Microbial nitrate respiration - Genes, enzymes and environmental distribution
Kraft B, Strous M, Tegetmeyer H (2011)
Journal of Biotechnology 155(1): 104-117.
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Abstract / Bemerkung
Nitrate is a key node in the network of the assimilatory and respiratory nitrogen pathways. As one of the 'fixed' forms of nitrogen, nitrate plays an essential role in both nature and industry. For bacteria, it is both a nitrogen source and an electron acceptor. In agriculture and wastewater treatment, nitrate respiration by microorganisms is an important issue with respect to economics, greenhouse gas emission and public health. Several microbial processes compete for nitrate: denitrification, dissimilatory nitrate reduction to ammonium and anaerobic ammonium oxidation. In this review we provide an up to date overview of the organisms, genes and enzymes involved in nitrate respiration. We also address the molecular detection of these processes in nature. We show that despite rapid progress in the experimental and genomic analyses of pure cultures, knowledge on the mechanism of nitrate reduction in natural ecosystems is still largely lacking. (C) 2011 Elsevier B. V. All rights reserved.
Stichworte
DNRA;
Nitrate respiration;
Denitrification;
Nitrogen cycle;
Anammox
Erscheinungsjahr
2011
Zeitschriftentitel
Journal of Biotechnology
Band
155
Ausgabe
1
Seite(n)
104-117
ISSN
0168-1656
Page URI
https://pub.uni-bielefeld.de/record/2326440
Zitieren
Kraft B, Strous M, Tegetmeyer H. Microbial nitrate respiration - Genes, enzymes and environmental distribution. Journal of Biotechnology. 2011;155(1):104-117.
Kraft, B., Strous, M., & Tegetmeyer, H. (2011). Microbial nitrate respiration - Genes, enzymes and environmental distribution. Journal of Biotechnology, 155(1), 104-117. https://doi.org/10.1016/j.jbiotec.2010.12.025
Kraft, Beate, Strous, Marc, and Tegetmeyer, Halina. 2011. “Microbial nitrate respiration - Genes, enzymes and environmental distribution”. Journal of Biotechnology 155 (1): 104-117.
Kraft, B., Strous, M., and Tegetmeyer, H. (2011). Microbial nitrate respiration - Genes, enzymes and environmental distribution. Journal of Biotechnology 155, 104-117.
Kraft, B., Strous, M., & Tegetmeyer, H., 2011. Microbial nitrate respiration - Genes, enzymes and environmental distribution. Journal of Biotechnology, 155(1), p 104-117.
B. Kraft, M. Strous, and H. Tegetmeyer, “Microbial nitrate respiration - Genes, enzymes and environmental distribution”, Journal of Biotechnology, vol. 155, 2011, pp. 104-117.
Kraft, B., Strous, M., Tegetmeyer, H.: Microbial nitrate respiration - Genes, enzymes and environmental distribution. Journal of Biotechnology. 155, 104-117 (2011).
Kraft, Beate, Strous, Marc, and Tegetmeyer, Halina. “Microbial nitrate respiration - Genes, enzymes and environmental distribution”. Journal of Biotechnology 155.1 (2011): 104-117.
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Characterizing the plasticity of nitrogen metabolism by the host and symbionts of the hydrothermal vent chemoautotrophic symbioses Ridgeia piscesae.
Liao L, Wankel SD, Wu M, Cavanaugh CM, Girguis PR., Mol Ecol 23(6), 2014
PMID: 24237389
Liao L, Wankel SD, Wu M, Cavanaugh CM, Girguis PR., Mol Ecol 23(6), 2014
PMID: 24237389
Nitrate and periplasmic nitrate reductases.
Sparacino-Watkins C, Stolz JF, Basu P., Chem Soc Rev 43(2), 2014
PMID: 24141308
Sparacino-Watkins C, Stolz JF, Basu P., Chem Soc Rev 43(2), 2014
PMID: 24141308
Refined NrfA phylogeny improves PCR-based nrfA gene detection.
