AD., Mol Biol Evol 30(7), 2013
PMID: 23640124
KNOX1 genes regulate lignin deposition and composition in monocots and dicots.
Townsley BT, Sinha NR, Kang J., Front Plant Sci 4(), 2013
PMID: 23653631
Reconstruction of the Brassica rapa ancestral genome.
Hofmann NR., Plant Cell 25(5), 2013
PMID: 23653469
Deciphering the diploid ancestral genome of the Mesohexaploid Brassica rapa.
Cheng F, Mandáková T, Wu J, Xie Q, Lysak MA, Wang X., Plant Cell 25(5), 2013
PMID: 23653472
Genome of the long-living sacred lotus (Nelumbo nucifera Gaertn.).
Ming R, VanBuren R, Liu Y, Yang M, Han Y, Li LT, Zhang Q, Kim MJ, Schatz MC, Campbell M, Li J, Bowers JE, Tang H, Lyons E, Ferguson AA, Narzisi G, Nelson DR, Blaby-Haas CE, Gschwend AR, Jiao Y, Jiao Y, Der JP, Zeng F, Han J, Min XJ, Hudson KA, Singh R, Grennan AK, Karpowicz SJ, Watling JR, Ito K, Robinson SA, Hudson ME, Yu Q, Mockler TC, Carroll A, Zheng Y, Sunkar R, Jia R, Chen N, Arro J, Wai CM, Wafula E, Spence A, Han Y, Xu L, Zhang J, Peery R, Haus MJ, Xiong W, Walsh JA, Wu J, Wang ML, Zhu YJ, Paull RE, Britt AB, Du C, Downie SR, Schuler MA, Michael TP, Long SP, Ort DR, Schopf JW, Gang DR, Jiang N, Yandell M, dePamphilis CW, Merchant SS, Paterson AH, Buchanan BB, Li S, Shen-Miller J., Genome Biol 14(5), 2013
PMID: 23663246
The genome of the mustard leaf beetle encodes two active xylanases originally acquired from bacteria through horizontal gene transfer.
Pauchet Y, Heckel DG., Proc Biol Sci 280(1763), 2013
PMID: 23698014
Differential accumulation of phenolic compounds and expression of related genes in black- and yellow-seeded Brassica napus.
Qu C, Fu F, Lu K, Zhang K, Wang R, Xu X, Wang M, Lu J, Wan H, Zhanglin T, Li J., J Exp Bot 64(10), 2013
PMID: 23698630
Detection and genotyping of restriction fragment associated polymorphisms in polyploid crops with a pseudo-reference sequence: a case study in allotetraploid Brassica napus.
Chen X, Li X, Zhang B, Xu J, Wu Z, Wang B, Li H, Younas M, Huang L, Luo Y, Wu J, Hu S, Liu K., BMC Genomics 14(), 2013
PMID: 23706002
Construction of a chromosome-assigned, sequence-tagged linkage map for the radish, Raphanus sativus L. and QTL analysis of morphological traits.
Hashida T, Nakatsuji R, Budahn H, Schrader O, Peterka H, Fujimura T, Kubo N, Hirai M., Breed Sci 63(2), 2013
PMID: 23853517
Genomics reveals new landscapes for crop improvement.
Bevan MW, Uauy C., Genome Biol 14(6), 2013
PMID: 23796126
Turning over a new leaf in plant genomics.
Caccamo M, Grotewold E., Genome Biol 14(6), 2013
PMID: 23805981
An atlas of over 90,000 conserved noncoding sequences provides insight into crucifer regulatory regions.
Haudry A, Platts AE, Vello E, Hoen DR, Leclercq M, Williamson RJ, Forczek E, Joly-Lopez Z, Steffen JG, Hazzouri KM, Dewar K, Stinchcombe JR, Schoen DJ, Wang X, Schmutz J, Town CD, Edger PP, Pires JC, Schumaker KS, Jarvis DE, Mandáková T, Lysak MA, van den Bergh E, Schranz ME, Harrison PM, Moses AM, Bureau TE, Wright SI, Blanchette M., Nat Genet 45(8), 2013
PMID: 23817568
RNA-seq based SNPs in some agronomically important oleiferous lines of Brassica rapa and their use for genome-wide linkage mapping and specific-region fine mapping.
Paritosh K, Yadava SK, Gupta V, Panjabi-Massand P, Sodhi YS, Pradhan AK, Pental D., BMC Genomics 14(), 2013
PMID: 23837684
Genetics, genomics and breeding of oilseed brassicas.
Heslop-Harrison P., Ann Bot 112(3), 2013
PMID: PMC3718208
Tracing the transcriptomic changes in synthetic Trigenomic allohexaploids of Brassica using an RNA-Seq approach.
