Crystal structure of the alkylsulfatase AtsK: Insights into the catalytic mechanism of the Fe(II) alpha-ketoglutarate-dependent dioxygenase superfamily

Muller I, Kahnert A, Pape T, Sheldrick GM, Meyer-Klaucke W, Dierks T, Kertesz M, Uson I (2004)
BIOCHEMISTRY 43(11): 3075-3088.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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Autor*in
Muller, I; Kahnert, A; Pape, T; Sheldrick, GM; Meyer-Klaucke, W; Dierks, ThomasUniBi; Kertesz, M; Uson, I
Abstract / Bemerkung
The alkylsulfatase AtsK from Pseudomonas putida S-313 belongs to the widespread and versatile non-heme iron(II) alpha-ketoglutarate-dependent dioxygenase superfamily and catalyzes the oxygenolytic cleavage of a variety of different alkyl sulfate esters to the corresponding aldehyde and sulfate. The enzyme is only expressed under sulfur starvation conditions, providing a selective advantage for bacterial growth in soils and rhizosphere. Here we describe the crystal structure of AtsK in the apo form and in three complexes: with the cosubstrate alpha-ketoglutarate, with alpha-ketoglutarate and iron, and finally with alpha-ketoglutarate, iron, and an alkyl sulfate ester used as substrate in catalytic studies. The overall fold of the enzyme is closely related to that of the taurine/alpha-ketoglutarate dioxygenase TauD and is similar to the fold observed for other members of the enzyme superfamily. From comparison of these structures with the crystal structure of AtsK and its complexes, we propose a general mechanism for the catalytic cycle of the alpha-ketoglutarate-dependent dioxygenase superfamily.
Erscheinungsjahr
2004
Zeitschriftentitel
BIOCHEMISTRY
Band
43
Ausgabe
11
Seite(n)
3075-3088
ISSN
0006-2960
eISSN
1520-4995
Page URI
https://pub.uni-bielefeld.de/record/2350737

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Muller I, Kahnert A, Pape T, et al. Crystal structure of the alkylsulfatase AtsK: Insights into the catalytic mechanism of the Fe(II) alpha-ketoglutarate-dependent dioxygenase superfamily. BIOCHEMISTRY. 2004;43(11):3075-3088.
Muller, I., Kahnert, A., Pape, T., Sheldrick, G. M., Meyer-Klaucke, W., Dierks, T., Kertesz, M., et al. (2004). Crystal structure of the alkylsulfatase AtsK: Insights into the catalytic mechanism of the Fe(II) alpha-ketoglutarate-dependent dioxygenase superfamily. BIOCHEMISTRY, 43(11), 3075-3088. https://doi.org/10.1021/bi035752v
Muller, I, Kahnert, A, Pape, T, Sheldrick, GM, Meyer-Klaucke, W, Dierks, Thomas, Kertesz, M, and Uson, I. 2004. “Crystal structure of the alkylsulfatase AtsK: Insights into the catalytic mechanism of the Fe(II) alpha-ketoglutarate-dependent dioxygenase superfamily”. BIOCHEMISTRY 43 (11): 3075-3088.
Muller, I., Kahnert, A., Pape, T., Sheldrick, G. M., Meyer-Klaucke, W., Dierks, T., Kertesz, M., and Uson, I. (2004). Crystal structure of the alkylsulfatase AtsK: Insights into the catalytic mechanism of the Fe(II) alpha-ketoglutarate-dependent dioxygenase superfamily. BIOCHEMISTRY 43, 3075-3088.
Muller, I., et al., 2004. Crystal structure of the alkylsulfatase AtsK: Insights into the catalytic mechanism of the Fe(II) alpha-ketoglutarate-dependent dioxygenase superfamily. BIOCHEMISTRY, 43(11), p 3075-3088.
I. Muller, et al., “Crystal structure of the alkylsulfatase AtsK: Insights into the catalytic mechanism of the Fe(II) alpha-ketoglutarate-dependent dioxygenase superfamily”, BIOCHEMISTRY, vol. 43, 2004, pp. 3075-3088.
Muller, I., Kahnert, A., Pape, T., Sheldrick, G.M., Meyer-Klaucke, W., Dierks, T., Kertesz, M., Uson, I.: Crystal structure of the alkylsulfatase AtsK: Insights into the catalytic mechanism of the Fe(II) alpha-ketoglutarate-dependent dioxygenase superfamily. BIOCHEMISTRY. 43, 3075-3088 (2004).
