Microbial nitrate respiration - Genes, enzymes and environmental distribution

Kraft B, Strous M, Tegetmeyer H (2011)
Journal of Biotechnology 155(1): 104-117.

Download
Es wurde kein Volltext hochgeladen. Nur Publikationsnachweis!
Zeitschriftenaufsatz | Veröffentlicht | Englisch
Abstract / Bemerkung
Nitrate is a key node in the network of the assimilatory and respiratory nitrogen pathways. As one of the 'fixed' forms of nitrogen, nitrate plays an essential role in both nature and industry. For bacteria, it is both a nitrogen source and an electron acceptor. In agriculture and wastewater treatment, nitrate respiration by microorganisms is an important issue with respect to economics, greenhouse gas emission and public health. Several microbial processes compete for nitrate: denitrification, dissimilatory nitrate reduction to ammonium and anaerobic ammonium oxidation. In this review we provide an up to date overview of the organisms, genes and enzymes involved in nitrate respiration. We also address the molecular detection of these processes in nature. We show that despite rapid progress in the experimental and genomic analyses of pure cultures, knowledge on the mechanism of nitrate reduction in natural ecosystems is still largely lacking. (C) 2011 Elsevier B. V. All rights reserved.
Erscheinungsjahr
Zeitschriftentitel
Journal of Biotechnology
Band
155
Ausgabe
1
Seite(n)
104-117
ISSN
PUB-ID

Zitieren

Kraft B, Strous M, Tegetmeyer H. Microbial nitrate respiration - Genes, enzymes and environmental distribution. Journal of Biotechnology. 2011;155(1):104-117.
Kraft, B., Strous, M., & Tegetmeyer, H. (2011). Microbial nitrate respiration - Genes, enzymes and environmental distribution. Journal of Biotechnology, 155(1), 104-117. doi:10.1016/j.jbiotec.2010.12.025
Kraft, B., Strous, M., and Tegetmeyer, H. (2011). Microbial nitrate respiration - Genes, enzymes and environmental distribution. Journal of Biotechnology 155, 104-117.
Kraft, B., Strous, M., & Tegetmeyer, H., 2011. Microbial nitrate respiration - Genes, enzymes and environmental distribution. Journal of Biotechnology, 155(1), p 104-117.
B. Kraft, M. Strous, and H. Tegetmeyer, “Microbial nitrate respiration - Genes, enzymes and environmental distribution”, Journal of Biotechnology, vol. 155, 2011, pp. 104-117.
Kraft, B., Strous, M., Tegetmeyer, H.: Microbial nitrate respiration - Genes, enzymes and environmental distribution. Journal of Biotechnology. 155, 104-117 (2011).
Kraft, Beate, Strous, Marc, and Tegetmeyer, Halina. “Microbial nitrate respiration - Genes, enzymes and environmental distribution”. Journal of Biotechnology 155.1 (2011): 104-117.

