Expression of small RNAs in Rhizobiales and protection of a small RNA and its degradation products by Hfq in Sinorhizobium meliloti
Voss B, Holscher M, Baumgarth B, Kalbfleisch A, Kaya C, Hess WR, Becker A, Evguenieva-Hackenberg E (2009)
Biochemical and Biophysical Research Communications 390(2): 331-336.
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Autor*in
Voss, Björn;
Holscher, Marion;
Baumgarth, Birgit;
Kalbfleisch, Andreas;
Kaya, Ceren;
Hess, Wolfgang R.;
Becker, Anke;
Evguenieva-Hackenberg, Elena
Abstract / Bemerkung
Regulatory RNA plays a pivotal role in the regulation of bacterial gene expression. Here, five small RNAs were studied in Sinorhizobium meliloti - SmrC15, SmrC16, Sra33, 6S and the signal recognition particle (SRP) RNA, which are conserved among at least seven different Rhizobium and Sinorhizobium species. The amount of SmrC16 decreased in stationary phase, while the other RNAs were up-regulated. The smallest changes, maximally 2-fold, were observed for 6S RNA. In the distantly related Bradyrhizobium japonicum, the amount of 6S RNA was not increased in stationary phase, suggesting some functional divergence in the roles of this molecule in Rhizobiales in comparison to Escherichia coli. Different decay rates were observed for SmrC15 and SmrC16 of S. meliloti upon rifampicin treatment, revealing posttranscriptional regulation during growth. The use of a Deltahfq mutant showed that Hfq protects full-length SmrC16 from degradation and stabilises its specific degradation products.
Erscheinungsjahr
2009
Zeitschriftentitel
Biochemical and Biophysical Research Communications
Band
390
Ausgabe
2
Seite(n)
331-336
ISSN
0006-291X
Page URI
https://pub.uni-bielefeld.de/record/2092111
Zitieren
Voss B, Holscher M, Baumgarth B, et al. Expression of small RNAs in Rhizobiales and protection of a small RNA and its degradation products by Hfq in Sinorhizobium meliloti. Biochemical and Biophysical Research Communications. 2009;390(2):331-336.
Voss, B., Holscher, M., Baumgarth, B., Kalbfleisch, A., Kaya, C., Hess, W. R., Becker, A., et al. (2009). Expression of small RNAs in Rhizobiales and protection of a small RNA and its degradation products by Hfq in Sinorhizobium meliloti. Biochemical and Biophysical Research Communications, 390(2), 331-336. https://doi.org/10.1016/j.bbrc.2009.09.125
Voss, Björn, Holscher, Marion, Baumgarth, Birgit, Kalbfleisch, Andreas, Kaya, Ceren, Hess, Wolfgang R., Becker, Anke, and Evguenieva-Hackenberg, Elena. 2009. “Expression of small RNAs in Rhizobiales and protection of a small RNA and its degradation products by Hfq in Sinorhizobium meliloti”. Biochemical and Biophysical Research Communications 390 (2): 331-336.
Voss, B., Holscher, M., Baumgarth, B., Kalbfleisch, A., Kaya, C., Hess, W. R., Becker, A., and Evguenieva-Hackenberg, E. (2009). Expression of small RNAs in Rhizobiales and protection of a small RNA and its degradation products by Hfq in Sinorhizobium meliloti. Biochemical and Biophysical Research Communications 390, 331-336.
Voss, B., et al., 2009. Expression of small RNAs in Rhizobiales and protection of a small RNA and its degradation products by Hfq in Sinorhizobium meliloti. Biochemical and Biophysical Research Communications, 390(2), p 331-336.
B. Voss, et al., “Expression of small RNAs in Rhizobiales and protection of a small RNA and its degradation products by Hfq in Sinorhizobium meliloti”, Biochemical and Biophysical Research Communications, vol. 390, 2009, pp. 331-336.