Zhao Q, Zou J, Meng J, Mei S, Wang J., PLoS One 8(7), 2013
PMID: 23874799
Comparative mapping of Raphanus sativus genome using Brassica markers and quantitative trait loci analysis for the Fusarium wilt resistance trait.
Yu X, Choi SR, Ramchiary N, Miao X, Lee SH, Sun HJ, Kim S, Ahn CH, Lim YP., Theor Appl Genet 126(10), 2013
PMID: 23864230
Induced production of 1-methoxy-indol-3-ylmethyl glucosinolate by jasmonic acid and methyl jasmonate in sprouts and leaves of pak choi (Brassica rapa ssp. chinensis).
Wiesner M, Hanschen FS, Schreiner M, Glatt H, Zrenner R., Int J Mol Sci 14(7), 2013
PMID: 23873294
Plant Defensin type 1 (PDF1): protein promiscuity and expression variation within the Arabidopsis genus shed light on zinc tolerance acquisition in Arabidopsis halleri.
Shahzad Z, Ranwez V, Fizames C, Marquès L, Le Martret B, Alassimone J, Godé C, Lacombe E, Castillo T, Saumitou-Laprade P, Berthomieu P, Gosti F., New Phytol 200(3), 2013
PMID: 23865749
Genetic analysis of health-related secondary metabolites in a Brassica rapa recombinant inbred line population.
Bagheri H, El-Soda M, Kim HK, Fritsche S, Jung C, Aarts MG., Int J Mol Sci 14(8), 2013
PMID: 23892600
CrusView: a Java-based visualization platform for comparative genomics analyses in Brassicaceae species.
Chen H, Wang X., Plant Physiol 163(1), 2013
PMID: 23898041
Novel bioresources for studies of Brassica oleracea: identification of a kale MYB transcription factor responsible for glucosinolate production.
Araki R, Hasumi A, Nishizawa OI, Sasaki K, Kuwahara A, Sawada Y, Totoki Y, Toyoda A, Sakaki Y, Li Y, Saito K, Ogawa T, Hirai MY., Plant Biotechnol J 11(8), 2013
PMID: 23910994
De novo assembly of the pennycress (Thlaspi arvense) transcriptome provides tools for the development of a winter cover crop and biodiesel feedstock.
Dorn KM, Fankhauser JD, Wyse DL, Marks MD., Plant J 75(6), 2013
PMID: 23786378
Genome-wide analysis of the AP2/ERF transcription factor superfamily in Chinese cabbage (Brassica rapa ssp. pekinensis).
Song X, Li Y, Hou X., BMC Genomics 14(), 2013
PMID: 23972083
Shifts in the evolutionary rate and intensity of purifying selection between two Brassica genomes revealed by analyses of orthologous transposons and relics of a whole genome triplication.
Zhao M, Du J, Lin F, Tong C, Yu J, Huang S, Wang X, Liu S, Ma J., Plant J 76(2), 2013
PMID: 23869625
The Tarenaya hassleriana genome provides insight into reproductive trait and genome evolution of crucifers.
Cheng S, van den Bergh E, Zeng P, Zhong X, Xu J, Liu X, Hofberger J, de Bruijn S, Bhide AS, Kuelahoglu C, Bian C, Chen J, Fan G, Kaufmann K, Hall JC, Becker A, Bräutigam A, Weber AP, Shi C, Zheng Z, Li W, Lv M, Tao Y, Wang J, Zou H, Quan Z, Hibberd JM, Zhang G, Zhu XG, Xu X, Schranz ME., Plant Cell 25(8), 2013
PMID: 23983221
Divergent evolutionary and expression patterns between lineage specific new duplicate genes and their parental paralogs in Arabidopsis thaliana.
Wang J, Marowsky NC, Fan C., PLoS One 8(8), 2013
PMID: 24009676
Identification, expression, and comparative genomic analysis of the IPT and CKX gene families in Chinese cabbage (Brassica rapa ssp. pekinensis).
Liu Z, Lv Y, Zhang M, Liu Y, Kong L, Zou M, Lu G, Cao J, Yu X., BMC Genomics 14(), 2013
PMID: 24001366
Development of a novel codominant molecular marker for chili veinal mottle virus resistance in Capsicum annuum L.
Lee HR, An HJ, You YG, Lee J, Kim HJ, Kang BC, Harn CH., Euphytica 193(2), 2013
PMID: IND500686886
β-Amino-n-butyric Acid Regulates Seedling Growth and Disease Resistance of Kimchi Cabbage.
Kim YC, Kim YH, Lee YH, Lee SW, Chae YS, Kang HK, Yun BW, Hong JK., Plant Pathol J 29(3), 2013
PMID: 25288957
Genome-wide characterization of the Pectate Lyase-like (PLL) genes in Brassica rapa.