Welsh A, Chee-Sanford JC, Connor LM, Löffler FE, Sanford RA., Appl Environ Microbiol 80(7), 2014
PMID: 24463965
Welsh A, Chee-Sanford JC, Connor LM, Löffler FE, Sanford RA., Appl Environ Microbiol 80(7), 2014
PMID: 24463965
Dissimilatory nitrate reduction by Aspergillus terreus isolated from the seasonal oxygen minimum zone in the Arabian Sea.
Stief P, Fuchs-Ocklenburg S, Kamp A, Manohar CS, Houbraken J, Boekhout T, de Beer D, Stoeck T., BMC Microbiol 14(), 2014
PMID: 24517718
Stief P, Fuchs-Ocklenburg S, Kamp A, Manohar CS, Houbraken J, Boekhout T, de Beer D, Stoeck T., BMC Microbiol 14(), 2014
PMID: 24517718
Elevated nitrate enriches microbial functional genes for potential bioremediation of complexly contaminated sediments.
Xu M, Zhang Q, Xia C, Zhong Y, Sun G, Guo J, Yuan T, Zhou J, He Z., ISME J 8(9), 2014
PMID: 24671084
Xu M, Zhang Q, Xia C, Zhong Y, Sun G, Guo J, Yuan T, Zhou J, He Z., ISME J 8(9), 2014
PMID: 24671084
Nitrogen-cycling genes in epilithic biofilms of oligotrophic high-altitude lakes (central Pyrenees, Spain).
Vila-Costa M, Bartrons M, Catalan J, Casamayor EO., Microb Ecol 68(1), 2014
PMID: 24743884
Vila-Costa M, Bartrons M, Catalan J, Casamayor EO., Microb Ecol 68(1), 2014
PMID: 24743884
Evidence for function overlapping of CymA and the cytochrome bc1 complex in the Shewanella oneidensis nitrate and nitrite respiration.
Fu H, Jin M, Ju L, Mao Y, Gao H., Environ Microbiol 16(10), 2014
PMID: 24650148
Fu H, Jin M, Ju L, Mao Y, Gao H., Environ Microbiol 16(10), 2014
PMID: 24650148
Genetic basis for denitrification in Ensifer meliloti.
Torres MJ, Rubia MI, de la Peña TC, Pueyo JJ, Bedmar EJ, Delgado MJ., BMC Microbiol 14(), 2014
PMID: 24888981
Torres MJ, Rubia MI, de la Peña TC, Pueyo JJ, Bedmar EJ, Delgado MJ., BMC Microbiol 14(), 2014
PMID: 24888981
Land use change alters functional gene diversity, composition and abundance in Amazon forest soil microbial communities.
Paula FS, Rodrigues JL, Zhou J, Wu L, Mueller RC, Mirza BS, Bohannan BJ, Nüsslein K, Deng Y, Tiedje JM, Pellizari VH., Mol Ecol 23(12), 2014
PMID: 24806276
Paula FS, Rodrigues JL, Zhou J, Wu L, Mueller RC, Mirza BS, Bohannan BJ, Nüsslein K, Deng Y, Tiedje JM, Pellizari VH., Mol Ecol 23(12), 2014
PMID: 24806276
The global response regulator RegR controls expression of denitrification genes in Bradyrhizobium japonicum.
Torres MJ, Argandoña M, Vargas C, Bedmar EJ, Fischer HM, Mesa S, Delgado MJ., PLoS One 9(6), 2014
PMID: 24949739
Torres MJ, Argandoña M, Vargas C, Bedmar EJ, Fischer HM, Mesa S, Delgado MJ., PLoS One 9(6), 2014
PMID: 24949739
Nitrate attenuation potential of hypersaline lake sediments in central Spain: flow-through and batch experiments.
Carrey R, Rodríguez-Escales P, Otero N, Ayora C, Soler A, Gómez-Alday JJ., J Contam Hydrol 164(), 2014
PMID: 25041733
Carrey R, Rodríguez-Escales P, Otero N, Ayora C, Soler A, Gómez-Alday JJ., J Contam Hydrol 164(), 2014
PMID: 25041733
Feeding strategies for groundwater enhanced biodenitrification in an alluvial aquifer: chemical, microbial and isotope assessment of a 1D flow-through experiment.