Voss, B., Holscher, M., Baumgarth, B., Kalbfleisch, A., Kaya, C., Hess, W.R., Becker, A., Evguenieva-Hackenberg, E.: Expression of small RNAs in Rhizobiales and protection of a small RNA and its degradation products by Hfq in Sinorhizobium meliloti. Biochemical and Biophysical Research Communications. 390, 331-336 (2009).
Voss, Björn, Holscher, Marion, Baumgarth, Birgit, Kalbfleisch, Andreas, Kaya, Ceren, Hess, Wolfgang R., Becker, Anke, and Evguenieva-Hackenberg, Elena. “Expression of small RNAs in Rhizobiales and protection of a small RNA and its degradation products by Hfq in Sinorhizobium meliloti”. Biochemical and Biophysical Research Communications 390.2 (2009): 331-336.
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26 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
Transcription attenuation-derived small RNA rnTrpL regulates tryptophan biosynthesis gene expression in trans.
Melior H, Li S, Madhugiri R, Stötzel M, Azarderakhsh S, Barth-Weber S, Baumgardt K, Ziebuhr J, Evguenieva-Hackenberg E., Nucleic Acids Res 47(12), 2019
PMID: 30993322
Melior H, Li S, Madhugiri R, Stötzel M, Azarderakhsh S, Barth-Weber S, Baumgardt K, Ziebuhr J, Evguenieva-Hackenberg E., Nucleic Acids Res 47(12), 2019
PMID: 30993322
An account of evolutionary specialization: the AbcR small RNAs in the Rhizobiales.
Sheehan LM, Caswell CC., Mol Microbiol 107(1), 2018
PMID: 29076560
Sheehan LM, Caswell CC., Mol Microbiol 107(1), 2018
PMID: 29076560
Use of RNA Immunoprecipitation Method for Determining Sinorhizobium meliloti RNA-Hfq Protein Associations In Vivo.
Gao M, Benge A, Mesa JM, Javier R, Liu FX., Biol Proced Online 20(), 2018
PMID: 29743820
Gao M, Benge A, Mesa JM, Javier R, Liu FX., Biol Proced Online 20(), 2018
PMID: 29743820
6S RNA, a Global Regulator of Transcription.
Wassarman KM., Microbiol Spectr 6(3), 2018
PMID: 29916345
Wassarman KM., Microbiol Spectr 6(3), 2018
PMID: 29916345
Conserved small mRNA with an unique, extended Shine-Dalgarno sequence.
Hahn J, Thalmann S, Migur A, von Boeselager RF, Kubatova N, Kubareva E, Schwalbe H, Evguenieva-Hackenberg E., RNA Biol 14(10), 2017
PMID: 27834614
Hahn J, Thalmann S, Migur A, von Boeselager RF, Kubatova N, Kubareva E, Schwalbe H, Evguenieva-Hackenberg E., RNA Biol 14(10), 2017
PMID: 27834614
A Genome-Wide Prediction and Identification of Intergenic Small RNAs by Comparative Analysis in Mesorhizobium huakuii 7653R.
Fuli X, Wenlong Z, Xiao W, Jing Z, Baohai H, Zhengzheng Z, Bin-Guang M, Youguo L., Front Microbiol 8(), 2017
PMID: 28943874
Fuli X, Wenlong Z, Xiao W, Jing Z, Baohai H, Zhengzheng Z, Bin-Guang M, Youguo L., Front Microbiol 8(), 2017
PMID: 28943874
6S RNA in Rhodobacter sphaeroides: 6S RNA and pRNA transcript levels peak in late exponential phase and gene deletion causes a high salt stress phenotype.
Elkina D, Weber L, Lechner M, Burenina O, Weisert A, Kubareva E, Hartmann RK, Klug G., RNA Biol 14(11), 2017
PMID: 28692405
Elkina D, Weber L, Lechner M, Burenina O, Weisert A, Kubareva E, Hartmann RK, Klug G., RNA Biol 14(11), 2017
PMID: 28692405
RNA silencing in plant symbiotic bacteria: Insights from a protein-centric view.
