Positive transcriptional control of the pyridoxal phosphate biosynthesis genes pdxST by the MocR-type regulator PdxR of Corynebacterium glutamicum ATCC 13032

Jochmann N, Götker S, Tauch A (2011)
Microbiology 157(1): 77-88.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Abstract / Bemerkung
The pdxR (cg0897) gene of Corynebacterium glutamicum ATCC 1 3032 encodes a regulatory protein belonging to the MocR subfamily of GntR-type transcription regulators and consisting of an amino-terminal winged helix turn helix DNA-binding domain and a carboxy-terminal aminotransferase-like domain. A defined deletion in the pdxR gene resulted in the decreased expression of the divergently orientated pdxST genes coding for the subunits of pyridoxal 5'-phosphate synthase. The pdxST mutant C. glutamicum NJ0898 and the pdxR mutant C. glutamicum AMH17 showed vitamin B-6 auxotrophy that was restored by supplementing the growth medium with either pyridoxal, pyridoxal 5'-phosphate or pyridoxamine. The genetic organization of the 89 bp pdxR pdxST intergenic region was elucidated by mapping the 5' ends of the respective transcripts, followed by detection of typical promoter sequences. Bioinformatic pattern searches and comparative genomics revealed three DNA motifs with the consensus sequence AAAGTGGW(-/T)CTA, overlapping the deduced promoter sequences and serving as candidate DNA-binding sites for PdxR. DNA band shift assays with the purified PdxR protein demonstrated the specific binding of the transcription regulator to double-stranded 40-mer sequences containing the detected motifs, thereby confirming the direct regulatory role of PdxR in activating the expression of the pdxST genes.
Erscheinungsjahr
2011
Zeitschriftentitel
Microbiology
Band
157
Ausgabe
1
Seite(n)
77-88
ISSN
1350-0872
eISSN
1465-2080
Page URI
https://pub.uni-bielefeld.de/record/2003316

Zitieren

Jochmann N, Götker S, Tauch A. Positive transcriptional control of the pyridoxal phosphate biosynthesis genes pdxST by the MocR-type regulator PdxR of Corynebacterium glutamicum ATCC 13032. Microbiology. 2011;157(1):77-88.
Jochmann, N., Götker, S., & Tauch, A. (2011). Positive transcriptional control of the pyridoxal phosphate biosynthesis genes pdxST by the MocR-type regulator PdxR of Corynebacterium glutamicum ATCC 13032. Microbiology, 157(1), 77-88. https://doi.org/10.1099/mic.0.044818-0
Jochmann, Nina, Götker, Susanne, and Tauch, Andreas. 2011. “Positive transcriptional control of the pyridoxal phosphate biosynthesis genes pdxST by the MocR-type regulator PdxR of Corynebacterium glutamicum ATCC 13032”. Microbiology 157 (1): 77-88.
Jochmann, N., Götker, S., and Tauch, A. (2011). Positive transcriptional control of the pyridoxal phosphate biosynthesis genes pdxST by the MocR-type regulator PdxR of Corynebacterium glutamicum ATCC 13032. Microbiology 157, 77-88.
Jochmann, N., Götker, S., & Tauch, A., 2011. Positive transcriptional control of the pyridoxal phosphate biosynthesis genes pdxST by the MocR-type regulator PdxR of Corynebacterium glutamicum ATCC 13032. Microbiology, 157(1), p 77-88.
N. Jochmann, S. Götker, and A. Tauch, “Positive transcriptional control of the pyridoxal phosphate biosynthesis genes pdxST by the MocR-type regulator PdxR of Corynebacterium glutamicum ATCC 13032”, Microbiology, vol. 157, 2011, pp. 77-88.
Jochmann, N., Götker, S., Tauch, A.: Positive transcriptional control of the pyridoxal phosphate biosynthesis genes pdxST by the MocR-type regulator PdxR of Corynebacterium glutamicum ATCC 13032. Microbiology. 157, 77-88 (2011).
Jochmann, Nina, Götker, Susanne, and Tauch, Andreas. “Positive transcriptional control of the pyridoxal phosphate biosynthesis genes pdxST by the MocR-type regulator PdxR of Corynebacterium glutamicum ATCC 13032”. Microbiology 157.1 (2011): 77-88.