90 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Manganese Oxide Biomineralization Provides Protection against Nitrite Toxicity in a Cell-Density-Dependent Manner.
Zerfaß C, Christie-Oleza JA, Soyer OS., Appl Environ Microbiol 85(2), 2019
PMID: 30413475
Resource Concentration Modulates the Fate of Dissimilated Nitrogen in a Dual-Pathway Actinobacterium.
Vuono DC, Read RW, Hemp J, Sullivan BW, Arnone JA, Neveux I, Blank RR, Loney E, Miceli D, Winkler MH, Chakraborty R, Stahl DA, Grzymski JJ., Front Microbiol 10(), 2019
PMID: 30723459
Characterization of Aerobic Denitrifying Bacterium Pseudomonas mendocina Strain GL6 and Its Potential Application in Wastewater Treatment Plant Effluent.
Zhang W, Yan C, Shen J, Wei R, Gao Y, Miao A, Xiao L, Yang L., Int J Environ Res Public Health 16(3), 2019
PMID: 30696062
Methanobactin from Methylosinus trichosporium OB3b inhibits N2O reduction in denitrifiers.
Chang J, Gu W, Park D, Semrau JD, DiSpirito AA, Yoon S., ISME J 12(8), 2018
PMID: 29330532
Denitrifying haloarchaea: sources and sinks of nitrogenous gases.
Torregrosa-Crespo J, Bergaust L, Pire C, Martínez-Espinosa RM., FEMS Microbiol Lett 365(3), 2018
PMID: 29237000
Distinct Microbial Community Performing Dissimilatory Nitrate Reduction to Ammonium (DNRA) in a High C/NO3- Reactor.
Chutivisut P, Isobe K, Powtongsook S, Pungrasmi W, Kurisu F., Microbes Environ 33(3), 2018
PMID: 30089740
Copepod-Associated Gammaproteobacteria Respire Nitrate in the Open Ocean Surface Layers.
Moisander PH, Shoemaker KM, Daley MC, McCliment E, Larkum J, Altabet MA., Front Microbiol 9(), 2018
PMID: 30369912
Chaperones in maturation of molybdoenzymes: Why specific is better than general?
Lemaire ON, Bouillet S, Méjean V, Iobbi-Nivol C, Genest O., Bioengineered 8(2), 2017
PMID: 27580420
Characteristics of two novel cold- and salt-tolerant ammonia-oxidizing bacteria from Liaohe Estuarine Wetland.
Huang X, Bai J, Li KR, Zhao YG, Tian WJ, Dang JJ., Mar Pollut Bull 114(1), 2017
PMID: 27622929
Effect of pesticides and metabolites on groundwater bacterial community.
Mauffret A, Baran N, Joulian C., Sci Total Environ 576(), 2017
PMID: 27838578
Subsurface nitrate reduction under wetlands takes place in narrow superficial zones.
Ribas D, Calderer M, Marti V, Johnsen AR, Aamand J, Nilsson B, Jensen JK, Engesgaard P, Morici C., Environ Technol 38(21), 2017
PMID: 28004595
Feasibility of two low-cost organic substrates for inducing denitrification in artificial recharge ponds: Batch and flow-through experiments.
Grau-Martínez A, Torrentó C, Carrey R, Rodríguez-Escales P, Domènech C, Ghiglieri G, Soler A, Otero N., J Contam Hydrol 198(), 2017
PMID: 28131436
Agricultural soil denitrifiers possess extensive nitrite reductase gene diversity.
Coyotzi S, Doxey AC, Clark ID, Lapen DR, Van Cappellen P, Neufeld JD., Environ Microbiol 19(3), 2017
PMID: 27943515
Genomic Analysis of Caldithrix abyssi, the Thermophilic Anaerobic Bacterium of the Novel Bacterial Phylum Calditrichaeota.
Kublanov IV, Sigalova OM, Gavrilov SN, Lebedinsky AV, Rinke C, Kovaleva O, Chernyh NA, Ivanova N, Daum C, Reddy TB, Klenk HP, Spring S, Göker M, Reva ON, Miroshnichenko ML, Kyrpides NC, Woyke T, Gelfand MS, Bonch-Osmolovskaya EA., Front Microbiol 8(), 2017
PMID: 28265262
Integrated metabolism in sponge-microbe symbiosis revealed by genome-centered metatranscriptomics.
Moitinho-Silva L, Díez-Vives C, Batani G, Esteves AI, Jahn MT, Thomas T., ISME J 11(7), 2017
PMID: 28338677
Role of nitrite in the competition between denitrification and DNRA in a chemostat enrichment culture.
van den Berg EM, Rombouts JL, Kuenen JG, Kleerebezem R, van Loosdrecht MCM., AMB Express 7(1), 2017
PMID: 28497287
Simultaneous selenate reduction and denitrification by a consortium of enriched mine site bacteria.