Jiménez-Zurdo JI, Robledo M., RNA Biol 14(12), 2017
PMID: 28805544
Jiménez-Zurdo JI, Robledo M., RNA Biol 14(12), 2017
PMID: 28805544
The stress-related, rhizobial small RNA RcsR1 destabilizes the autoinducer synthase encoding mRNA sinI in Sinorhizobium meliloti.
Baumgardt K, Šmídová K, Rahn H, Lochnit G, Robledo M, Evguenieva-Hackenberg E., RNA Biol 13(5), 2016
PMID: 26588798
Baumgardt K, Šmídová K, Rahn H, Lochnit G, Robledo M, Evguenieva-Hackenberg E., RNA Biol 13(5), 2016
PMID: 26588798
Regulation of fixLJ by Hfq Controls Symbiotically Important Genes in Sinorhizobium meliloti.
Gao M, Nguyen H, Salas González I, Teplitski M., Mol Plant Microbe Interact 29(11), 2016
PMID: 27712144
Gao M, Nguyen H, Salas González I, Teplitski M., Mol Plant Microbe Interact 29(11), 2016
PMID: 27712144
6S RNA: recent answers--future questions.
Steuten B, Schneider S, Wagner R., Mol Microbiol 91(4), 2014
PMID: 24308327
Steuten B, Schneider S, Wagner R., Mol Microbiol 91(4), 2014
PMID: 24308327
RNase E affects the expression of the acyl-homoserine lactone synthase gene sinI in Sinorhizobium meliloti.
Baumgardt K, Charoenpanich P, McIntosh M, Schikora A, Stein E, Thalmann S, Kogel KH, Klug G, Becker A, Evguenieva-Hackenberg E., J Bacteriol 196(7), 2014
PMID: 24488310
Baumgardt K, Charoenpanich P, McIntosh M, Schikora A, Stein E, Thalmann S, Kogel KH, Klug G, Becker A, Evguenieva-Hackenberg E., J Bacteriol 196(7), 2014
PMID: 24488310
Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium meliloti.
Torres-Quesada O, Reinkensmeier J, Schlüter JP, Robledo M, Peregrina A, Giegerich R, Toro N, Becker A, Jiménez-Zurdo JI., RNA Biol 11(5), 2014
PMID: 24786641
Torres-Quesada O, Reinkensmeier J, Schlüter JP, Robledo M, Peregrina A, Giegerich R, Toro N, Becker A, Jiménez-Zurdo JI., RNA Biol 11(5), 2014
PMID: 24786641
6S RNA, a global regulator of transcription in Escherichia coli, Bacillus subtilis, and beyond.
Cavanagh AT, Wassarman KM., Annu Rev Microbiol 68(), 2014
PMID: 24742053
Cavanagh AT, Wassarman KM., Annu Rev Microbiol 68(), 2014
PMID: 24742053
Two separate modules of the conserved regulatory RNA AbcR1 address multiple target mRNAs in and outside of the translation initiation region.
Overlöper A, Kraus A, Gurski R, Wright PR, Georg J, Hess WR, Narberhaus F., RNA Biol 11(5), 2014
PMID: 24921646
Overlöper A, Kraus A, Gurski R, Wright PR, Georg J, Hess WR, Narberhaus F., RNA Biol 11(5), 2014
PMID: 24921646
Riboregulation in plant-associated α-proteobacteria.
Becker A, Overlöper A, Schlüter JP, Reinkensmeier J, Robledo M, Giegerich R, Narberhaus F, Evguenieva-Hackenberg E., RNA Biol 11(5), 2014
PMID: 25003187
Becker A, Overlöper A, Schlüter JP, Reinkensmeier J, Robledo M, Giegerich R, Narberhaus F, Evguenieva-Hackenberg E., RNA Biol 11(5), 2014
PMID: 25003187
Insights into the noncoding RNome of nitrogen-fixing endosymbiotic α-proteobacteria.