Muller, I, Kahnert, A, Pape, T, Sheldrick, GM, Meyer-Klaucke, W, Dierks, Thomas, Kertesz, M, and Uson, I. “Crystal structure of the alkylsulfatase AtsK: Insights into the catalytic mechanism of the Fe(II) alpha-ketoglutarate-dependent dioxygenase superfamily”. BIOCHEMISTRY 43.11 (2004): 3075-3088.

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van Loo B, Schober M, Valkov E, Heberlein M, Bornberg-Bauer E, Faber K, Hyvönen M, Hollfelder F., J Mol Biol 430(7), 2018
PMID: 29458126
Catalytic mechanism and molecular engineering of quinolone biosynthesis in dioxygenase AsqJ.
Mader SL, Bräuer A, Groll M, Kaila VRI., Nat Commun 9(1), 2018
PMID: 29563492
Amazing Diversity in Biochemical Roles of Fe(II)/2-Oxoglutarate Oxygenases.
Herr CQ, Hausinger RP., Trends Biochem Sci 43(7), 2018
PMID: 29709390
Recent examples of α-ketoglutarate-dependent mononuclear non-haem iron enzymes in natural product biosyntheses.
Gao SS, Naowarojna N, Cheng R, Liu X, Liu P., Nat Prod Rep 35(8), 2018
PMID: 29932179
Evidence that oxidative dephosphorylation by the nonheme Fe(II), α-ketoglutarate:UMP oxygenase occurs by stereospecific hydroxylation.
Goswami A, Liu X, Cai W, Wyche TP, Bugni TS, Meurillon M, Peyrottes S, Perigaud C, Nonaka K, Rohr J, Van Lanen SG., FEBS Lett 591(3), 2017
PMID: 28074470
Crystal structure of thermostable alkylsulfatase SdsAP from Pseudomonas sp. S9.
Sun L, Chen P, Su Y, Cai Z, Ruan L, Xu X, Wu Y., Biosci Rep 37(3), 2017
PMID: 28442601
The eukaryotic enzyme Bds1 is an alkyl but not an aryl sulfohydrolase.
Waddell GL, Gilmer CR, Taylor NG, Reveral JRS, Forconi M, Fox JL., Biochem Biophys Res Commun 491(2), 2017
PMID: 28720494
Structure of the Dioxygenase AsqJ: Mechanistic Insights into a One-Pot Multistep Quinolone Antibiotic Biosynthesis.
Bräuer A, Beck P, Hintermann L, Groll M., Angew Chem Int Ed Engl 55(1), 2016
PMID: 26553478
Structural analysis of a phosphonate hydroxylase with an access tunnel at the back of the active site.
Li C, Junaid M, Almuqri EA, Hao S, Zhang H., Acta Crystallogr F Struct Biol Commun 72(pt 5), 2016
PMID: 27139827
Matching the Diversity of Sulfated Biomolecules: Creation of a Classification Database for Sulfatases Reflecting Their Substrate Specificity.
Barbeyron T, Brillet-Guéguen L, Carré W, Carrière C, Caron C, Czjzek M, Hoebeke M, Michel G., PLoS One 11(10), 2016
PMID: 27749924
Microbial alkyl- and aryl-sulfatases: mechanism, occurrence, screening and stereoselectivities.
Toesch M, Schober M, Faber K., Appl Microbiol Biotechnol 98(4), 2014
PMID: 24352732
Controlling carrageenan structure using a novel formylglycine-dependent sulfatase, an endo-4S-iota-carrageenan sulfatase.
Préchoux A, Genicot S, Rogniaux H, Helbert W., Mar Biotechnol (NY) 15(3), 2013
PMID: 23011004
Mycobacterium tuberculosis Rv3406 is a type II alkyl sulfatase capable of sulfate scavenging.
Sogi KM, Gartner ZJ, Breidenbach MA, Appel MJ, Schelle MW, Bertozzi CR., PLoS One 8(6), 2013
PMID: 23762287
Inverting hydrolases and their use in enantioconvergent biotransformations.
Schober M, Faber K., Trends Biotechnol 31(8), 2013
PMID: 23809848
Sulfatase-activated fluorophores for rapid discrimination of mycobacterial species and strains.
Beatty KE, Williams M, Carlson BL, Swarts BM, Warren RM, van Helden PD, Bertozzi CR., Proc Natl Acad Sci U S A 110(32), 2013
PMID: 23878250
The Fe(II)/α-ketoglutarate-dependent taurine dioxygenases from Pseudomonas putida and Escherichia coli are tetramers.
Knauer SH, Hartl-Spiegelhauer O, Schwarzinger S, Hänzelmann P, Dobbek H., FEBS J 279(5), 2012
PMID: 22221834
Inverse solvent isotope effects demonstrate slow aquo release from hypoxia inducible factor-prolyl hydroxylase (PHD2).