Subedi G, Taylor J, Hatam I, Baldwin SA., Chemosphere 183(), 2017
PMID: 28570897
Targeted quantification of functional enzyme dynamics in environmental samples for microbially mediated biogeochemical processes.
Li M, Gao Y, Qian WJ, Shi L, Liu Y, Nelson WC, Nicora CD, Resch CT, Thompson C, Yan S, Fredrickson JK, Zachara JM, Liu C., Environ Microbiol Rep 9(5), 2017
PMID: 28618201
FixK2 Is the Main Transcriptional Activator of Bradyrhizobium diazoefficiens nosRZDYFLX Genes in Response to Low Oxygen.
Torres MJ, Bueno E, Jiménez-Leiva A, Cabrera JJ, Bedmar EJ, Mesa S, Delgado MJ., Front Microbiol 8(), 2017
PMID: 28912756
Fermentative Bacteria Influence the Competition between Denitrifiers and DNRA Bacteria.
van den Berg EM, Elisário MP, Kuenen JG, Kleerebezem R, van Loosdrecht MCM., Front Microbiol 8(), 2017
PMID: 28928722
Regulation-Structured Dynamic Metabolic Model Provides a Potential Mechanism for Delayed Enzyme Response in Denitrification Process.
Song HS, Thomas DG, Stegen JC, Li M, Liu C, Song X, Chen X, Fredrickson JK, Zachara JM, Scheibe TD., Front Microbiol 8(), 2017
PMID: 29046664
Polynucleobacter aenigmaticus sp. nov. isolated from the permanently anoxic monimolimnion of a temperate meromictic lake.
Hahn MW, Koll U, Karbon G, Schmidt J, Lang E., Int J Syst Evol Microbiol 67(11), 2017
PMID: 29022553
Hierarchical Control of Nitrite Respiration by Transcription Factors Encoded within Mobile Gene Clusters of Thermus thermophilus.
Alvarez L, Quintáns NG, Blesa A, Baquedano I, Mencía M, Bricio C, Berenguer J., Genes (Basel) 8(12), 2017
PMID: 29194386
Determining Roles of Accessory Genes in Denitrification by Mutant Fitness Analyses.
Vaccaro BJ, Thorgersen MP, Lancaster WA, Price MN, Wetmore KM, Poole FL, Deutschbauer A, Arkin AP, Adams MW., Appl Environ Microbiol 82(1), 2016
PMID: 26452555
Bacterial molybdoenzymes: old enzymes for new purposes.
Leimkühler S, Iobbi-Nivol C., FEMS Microbiol Rev 40(1), 2016
PMID: 26468212
Effects of inorganic salts on denitrifying granular sludge: The acute toxicity and working mechanisms.
Wang R, Zheng P, Ding AQ, Zhang M, Ghulam A, Yang C, Zhao HP., Bioresour Technol 204(), 2016
PMID: 26773376
New concepts of microbial treatment processes for the nitrogen removal: effect of protein and amino acids degradation.
González-Martínez A, Calderón K, González-López J., Amino Acids 48(5), 2016
PMID: 26856581
Comparative Analysis of Lacinutrix Genomes and Their Association with Bacterial Habitat.
Lee YM, Kim MK, Ahn do H, Kim HW, Park H, Shin SC., PLoS One 11(2), 2016
PMID: 26882010
High-quality draft genome sequence of the Thermus amyloliquefaciens type strain YIM 77409(T) with an incomplete denitrification pathway.
Zhou EM, Murugapiran SK, Mefferd CC, Liu L, Xian WD, Yin YR, Ming H, Yu TT, Huntemann M, Clum A, Pillay M, Palaniappan K, Varghese N, Mikhailova N, Stamatis D, Reddy TB, Ngan CY, Daum C, Shapiro N, Markowitz V, Ivanova N, Spunde A, Kyrpides N, Woyke T, Li WJ, Hedlund BP., Stand Genomic Sci 11(), 2016
PMID: 26925197
Habitat partitioning of marine benthic denitrifier communities in response to oxygen availability.
Wittorf L, Bonilla-Rosso G, Jones CM, Bäckman O, Hulth S, Hallin S., Environ Microbiol Rep 8(4), 2016
PMID: 26929183
Nitrate and the Origin of Saliva Influence Composition and Short Chain Fatty Acid Production of Oral Microcosms.
Koopman JE, Buijs MJ, Brandt BW, Keijser BJ, Crielaard W, Zaura E., Microb Ecol 72(2), 2016
PMID: 27155967
Metatranscriptomics reveals the molecular mechanism of large granule formation in granular anammox reactor.
Bagchi S, Lamendella R, Strutt S, Van Loosdrecht MC, Saikaly PE., Sci Rep 6(), 2016
PMID: 27319320
Global biogeography of microbial nitrogen-cycling traits in soil.