Jiang J, Yao L, Miao Y, Cao J., Mol Genet Genomics 288(11), 2013
PMID: 23999922
Importance of gene duplication in the evolution of genomic imprinting revealed by molecular evolutionary analysis of the type I MADS-box gene family in Arabidopsis species.
Yoshida T, Kawabe A., PLoS One 8(9), 2013
PMID: 24039992
Screening of a Brassica napus bacterial artificial chromosome library using highly parallel single nucleotide polymorphism assays.
Cao HX, Schmidt R., BMC Genomics 14(), 2013
PMID: 24010766
Functional analysis and tissue-differential expression of four FAD2 genes in amphidiploid Brassica napus derived from Brassica rapa and Brassica oleracea.
Lee KR, In Sohn S, Jung JH, Kim SH, Roh KH, Kim JB, Suh MC, Kim HU., Gene 531(2), 2013
PMID: 24029080
Comprehensive analysis of genic male sterility-related genes in Brassica rapa using a newly developed Br300K oligomeric chip.
Dong X, Feng H, Xu M, Lee J, Kim YK, Lim YP, Piao Z, Park YD, Ma H, Hur Y., PLoS One 8(9), 2013
PMID: 24039743
New insights into helitron transposable elements in the mesopolyploid species Brassica rapa.
Fu D, Wei L, Xiao M, Hayward A., Gene 532(2), 2013
PMID: 24055723
Cell type-specific transcriptome of Brassicaceae stigmatic papilla cells from a combination of laser microdissection and RNA sequencing.
Osaka M, Matsuda T, Sakazono S, Masuko-Suzuki H, Maeda S, Sewaki M, Sone M, Takahashi H, Nakazono M, Iwano M, Takayama S, Shimizu KK, Yano K, Lim YP, Suzuki G, Suwabe K, Watanabe M., Plant Cell Physiol 54(11), 2013
PMID: 24058146
Whole genome duplication events in plant evolution reconstructed and predicted using myosin motor proteins.
Mühlhausen S, Kollmar M., BMC Evol Biol 13(), 2013
PMID: 24053117
Applications and challenges of next-generation sequencing in Brassica species.
Wei L, Xiao M, Hayward A, Fu D., Planta 238(6), 2013
PMID: 24062086
The Brassica rapa FLC homologue FLC2 is a key regulator of flowering time, identified through transcriptional co-expression networks.
Xiao D, Zhao JJ, Hou XL, Basnet RK, Carpio DP, Zhang NW, Bucher J, Lin K, Cheng F, Wang XW, Bonnema G., J Exp Bot 64(14), 2013
PMID: 24078668
Pol IV-Dependent siRNA Production is Reduced in Brassica rapa.
Huang Y, Kendall T, Mosher RA., Biology (Basel) 2(4), 2013
PMID: 24833221
Comprehensive analysis of RNA-seq data reveals the complexity of the transcriptome in Brassica rapa.
Tong C, Wang X, Yu J, Wu J, Li W, Huang J, Dong C, Hua W, Liu S., BMC Genomics 14(), 2013
PMID: 24098974
Identification of genome-wide single nucleotide polymorphisms in allopolyploid crop Brassica napus.
Huang S, Deng L, Guan M, Li J, Lu K, Wang H, Fu D, Mason AS, Liu S, Hua W., BMC Genomics 14(), 2013
PMID: 24138473
Comprehensive analysis of expressed sequence tags from cultivated and wild radish (Raphanus spp.).
Shen D, Sun H, Huang M, Zheng Y, Qiu Y, Li X, Fei Z., BMC Genomics 14(), 2013
PMID: 24144082
QTL mapping of leafy heads by genome resequencing in the RIL population of Brassica rapa.
Yu X, Wang H, Zhong W, Bai J, Liu P, He Y., PLoS One 8(10), 2013
PMID: 24204591
Arabidopsis thaliana AHL family modulates hypocotyl growth redundantly by interacting with each other via the PPC/DUF296 domain.
Zhao J, Favero DS, Peng H, Neff MM., Proc Natl Acad Sci U S A 110(48), 2013
PMID: 24218605
Transcriptome analysis of leaf tissue of Raphanus sativus by RNA sequencing.
Zhang L, Jia H, Yin Y, Wu G, Xia H, Wang X, Fu C, Li M, Wu J., PLoS One 8(11), 2013
PMID: 24265813
Identification of putative quantitative trait loci associated with a flavonoid related to resistance to cabbage seedpod weevil (Ceutorhynchus obstrictus) in canola derived from an intergeneric cross, Sinapis alba × Brassica napus.