Jiménez-Zurdo JI, Valverde C, Becker A., Mol Plant Microbe Interact 26(2), 2013
PMID: 22991999
Jiménez-Zurdo JI, Valverde C, Becker A., Mol Plant Microbe Interact 26(2), 2013
PMID: 22991999
Independent activity of the homologous small regulatory RNAs AbcR1 and AbcR2 in the legume symbiont Sinorhizobium meliloti.
Torres-Quesada O, Millán V, Nisa-Martínez R, Bardou F, Crespi M, Toro N, Jiménez-Zurdo JI., PLoS One 8(7), 2013
PMID: 23869210
Torres-Quesada O, Millán V, Nisa-Martínez R, Bardou F, Crespi M, Toro N, Jiménez-Zurdo JI., PLoS One 8(7), 2013
PMID: 23869210
Small RNAs of the Bradyrhizobium/Rhodopseudomonas lineage and their analysis.
Madhugiri R, Pessi G, Voss B, Hahn J, Sharma CM, Reinhardt R, Vogel J, Hess WR, Fischer HM, Evguenieva-Hackenberg E., RNA Biol 9(1), 2012
PMID: 22258152
Madhugiri R, Pessi G, Voss B, Hahn J, Sharma CM, Reinhardt R, Vogel J, Hess WR, Fischer HM, Evguenieva-Hackenberg E., RNA Biol 9(1), 2012
PMID: 22258152
A survey of sRNA families in α-proteobacteria.
del Val C, Romero-Zaliz R, Torres-Quesada O, Peregrina A, Toro N, Jiménez-Zurdo JI., RNA Biol 9(2), 2012
PMID: 22418845
del Val C, Romero-Zaliz R, Torres-Quesada O, Peregrina A, Toro N, Jiménez-Zurdo JI., RNA Biol 9(2), 2012
PMID: 22418845
Hfq influences multiple transport systems and virulence in the plant pathogen Agrobacterium tumefaciens.
Wilms I, Möller P, Stock AM, Gurski R, Lai EM, Narberhaus F., J Bacteriol 194(19), 2012
PMID: 22821981
Wilms I, Möller P, Stock AM, Gurski R, Lai EM, Narberhaus F., J Bacteriol 194(19), 2012
PMID: 22821981
Small RNA-mediated control of the Agrobacterium tumefaciens GABA binding protein.
Wilms I, Voss B, Hess WR, Leichert LI, Narberhaus F., Mol Microbiol 80(2), 2011
PMID: 21320185
Wilms I, Voss B, Hess WR, Leichert LI, Narberhaus F., Mol Microbiol 80(2), 2011
PMID: 21320185
Evidences of autoregulation of hfq expression in Sinorhizobium meliloti strain 2011.
Sobrero P, Valverde C., Arch Microbiol 193(9), 2011
PMID: 21484295
Sobrero P, Valverde C., Arch Microbiol 193(9), 2011
PMID: 21484295
Contribution of Hfq to photooxidative stress resistance and global regulation in Rhodobacter sphaeroides.
Berghoff BA, Glaeser J, Sharma CM, Zobawa M, Lottspeich F, Vogel J, Klug G., Mol Microbiol 80(6), 2011
PMID: 21535243
Berghoff BA, Glaeser J, Sharma CM, Zobawa M, Lottspeich F, Vogel J, Klug G., Mol Microbiol 80(6), 2011
PMID: 21535243
The Sinorhizobium meliloti RNA chaperone Hfq influences central carbon metabolism and the symbiotic interaction with alfalfa.