Nelson MB, Martiny AC, Martiny JB., Proc Natl Acad Sci U S A 113(29), 2016
PMID: 27432978
Metagenomic insight of nitrogen metabolism in a tannery wastewater treatment plant bioaugmented with the microbial consortium BM-S-1.
Sul WJ, Kim IS, Ekpeghere KI, Song B, Kim BS, Kim HG, Kim JT, Koh SC., J Environ Sci Health A Tox Hazard Subst Environ Eng 51(13), 2016
PMID: 27471001
Anammox Biochemistry: a Tale of Heme c Proteins.
Kartal B, Keltjens JT., Trends Biochem Sci 41(12), 2016
PMID: 27669648
Enrichment of denitratating bacteria from a methylotrophic denitrifying culture.
Li W, Lin XY, Chen JJ, Cai CY, Abbas G, Hu ZQ, Zhao HP, Zheng P., Appl Microbiol Biotechnol 100(23), 2016
PMID: 27709289
Intracellular Nitrate of Marine Diatoms as a Driver of Anaerobic Nitrogen Cycling in Sinking Aggregates.
Kamp A, Stief P, Bristow LA, Thamdrup B, Glud RN., Front Microbiol 7(), 2016
PMID: 27847498
DNRA and Denitrification Coexist over a Broad Range of Acetate/N-NO3- Ratios, in a Chemostat Enrichment Culture.
van den Berg EM, Boleij M, Kuenen JG, Kleerebezem R, van Loosdrecht MC., Front Microbiol 7(), 2016
PMID: 27933040
Genome sequence and overview of Oligoflexus tunisiensis Shr3T in the eighth class Oligoflexia of the phylum Proteobacteria.
Nakai R, Fujisawa T, Nakamura Y, Baba T, Nishijima M, Karray F, Sayadi S, Isoda H, Naganuma T, Niki H., Stand Genomic Sci 11(), 2016
PMID: 27999625
Selective Pressure of Temperature on Competition and Cross-Feeding within Denitrifying and Fermentative Microbial Communities.
Hanke A, Berg J, Hargesheimer T, Tegetmeyer HE, Sharp CE, Strous M., Front Microbiol 6(), 2015
PMID: 26779132
Genomic insights into the uncultivated marine Zetaproteobacteria at Loihi Seamount.
Field EK, Sczyrba A, Lyman AE, Harris CC, Woyke T, Stepanauskas R, Emerson D., ISME J 9(4), 2015
PMID: 25303714
Enrichment of DNRA bacteria in a continuous culture.
van den Berg EM, van Dongen U, Abbas B, van Loosdrecht MC., ISME J 9(10), 2015
PMID: 25909972
Nitrate Storage and Dissimilatory Nitrate Reduction by Eukaryotic Microbes.
Kamp A, Høgslund S, Risgaard-Petersen N, Stief P., Front Microbiol 6(), 2015
PMID: 26734001
Making a living while starving in the dark: metagenomic insights into the energy dynamics of a carbonate cave.
Ortiz M, Legatzki A, Neilson JW, Fryslie B, Nelson WM, Wing RA, Soderlund CA, Pryor BM, Maier RM., ISME J 8(2), 2014
PMID: 24030597
Metabolic versatility of toluene-degrading, iron-reducing bacteria in tidal flat sediment, characterized by stable isotope probing-based metagenomic analysis.
Kim SJ, Park SJ, Cha IT, Min D, Kim JS, Chung WH, Chae JC, Jeon CO, Rhee SK., Environ Microbiol 16(1), 2014
PMID: 24118987
Nitrate and periplasmic nitrate reductases.
Sparacino-Watkins C, Stolz JF, Basu P., Chem Soc Rev 43(2), 2014
PMID: 24141308
Refined NrfA phylogeny improves PCR-based nrfA gene detection.
Welsh A, Chee-Sanford JC, Connor LM, Löffler FE, Sanford RA., Appl Environ Microbiol 80(7), 2014
PMID: 24463965
The mononuclear molybdenum enzymes.
Hille R, Hall J, Basu P., Chem Rev 114(7), 2014
PMID: 24467397
Dissimilatory nitrate reduction by Aspergillus terreus isolated from the seasonal oxygen minimum zone in the Arabian Sea.
Stief P, Fuchs-Ocklenburg S, Kamp A, Manohar CS, Houbraken J, Boekhout T, de Beer D, Stoeck T., BMC Microbiol 14(), 2014
PMID: 24517718
Elevated nitrate enriches microbial functional genes for potential bioremediation of complexly contaminated sediments.
Xu M, Zhang Q, Xia C, Zhong Y, Sun G, Guo J, Yuan T, Zhou J, He Z., ISME J 8(9), 2014
PMID: 24671084
Nitrogen-cycling genes in epilithic biofilms of oligotrophic high-altitude lakes (central Pyrenees, Spain).
Vila-Costa M, Bartrons M, Catalan J, Casamayor EO., Microb Ecol 68(1), 2014