Vidal-Gavilan G, Carrey R, Solanas A, Soler A., Sci Total Environ 494-495(), 2014
PMID: 25051326
Vidal-Gavilan G, Carrey R, Solanas A, Soler A., Sci Total Environ 494-495(), 2014
PMID: 25051326
Nitrogen cycling. The environmental controls that govern the end product of bacterial nitrate respiration.
Kraft B, Tegetmeyer HE, Sharma R, Klotz MG, Ferdelman TG, Hettich RL, Geelhoed JS, Strous M., Science 345(6197), 2014
PMID: 25104387
Kraft B, Tegetmeyer HE, Sharma R, Klotz MG, Ferdelman TG, Hettich RL, Geelhoed JS, Strous M., Science 345(6197), 2014
PMID: 25104387
Rapid succession of uncultured marine bacterial and archaeal populations in a denitrifying continuous culture.
Kraft B, Tegetmeyer HE, Meier D, Geelhoed JS, Strous M., Environ Microbiol 16(10), 2014
PMID: 24976559
Kraft B, Tegetmeyer HE, Meier D, Geelhoed JS, Strous M., Environ Microbiol 16(10), 2014
PMID: 24976559
Acquisition and role of molybdate in Pseudomonas aeruginosa.
Pederick VG, Eijkelkamp BA, Ween MP, Begg SL, Paton JC, McDevitt CA., Appl Environ Microbiol 80(21), 2014
PMID: 25172858
Pederick VG, Eijkelkamp BA, Ween MP, Begg SL, Paton JC, McDevitt CA., Appl Environ Microbiol 80(21), 2014
PMID: 25172858
Systematic genomic analysis reveals the complementary aerobic and anaerobic respiration capacities of the human gut microbiota.
Ravcheev DA, Thiele I., Front Microbiol 5(), 2014
PMID: 25538694
Ravcheev DA, Thiele I., Front Microbiol 5(), 2014
PMID: 25538694
How to make a living from anaerobic ammonium oxidation.
Kartal B, de Almeida NM, Maalcke WJ, Op den Camp HJ, Jetten MS, Keltjens JT., FEMS Microbiol Rev 37(3), 2013
PMID: 23210799
Kartal B, de Almeida NM, Maalcke WJ, Op den Camp HJ, Jetten MS, Keltjens JT., FEMS Microbiol Rev 37(3), 2013
PMID: 23210799
Shotgun metagenomic analysis of metabolic diversity and microbial community structure in experimental vernal pools subjected to nitrate pulse.
Carrino-Kyker SR, Smemo KA, Burke DJ., BMC Microbiol 13(), 2013
PMID: 23574744
Carrino-Kyker SR, Smemo KA, Burke DJ., BMC Microbiol 13(), 2013
PMID: 23574744
Study the catalyzing mechanism of dissolved redox mediators on bio-denitrification by metabolic inhibitors.
Xi Z, Guo J, Lian J, Li H, Zhao L, Liu X, Zhang C, Yang J., Bioresour Technol 140(), 2013
PMID: 23669099
Xi Z, Guo J, Lian J, Li H, Zhao L, Liu X, Zhang C, Yang J., Bioresour Technol 140(), 2013
PMID: 23669099
Metagenomic insights into strategies of carbon conservation and unusual sulfur biogeochemistry in a hypersaline Antarctic lake.
Yau S, Lauro FM, Williams TJ, Demaere MZ, Brown MV, Rich J, Gibson JA, Cavicchioli R., ISME J 7(10), 2013
PMID: 23619305
Yau S, Lauro FM, Williams TJ, Demaere MZ, Brown MV, Rich J, Gibson JA, Cavicchioli R., ISME J 7(10), 2013
PMID: 23619305
Bacillus anthracis co-opts nitric oxide and host serum albumin for pathogenicity in hypoxic conditions.
St John S, Blower R, Popova TG, Narayanan A, Chung MC, Bailey CL, Popov SG., Front Cell Infect Microbiol 3(), 2013
PMID: 23730627
St John S, Blower R, Popova TG, Narayanan A, Chung MC, Bailey CL, Popov SG., Front Cell Infect Microbiol 3(), 2013
PMID: 23730627
Metabolic response of Alicycliphilus denitrificans strain BC toward electron acceptor variation.