Torres-Quesada O, Oruezabal RI, Peregrina A, Jofré E, Lloret J, Rivilla R, Toro N, Jiménez-Zurdo JI., BMC Microbiol 10(), 2010
PMID: 20205931
Torres-Quesada O, Oruezabal RI, Peregrina A, Jofré E, Lloret J, Rivilla R, Toro N, Jiménez-Zurdo JI., BMC Microbiol 10(), 2010
PMID: 20205931
Role of the Sinorhizobium meliloti global regulator Hfq in gene regulation and symbiosis.
Gao M, Barnett MJ, Long SR, Teplitski M., Mol Plant Microbe Interact 23(4), 2010
PMID: 20192823
Gao M, Barnett MJ, Long SR, Teplitski M., Mol Plant Microbe Interact 23(4), 2010
PMID: 20192823
21 References
Daten bereitgestellt von Europe PubMed Central.
Identification of bacterial small non-coding RNAs: experimental approaches.
Altuvia S., Curr. Opin. Microbiol. 10(3), 2007
PMID: 17553733
Altuvia S., Curr. Opin. Microbiol. 10(3), 2007
PMID: 17553733
Biocomputational prediction of non-coding RNAs in model cyanobacteria.
Voss B, Georg J, Schon V, Ude S, Hess WR., BMC Genomics 10(), 2009
PMID: 19309518
Voss B, Georg J, Schon V, Ude S, Hess WR., BMC Genomics 10(), 2009
PMID: 19309518
Identification of differentially expressed small non-coding RNAs in the legume endosymbiont Sinorhizobium meliloti by comparative genomics.
del Val C, Rivas E, Torres-Quesada O, Toro N, Jimenez-Zurdo JI., Mol. Microbiol. 66(5), 2007
PMID: 17971083
del Val C, Rivas E, Torres-Quesada O, Toro N, Jimenez-Zurdo JI., Mol. Microbiol. 66(5), 2007
PMID: 17971083
Identification of chromosomal alpha-proteobacterial small RNAs by comparative genome analysis and detection in Sinorhizobium meliloti strain 1021.
Ulve VM, Sevin EW, Cheron A, Barloy-Hubler F., BMC Genomics 8(), 2007
PMID: 18093320
Ulve VM, Sevin EW, Cheron A, Barloy-Hubler F., BMC Genomics 8(), 2007
PMID: 18093320
Prediction of Sinorhizobium meliloti sRNA genes and experimental detection in strain 2011.
Valverde C, Livny J, Schluter JP, Reinkensmeier J, Becker A, Parisi G., BMC Genomics 9(), 2008
PMID: 18793445
Valverde C, Livny J, Schluter JP, Reinkensmeier J, Becker A, Parisi G., BMC Genomics 9(), 2008
PMID: 18793445
Hfq structure, function and ligand binding.
Brennan RG, Link TM., Curr. Opin. Microbiol. 10(2), 2007
PMID: 17395525
Brennan RG, Link TM., Curr. Opin. Microbiol. 10(2), 2007
PMID: 17395525
Coincident Hfq binding and RNase E cleavage sites on mRNA and small regulatory RNAs.
Moll I, Afonyushkin T, Vytvytska O, Kaberdin VR, Blasi U., RNA 9(11), 2003
PMID: 14561880
Moll I, Afonyushkin T, Vytvytska O, Kaberdin VR, Blasi U., RNA 9(11), 2003
PMID: 14561880
Coupled degradation of a small regulatory RNA and its mRNA targets in Escherichia coli.
Masse E, Escorcia FE, Gottesman S., Genes Dev. 17(19), 2003
PMID: 12975324
Masse E, Escorcia FE, Gottesman S., Genes Dev. 17(19), 2003
PMID: 12975324
The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.
Carpousis AJ., Annu. Rev. Microbiol. 61(), 2007
PMID: 17447862
Carpousis AJ., Annu. Rev. Microbiol. 61(), 2007
PMID: 17447862
Mechanism of RNA silencing by Hfq-binding small RNAs.