22 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

The MocR-like transcription factors: pyridoxal 5'-phosphate-dependent regulators of bacterial metabolism.
Tramonti A, Nardella C, di Salvo ML, Pascarella S, Contestabile R., FEBS J 285(21), 2018
PMID: 29974999
Vitamin B₆ and Its Role in Cell Metabolism and Physiology.
Parra M, Stahl S, Hellmann H., Cells 7(7), 2018
PMID: 30037155
Vitamin B6 metabolism in microbes and approaches for fermentative production.
Rosenberg J, Ischebeck T, Commichau FM., Biotechnol Adv 35(1), 2017
PMID: 27890703
Negative Regulation of Ectoine Uptake and Catabolism in Sinorhizobium meliloti: Characterization of the EhuR Gene.
Yu Q, Cai H, Zhang Y, He Y, Chen L, Merritt J, Zhang S, Dong Z., J Bacteriol 199(1), 2017
PMID: 27795315
Salmonella typhimurium PtsJ is a novel MocR-like transcriptional repressor involved in regulating the vitamin B6 salvage pathway.
Tramonti A, Milano T, Nardella C, di Salvo ML, Pascarella S, Contestabile R., FEBS J 284(3), 2017
PMID: 27987384
PLP and GABA trigger GabR-mediated transcription regulation in Bacillus subtilis via external aldimine formation.
Wu R, Sanishvili R, Belitsky BR, Juncosa JI, Le HV, Lehrer HJ, Farley M, Silverman RB, Petsko GA, Ringe D, Liu D., Proc Natl Acad Sci U S A 114(15), 2017
PMID: 28348215
Temporal Regulation of a Salmonella Typhimurium Virulence Factor by the Transcriptional Regulator YdcR.
Liu Y, Liu Q, Qi L, Ding T, Wang Z, Fu J, Hu M, Li M, Song J, Liu X., Mol Cell Proteomics 16(9), 2017
PMID: 28674150
A Bioinformatics Analysis Reveals a Group of MocR Bacterial Transcriptional Regulators Linked to a Family of Genes Coding for Membrane Proteins.
Milano T, Angelaccio S, Tramonti A, Di Salvo ML, Contestabile R, Pascarella S., Biochem Res Int 2016(), 2016
PMID: 27446613
Structural properties of the linkers connecting the N- and C- terminal domains in the MocR bacterial transcriptional regulators.
Milano T, Angelaccio S, Tramonti A, Di Salvo ML, Contestabile R, Pascarella S., Biochim Open 3(), 2016
PMID: 29450126
Role of the aminotransferase domain in Bacillus subtilis GabR, a pyridoxal 5'-phosphate-dependent transcriptional regulator.
Okuda K, Kato S, Ito T, Shiraki S, Kawase Y, Goto M, Kawashima S, Hemmi H, Fukada H, Yoshimura T., Mol Microbiol 95(2), 2015
PMID: 25388514
Deficiency of PdxR in Streptococcus mutans affects vitamin B6 metabolism, acid tolerance response and biofilm formation.
Liao S, Bitoun JP, Nguyen AH, Bozner D, Yao X, Wen ZT., Mol Oral Microbiol 30(4), 2015
PMID: 25421565
Molecular mechanism of PdxR – a transcriptional activator involved in the regulation of vitamin B6 biosynthesis in the probiotic bacterium Bacillus clausii.
Tramonti A, Fiascarelli A, Milano T, di Salvo ML, Nogués I, Pascarella S, Contestabile R., FEBS J 282(15), 2015
PMID: 26059598
A new member of MocR/GabR-type PLP-binding regulator of D-alanyl-D-alanine ligase in Brevibacillus brevis.
Takenaka T, Ito T, Miyahara I, Hemmi H, Yoshimura T., FEBS J 282(21), 2015
PMID: 26279274

39 References

Daten bereitgestellt von Europe PubMed Central.

Microarray studies reveal a 'differential response' to moderate or severe heat shock of the HrcA- and HspR-dependent systems in Corynebacterium glutamicum.
Barreiro C, Nakunst D, Huser AT, de Paz HD, Kalinowski J, Martin JF., Microbiology (Reading, Engl.) 155(Pt 2), 2009
PMID: 19202085
The transcriptional regulatory network of the amino acid producer Corynebacterium glutamicum.
Brinkrolf K, Brune I, Tauch A., J. Biotechnol. 129(2), 2006
PMID: 17227685
The IclR-type transcriptional repressor LtbR regulates the expression of leucine and tryptophan biosynthesis genes in the amino acid producer Corynebacterium glutamicum.
Brune I, Jochmann N, Brinkrolf K, Huser AT, Gerstmeir R, Eikmanns BJ, Kalinowski J, Puhler A, Tauch A., J. Bacteriol. 189(7), 2007
PMID: 17259312
Searching for patterns in genomic data.
Dsouza M, Larsen N, Overbeek R., Trends Genet. 13(12), 1997
PMID: 9433140
Differential plasmid rescue from transgenic mouse DNAs into Escherichia coli methylation-restriction mutants.
Grant SG, Jessee J, Bloom FR, Hanahan D., Proc. Natl. Acad. Sci. U.S.A. 87(12), 1990
PMID: 2162051