Oosterkamp MJ, Boeren S, Plugge CM, Schaap PJ, Stams AJ., Proteomics 13(18-19), 2013
PMID: 23907812
Oosterkamp MJ, Boeren S, Plugge CM, Schaap PJ, Stams AJ., Proteomics 13(18-19), 2013
PMID: 23907812
Sulfide oxidation, nitrate respiration, carbon acquisition, and electron transport pathways suggested by the draft genome of a single orange Guaymas Basin Beggiatoa (Cand. Maribeggiatoa) sp. filament.
MacGregor BJ, Biddle JF, Harbort C, Matthysse AG, Teske A., Mar Genomics 11(), 2013
PMID: 24012537
MacGregor BJ, Biddle JF, Harbort C, Matthysse AG, Teske A., Mar Genomics 11(), 2013
PMID: 24012537
Response of the ubiquitous pelagic diatom Thalassiosira weissflogii to darkness and anoxia.
Kamp A, Stief P, Knappe J, de Beer D., PLoS One 8(12), 2013
PMID: 24312664
Kamp A, Stief P, Knappe J, de Beer D., PLoS One 8(12), 2013
PMID: 24312664
Electrochemically active biofilms: facts and fiction. A review.
Babauta J, Renslow R, Lewandowski Z, Beyenal H., Biofouling 28(8), 2012
PMID: 22856464
Babauta J, Renslow R, Lewandowski Z, Beyenal H., Biofouling 28(8), 2012
PMID: 22856464
Bacterial adaptation of respiration from oxic to microoxic and anoxic conditions: redox control.
Bueno E, Mesa S, Bedmar EJ, Richardson DJ, Delgado MJ., Antioxid Redox Signal 16(8), 2012
PMID: 22098259
Bueno E, Mesa S, Bedmar EJ, Richardson DJ, Delgado MJ., Antioxid Redox Signal 16(8), 2012
PMID: 22098259
Toward a mechanistic understanding of anaerobic nitrate-dependent iron oxidation: balancing electron uptake and detoxification.
Carlson HK, Clark IC, Melnyk RA, Coates JD., Front Microbiol 3(), 2012
PMID: 22363331
Carlson HK, Clark IC, Melnyk RA, Coates JD., Front Microbiol 3(), 2012
PMID: 22363331
Degradation of nitrocellulose-based paint by Desulfovibrio desulfuricans ATCC 13541.
Giacomucci L, Toja F, Sanmartín P, Toniolo L, Prieto B, Villa F, Cappitelli F., Biodegradation 23(5), 2012
PMID: 22367465
Giacomucci L, Toja F, Sanmartín P, Toniolo L, Prieto B, Villa F, Cappitelli F., Biodegradation 23(5), 2012
PMID: 22367465
The periplasmic nitrate reductase nap is required for anaerobic growth and involved in redox control of magnetite biomineralization in Magnetospirillum gryphiswaldense.
Li Y, Katzmann E, Borg S, Schüler D., J Bacteriol 194(18), 2012
PMID: 22730130
Li Y, Katzmann E, Borg S, Schüler D., J Bacteriol 194(18), 2012
PMID: 22730130
Redundancy and modularity in membrane-associated dissimilatory nitrate reduction in Bacillus.
Heylen K, Keltjens J., Front Microbiol 3(), 2012
PMID: 23087684
Heylen K, Keltjens J., Front Microbiol 3(), 2012
PMID: 23087684
Soil nitrate reducing processes - drivers, mechanisms for spatial variation, and significance for nitrous oxide production.
Giles M, Morley N, Baggs EM, Daniell TJ., Front Microbiol 3(), 2012
PMID: 23264770
Giles M, Morley N, Baggs EM, Daniell TJ., Front Microbiol 3(), 2012
PMID: 23264770
A new non-degenerate primer pair for the specific detection of the nitrite reductase gene nrfA in the genus Desulfovibrio.
Giacomucci L, Purdy KJ, Zanardini E, Polo A, Cappitelli F., J Mol Microbiol Biotechnol 22(6), 2012
PMID: 23295220
Giacomucci L, Purdy KJ, Zanardini E, Polo A, Cappitelli F., J Mol Microbiol Biotechnol 22(6), 2012
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References
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