Flagg SC, Giri N, Pektas S, Maroney MJ, Knapp MJ., Biochemistry 51(33), 2012
PMID: 22747465
Structure and mechanism of an inverting alkylsulfatase from Pseudomonas sp. DSM6611 specific for secondary alkyl sulfates.
Knaus T, Schober M, Kepplinger B, Faccinelli M, Pitzer J, Faber K, Macheroux P, Wagner U., FEBS J 279(23), 2012
PMID: 23061549
Characterization of LipL as a non-heme, Fe(II)-dependent α-ketoglutarate:UMP dioxygenase that generates uridine-5'-aldehyde during A-90289 biosynthesis.
Yang Z, Chi X, Funabashi M, Baba S, Nonaka K, Pahari P, Unrine J, Jacobsen JM, Elliott GI, Rohr J, Van Lanen SG., J Biol Chem 286(10), 2011
PMID: 21216959
A stereoselective inverting sec-alkylsulfatase for the deracemization of sec-alcohols.
Schober M, Gadler P, Knaus T, Kayer H, Birner-Grünberger R, Gülly C, Macheroux P, Wagner U, Faber K., Org Lett 13(16), 2011
PMID: 21770430
Crystal structure of Tpa1 from Saccharomyces cerevisiae, a component of the messenger ribonucleoprotein complex.
Kim HS, Kim HL, Kim KH, Kim DJ, Lee SJ, Yoon JY, Yoon HJ, Lee HY, Park SB, Kim SJ, Lee JY, Suh SW., Nucleic Acids Res 38(6), 2010
PMID: 20040577
Anaerobic sulfatase-maturating enzyme--a mechanistic link with glycyl radical-activating enzymes?
Benjdia A, Subramanian S, Leprince J, Vaudry H, Johnson MK, Berteau O., FEBS J 277(8), 2010
PMID: 20218986
Conformational switch triggered by alpha-ketoglutarate in a halogenase of curacin A biosynthesis.
Khare D, Wang B, Gu L, Razelun J, Sherman DH, Gerwick WH, Håkansson K, Smith JL., Proc Natl Acad Sci U S A 107(32), 2010
PMID: 20660778
Structural basis for the erythro-stereospecificity of the L-arginine oxygenase VioC in viomycin biosynthesis.
Helmetag V, Samel SA, Thomas MG, Marahiel MA, Essen LO., FEBS J 276(13), 2009
PMID: 19490124
We two alone will sing: the two-substrate alpha-keto acid-dependent oxygenases.
He P, Moran GR., Curr Opin Chem Biol 13(4), 2009
PMID: 19625206
Function and structure of a prokaryotic formylglycine-generating enzyme.
Carlson BL, Ballister ER, Skordalakes E, King DS, Breidenbach MA, Gilmore SA, Berger JM, Bertozzi CR., J Biol Chem 283(29), 2008
PMID: 18390551
In vitro characterization of AtsB, a radical SAM formylglycine-generating enzyme that contains three [4Fe-4S] clusters.
Grove TL, Lee KH, St Clair J, Krebs C, Booker SJ., Biochemistry 47(28), 2008
PMID: 18558715
The diverse and pervasive chemistries of the alpha-keto acid dependent enzymes.
Purpero V, Moran GR., J Biol Inorg Chem 12(5), 2007
PMID: 17431691
Non-heme iron through the three domains of life.
Andreini C, Banci L, Bertini I, Elmi S, Rosato A., Proteins 67(2), 2007
PMID: 17286284
Crystal structures of catalytic complexes of the oxidative DNA/RNA repair enzyme AlkB.
Yu B, Edstrom WC, Benach J, Hamuro Y, Weber PC, Gibney BR, Hunt JF., Nature 439(7078), 2006
PMID: 16482161
Structural studies on 2-oxoglutarate oxygenases and related double-stranded beta-helix fold proteins.
Clifton IJ, McDonough MA, Ehrismann D, Kershaw NJ, Granatino N, Schofield CJ., J Inorg Biochem 100(4), 2006
PMID: 16513174
The crystal structure of SdsA1, an alkylsulfatase from Pseudomonas aeruginosa, defines a third class of sulfatases.
Hagelueken G, Adams TM, Wiehlmann L, Widow U, Kolmar H, Tümmler B, Heinz DW, Schubert WD., Proc Natl Acad Sci U S A 103(20), 2006
PMID: 16684886
Structural basis for the enantiospecificities of R- and S-specific phenoxypropionate/alpha-ketoglutarate dioxygenases.
Müller TA, Zavodszky MI, Feig M, Kuhn LA, Hausinger RP., Protein Sci 15(6), 2006
PMID: 16731970
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