Lee RW, Malchev IT, Rajcan I, Kott LS., Theor Appl Genet (), 2013
PMID: 24231920
Characterization and co-expression analysis of WRKY orthologs involved in responses to multiple abiotic stresses in Pak-choi (Brassica campestris ssp. chinensis).
Tang J, Wang F, Wang Z, Huang Z, Xiong A, Hou X., BMC Plant Biol 13(), 2013
PMID: 24267479
Genome-wide analysis of coordinated transcript abundance during seed development in different Brassica rapa morphotypes.
Basnet RK, Moreno-Pachon N, Lin K, Bucher J, Visser RG, Maliepaard C, Bonnema G., BMC Genomics 14(), 2013
PMID: 24289287
Integrated genomics and molecular breeding approaches for dissecting the complex quantitative traits in crop plants.
Kujur A, Saxena MS, Bajaj D, Laxmi, Parida SK., J Biosci 38(5), 2013
PMID: 24296899
Assembly and validation of the genome of the nonmodel basal angiosperm Amborella.
Chamala S, Chanderbali AS, Der JP, Lan T, Walts B, Albert VA, dePamphilis CW, Leebens-Mack J, Rounsley S, Schuster SC, Wing RA, Xiao N, Moore R, Soltis PS, Soltis DE, Barbazuk WB., Science 342(6165), 2013
PMID: 24357320
Fine mapping and identification of candidate Br-or gene controlling orange head of Chinese cabbage (Brassica rapa L. ssp. pekinensis)
Zhang J, Li H, Zhang M, Hui M, Wang Q, Li L, Zhang L., Mol Breed 32(4), 2013
PMID: IND500706884
Global analysis of cis-natural antisense transcripts and their heat-responsive nat-siRNAs in Brassica rapa.
Yu X, Yang J, Li X, Liu X, Sun C, Wu F, He Y., BMC Plant Biol 13(), 2013
PMID: 24320882
A novel dominant glossy mutation causes suppression of wax biosynthesis pathway and deficiency of cuticular wax in Brassica napus.
Pu Y, Gao J, Guo Y, Liu T, Zhu L, Xu P, Yi B, Wen J, Tu J, Ma C, Fu T, Zou J, Shen J., BMC Plant Biol 13(), 2013
PMID: 24330756
A high-density SNP map for accurate mapping of seed fibre QTL in Brassica napus L.
Liu L, Qu C, Wittkop B, Yi B, Xiao Y, He Y, Snowdon RJ, Li J., PLoS One 8(12), 2013
PMID: 24386142
Genome-wide identification, phylogeny, evolution and expression patterns of AP2/ERF genes and cytokinin response factors in Brassica rapa ssp. pekinensis.
Liu Z, Kong L, Zhang M, Lv Y, Liu Y, Zou M, Lu G, Cao J, Yu X., PLoS One 8(12), 2013
PMID: 24386201
Bioinformatics tools and databases for analysis of next-generation sequence data.
Lee HC, Lai K, Lorenc MT, Imelfort M, Duran C, Edwards D., Brief Funct Genomics 11(1), 2012
PMID: 22184335
Genome-wide metabolic network reconstruction of the picoalga Ostreococcus.
Krumholz EW, Yang H, Weisenhorn P, Henry CS, Libourel IG., J Exp Bot 63(6), 2012
PMID: 22207618
Order in the playground: Formation of plant gene clusters in dynamic chromosomal regions.
Field B, Osbourn A., Mob Genet Elements 2(1), 2012
PMID: 22754752
Inferring the Brassica rapa Interactome Using Protein-Protein Interaction Data from Arabidopsis thaliana.
Yang J, Osman K, Iqbal M, Stekel DJ, Luo Z, Armstrong SJ, Franklin FC., Front Plant Sci 3(), 2012
PMID: 23293649
Validation of reference genes for real-time quantitative PCR normalisation in non-heading Chinese cabbage
Xiao D, Zhang NW, Zhao JJ, Bonnema G, Hou XL., Funct Plant Biol 39(4), 2012
PMID: IND44675925
A genome triplication associated with early diversification of the core eudicots.
Jiao Y, Leebens-Mack J, Ayyampalayam S, Bowers JE, McKain MR, McNeal J, Rolf M, Ruzicka DR, Wafula E, Wickett NJ, Wu X, Zhang Y, Wang J, Wang J, Zhang Y, Carpenter EJ, Deyholos MK, Kutchan TM, Chanderbali AS, Soltis PS, Stevenson DW, McCombie R, Pires JC, Wong GK, Soltis DE, Depamphilis CW., Genome Biol 13(1), 2012
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Altered patterns of fractionation and exon deletions in Brassica rapa support a two-step model of paleohexaploidy.
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