Aiba H., Curr. Opin. Microbiol. 10(2), 2007
PMID: 17383928
Aiba H., Curr. Opin. Microbiol. 10(2), 2007
PMID: 17383928
The expression of nifA in Azorhizobium caulinodans requires a gene product homologous to Escherichia coli HF-I, an RNA-binding protein involved in the replication of phage Q beta RNA.
Kaminski PA, Desnoues N, Elmerich C., Proc. Natl. Acad. Sci. U.S.A. 91(11), 1994
PMID: 8197116
Kaminski PA, Desnoues N, Elmerich C., Proc. Natl. Acad. Sci. U.S.A. 91(11), 1994
PMID: 8197116
The Brucella abortus host factor I (HF-I) protein contributes to stress resistance during stationary phase and is a major determinant of virulence in mice.
Robertson GT, Roop RM Jr., Mol. Microbiol. 34(4), 1999
PMID: 10564509
Robertson GT, Roop RM Jr., Mol. Microbiol. 34(4), 1999
PMID: 10564509
RNase III processing of intervening sequences found in helix 9 of 23S rRNA in the alpha subclass of Proteobacteria.
Evguenieva-Hackenberg E, Klug G., J. Bacteriol. 182(17), 2000
PMID: 10940010
Evguenieva-Hackenberg E, Klug G., J. Bacteriol. 182(17), 2000
PMID: 10940010
RNase J is involved in the 5'-end maturation of 16S rRNA and 23S rRNA in Sinorhizobium meliloti.
Madhugiri R, Evguenieva-Hackenberg E., FEBS Lett. 583(14), 2009
PMID: 19540834
Madhugiri R, Evguenieva-Hackenberg E., FEBS Lett. 583(14), 2009
PMID: 19540834
New gentamicin-resistance and lacZ promoter-probe cassettes suitable for insertion mutagenesis and generation of transcriptional fusions.
Becker A, Schmidt M, Jager W, Puhler A., Gene 162(1), 1995
PMID: 7557413
Becker A, Schmidt M, Jager W, Puhler A., Gene 162(1), 1995
PMID: 7557413
6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter.
Barrick JE, Sudarsan N, Weinberg Z, Ruzzo WL, Breaker RR., RNA 11(5), 2005
PMID: 15811922
Barrick JE, Sudarsan N, Weinberg Z, Ruzzo WL, Breaker RR., RNA 11(5), 2005
PMID: 15811922
Two distinct types of 6S RNA in Prochlorococcus.
Axmann IM, Holtzendorff J, Voss B, Kensche P, Hess WR., Gene 406(1-2), 2007
PMID: 17640832
Axmann IM, Holtzendorff J, Voss B, Kensche P, Hess WR., Gene 406(1-2), 2007
PMID: 17640832
Concentrations of 4.5S RNA and Ffh protein in Escherichia coli: the stability of Ffh protein is dependent on the concentration of 4.5S RNA.
Jensen CG, Pedersen S., J. Bacteriol. 176(23), 1994
PMID: 7525539
Jensen CG, Pedersen S., J. Bacteriol. 176(23), 1994
PMID: 7525539
Depletion of Escherichia coli 4.5S RNA leads to an increase in the amount of protein elongation factor EF-G associated with ribosomes.
Nakamura K, Fujii Y, Shibata T, Yamane K., Eur. J. Biochem. 259(1-2), 1999
PMID: 9914538
Nakamura K, Fujii Y, Shibata T, Yamane K., Eur. J. Biochem. 259(1-2), 1999
PMID: 9914538
RNA degradation in Archaea and Gram-negative bacteria different from Escherichia coli.
Evguenieva-Hackenberg E, Klug G., Prog Mol Biol Transl Sci 85(), 2009
PMID: 19215775
Evguenieva-Hackenberg E, Klug G., Prog Mol Biol Transl Sci 85(), 2009
PMID: 19215775
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