AUTHOR UNKNOWN, Gene 77(), 1989
The Corynebacterium glutamicum genome: features and impacts on biotechnological processes.
Ikeda M, Nakagawa S., Appl. Microbiol. Biotechnol. 62(2-3), 2003
PMID: 12743753
Genetic makeup of the Corynebacterium glutamicum LexA regulon deduced from comparative transcriptomics and in vitro DNA band shift assays.
Jochmann N, Kurze AK, Czaja LF, Brinkrolf K, Brune I, Huser AT, Hansmeier N, Puhler A, Borovok I, Tauch A., Microbiology (Reading, Engl.) 155(Pt 5), 2009
PMID: 19372162
The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins.
Kalinowski J, Bathe B, Bartels D, Bischoff N, Bott M, Burkovski A, Dusch N, Eggeling L, Eikmanns BJ, Gaigalat L, Goesmann A, Hartmann M, Huthmacher K, Kramer R, Linke B, McHardy AC, Meyer F, Mockel B, Pfefferle W, Puhler A, Rey DA, Ruckert C, Rupp O, Sahm H, Wendisch VF, Wiegrabe I, Tauch A., J. Biotechnol. 104(1-3), 2003
PMID: 12948626
REPuter: the manifold applications of repeat analysis on a genomic scale.
Kurtz S, Choudhuri JV, Ohlebusch E, Schleiermacher C, Stoye J, Giegerich R., Nucleic Acids Res. 29(22), 2001
PMID: 11713313
Clustal W and Clustal X version 2.0.
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, Valentin F, Wallace IM, Wilm A, Lopez R, Thompson JD, Gibson TJ, Higgins DG., Bioinformatics 23(21), 2007
PMID: 17846036

Magarvey, Microbiology (Reading, Engl.) 147(8), 2001
CDD: specific functional annotation with the Conserved Domain Database.
Marchler-Bauer A, Anderson JB, Chitsaz F, Derbyshire MK, DeWeese-Scott C, Fong JH, Geer LY, Geer RC, Gonzales NR, Gwadz M, He S, Hurwitz DI, Jackson JD, Ke Z, Lanczycki CJ, Liebert CA, Liu C, Lu F, Lu S, Marchler GH, Mullokandov M, Song JS, Tasneem A, Thanki N, Yamashita RA, Zhang D, Zhang N, Bryant SH., Nucleic Acids Res. 37(Database issue), 2008
PMID: 18984618
Functional analysis of all aminotransferase proteins inferred from the genome sequence of Corynebacterium glutamicum.
Marienhagen J, Kennerknecht N, Sahm H, Eggeling L., J. Bacteriol. 187(22), 2005
PMID: 16267288
The integrated microbial genomes (IMG) system.
Markowitz VM, Korzeniewski F, Palaniappan K, Szeto E, Werner G, Padki A, Zhao X, Dubchak I, Hugenholtz P, Anderson I, Lykidis A, Mavromatis K, Ivanova N, Kyrpides NC., Nucleic Acids Res. 34(Database issue), 2006
PMID: 16381883
Genome-based analysis of biosynthetic aminotransferase genes of Corynebacterium glutamicum.
McHardy AC, Tauch A, Ruckert C, Puhler A, Kalinowski J., J. Biotechnol. 104(1-3), 2003
PMID: 12948641
Promoters of Corynebacterium glutamicum.
Patek M, Nesvera J, Guyonvarch A, Reyes O, Leblon G., J. Biotechnol. 104(1-3), 2003
PMID: 12948648
Subdivision of the helix-turn-helix GntR family of bacterial regulators in the FadR, HutC, MocR, and YtrA subfamilies.
Rigali S, Derouaux A, Giannotta F, Dusart J., J. Biol. Chem. 277(15), 2001
PMID: 11756427

AUTHOR UNKNOWN, Gene 145(), 1994
The manifold of vitamin B6 dependent enzymes.
Schneider G, Kack H, Lindqvist Y., Structure 8(1), 2000
PMID: 10673430
PROSITE, a protein domain database for functional characterization and annotation.
Sigrist CJ, Cerutti L, de Castro E, Langendijk-Genevaux PS, Bulliard V, Bairoch A, Hulo N., Nucleic Acids Res. 38(Database issue), 2009
PMID: 19858104
Structure of a bacterial pyridoxal 5'-phosphate synthase complex.
Strohmeier M, Raschle T, Mazurkiewicz J, Rippe K, Sinning I, Fitzpatrick TB, Tews I., Proc. Natl. Acad. Sci. U.S.A. 103(51), 2006
PMID: 17159152
Evolution of vitamin B6 (pyridoxine) metabolism by gain and loss of genes.
Tanaka T, Tateno Y, Gojobori T., Mol. Biol. Evol. 22(2), 2004
PMID: 15483325
Corynebacterium glutamicum DNA is subjected to methylation-restriction in Escherichia coli.
Tauch A, Kirchner O, Wehmeier L, Kalinowski J, Puhler A., FEMS Microbiol. Lett. 123(3), 1994
PMID: 7988915

AUTHOR UNKNOWN, Plasmid 34(), 1995
Efficient electrotransformation of corynebacterium diphtheriae with a mini-replicon derived from the Corynebacterium glutamicum plasmid pGA1.
Tauch A, Kirchner O, Loffler B, Gotker S, Puhler A, Kalinowski J., Curr. Microbiol. 45(5), 2002
PMID: 12232668
The GntR-like regulator TauR activates expression of taurine utilization genes in Rhodobacter capsulatus.
Wiethaus J, Schubert B, Pfander Y, Narberhaus F, Masepohl B., J. Bacteriol. 190(2), 2007
PMID: 17981966
Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®
Quellen

PMID: 20847010
PubMed | Europe PMC

Suchen in

Google Scholar