PMID: 24743884
Genetic basis for denitrification in Ensifer meliloti.
Torres MJ, Rubia MI, de la Peña TC, Pueyo JJ, Bedmar EJ, Delgado MJ., BMC Microbiol 14(), 2014
PMID: 24888981
Land use change alters functional gene diversity, composition and abundance in Amazon forest soil microbial communities.
Paula FS, Rodrigues JL, Zhou J, Wu L, Mueller RC, Mirza BS, Bohannan BJ, Nüsslein K, Deng Y, Tiedje JM, Pellizari VH., Mol Ecol 23(12), 2014
PMID: 24806276
The global response regulator RegR controls expression of denitrification genes in Bradyrhizobium japonicum.
Torres MJ, Argandoña M, Vargas C, Bedmar EJ, Fischer HM, Mesa S, Delgado MJ., PLoS One 9(6), 2014
PMID: 24949739
Nitrate attenuation potential of hypersaline lake sediments in central Spain: flow-through and batch experiments.
Carrey R, Rodríguez-Escales P, Otero N, Ayora C, Soler A, Gómez-Alday JJ., J Contam Hydrol 164(), 2014
PMID: 25041733
Nitrogen cycling. The environmental controls that govern the end product of bacterial nitrate respiration.
Kraft B, Tegetmeyer HE, Sharma R, Klotz MG, Ferdelman TG, Hettich RL, Geelhoed JS, Strous M., Science 345(6197), 2014
PMID: 25104387
Rapid succession of uncultured marine bacterial and archaeal populations in a denitrifying continuous culture.
Kraft B, Tegetmeyer HE, Meier D, Geelhoed JS, Strous M., Environ Microbiol 16(10), 2014
PMID: 24976559
Acquisition and role of molybdate in Pseudomonas aeruginosa.
Pederick VG, Eijkelkamp BA, Ween MP, Begg SL, Paton JC, McDevitt CA., Appl Environ Microbiol 80(21), 2014
PMID: 25172858
How to make a living from anaerobic ammonium oxidation.
Kartal B, de Almeida NM, Maalcke WJ, Op den Camp HJ, Jetten MS, Keltjens JT., FEMS Microbiol Rev 37(3), 2013
PMID: 23210799
Study the catalyzing mechanism of dissolved redox mediators on bio-denitrification by metabolic inhibitors.
Xi Z, Guo J, Lian J, Li H, Zhao L, Liu X, Zhang C, Yang J., Bioresour Technol 140(), 2013
PMID: 23669099
Metagenomic insights into strategies of carbon conservation and unusual sulfur biogeochemistry in a hypersaline Antarctic lake.
Yau S, Lauro FM, Williams TJ, Demaere MZ, Brown MV, Rich J, Gibson JA, Cavicchioli R., ISME J 7(10), 2013
PMID: 23619305
Bacillus anthracis co-opts nitric oxide and host serum albumin for pathogenicity in hypoxic conditions.
St John S, Blower R, Popova TG, Narayanan A, Chung MC, Bailey CL, Popov SG., Front Cell Infect Microbiol 3(), 2013
PMID: 23730627
Metabolic response of Alicycliphilus denitrificans strain BC toward electron acceptor variation.
Oosterkamp MJ, Boeren S, Plugge CM, Schaap PJ, Stams AJ., Proteomics 13(18-19), 2013
PMID: 23907812
Response of the ubiquitous pelagic diatom Thalassiosira weissflogii to darkness and anoxia.
Kamp A, Stief P, Knappe J, de Beer D., PLoS One 8(12), 2013
PMID: 24312664
Electrochemically active biofilms: facts and fiction. A review.
Babauta J, Renslow R, Lewandowski Z, Beyenal H., Biofouling 28(8), 2012
PMID: 22856464
Bacterial adaptation of respiration from oxic to microoxic and anoxic conditions: redox control.
Bueno E, Mesa S, Bedmar EJ, Richardson DJ, Delgado MJ., Antioxid Redox Signal 16(8), 2012
PMID: 22098259
Degradation of nitrocellulose-based paint by Desulfovibrio desulfuricans ATCC 13541.
Giacomucci L, Toja F, Sanmartín P, Toniolo L, Prieto B, Villa F, Cappitelli F., Biodegradation 23(5), 2012
PMID: 22367465
A new non-degenerate primer pair for the specific detection of the nitrite reductase gene nrfA in the genus Desulfovibrio.
Giacomucci L, Purdy KJ, Zanardini E, Polo A, Cappitelli F., J Mol Microbiol Biotechnol 22(6), 2012
PMID: 23295220

Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®

Quellen

PMID: 21219945
PubMed | Europe PMC

Suchen in

Google Scholar