PUB - Publikationen an der Universität Bielefeld

First genome sequencing and comparative analyses of Corynebacterium pseudotuberculosis strains from Mexico.
Parise D, Parise MTD, Viana MVC, Muñoz-Bucio AV, Cortés-Pérez YA, Arellano-Reynoso B, Díaz-Aparicio E, Dorella FA, Pereira FL, Carvalho AF, Figueiredo HCP, Ghosh P, Barh D, Gomide ACP, Azevedo VAC., Stand Genomic Sci 13(), 2018
PMID: 30338024

Exploration of Nitrate Reductase Metabolic Pathway in Corynebacterium pseudotuberculosis.
Almeida S, Sousa C, Abreu V, Diniz C, Dorneles EM, Lage AP, Barh D, Azevedo V., Int J Genomics 2017(), 2017
PMID: 28316974

Comparative genomic analysis between Corynebacterium pseudotuberculosis strains isolated from buffalo.
Viana MVC, Figueiredo H, Ramos R, Guimarães LC, Pereira FL, Dorella FA, Selim SAK, Salaheldean M, Silva A, Wattam AR, Azevedo V., PLoS One 12(4), 2017
PMID: 28445543

Recombinant esterase from Corynebacterium pseudotuberculosis in DNA and subunit recombinant vaccines partially protects mice against challenge.
Brum AA, Rezende AFS, Brilhante FS, Collares T, Begnine K, Seixas FK, Collares TV, Dellagostin OA, Azevedo V, Santos A, Portela RW, Borsuk S., J Med Microbiol 66(5), 2017
PMID: 28516859

Identification of new Corynebacterium pseudotuberculosis antigens by immunoscreening of gene expression library.
Galvão CE, Fragoso SP, de Oliveira CE, Forner O, Pereira RRB, Soares CO, Rosinha GMS., BMC Microbiol 17(1), 2017
PMID: 28934943

In silico identification of essential proteins in Corynebacterium pseudotuberculosis based on protein-protein interaction networks.
Folador EL, de Carvalho PV, Silva WM, Ferreira RS, Silva A, Gromiha M, Ghosh P, Barh D, Azevedo V, Röttger R., BMC Syst Biol 10(1), 2016
PMID: 27814699

Mutations in HSP70-2 gene change the susceptibility to clinical mastitis in Chinese Holstein.
Huang P, Lu C, Li J, Xu J, Liu Z, Wang Q, Wang Z, Huo J, Li H, Teng Y, Cai Y., Gene 559(1), 2015
PMID: 25592821

Corynebacterium pseudotuberculosis Pneumonia in a Veterinary Student Infected During Laboratory Work.
Heggelund L, Gaustad P, Håvelsrud OE, Blom J, Borgen L, Sundset A, Sørum H, Frøland SS., Open Forum Infect Dis 2(2), 2015
PMID: 26380345

Evaluation of ERIC-PCR as genotyping method for Corynebacterium pseudotuberculosis isolates.
Dorneles EM, Santana JA, Ribeiro D, Dorella FA, Guimarães AS, Moawad MS, Selim SA, Garaldi AL, Miyoshi A, Ribeiro MG, Gouveia AM, Azevedo V, Heinemann MB, Lage AP., PLoS One 9(6), 2014
PMID: 24901343

A gene-by-gene population genomics platform: de novo assembly, annotation and genealogical analysis of 108 representative Neisseria meningitidis genomes.
Bratcher HB, Corton C, Jolley KA, Parkhill J, Maiden MC., BMC Genomics 15(), 2014
PMID: 25523208

The pan-genome of the animal pathogen Corynebacterium pseudotuberculosis reveals differences in genome plasticity between the biovar ovis and equi strains.
Soares SC, Silva A, Trost E, Blom J, Ramos R, Carneiro A, Ali A, Santos AR, Pinto AC, Diniz C, Barbosa EG, Dorella FA, Aburjaile F, Rocha FS, Nascimento KK, Guimarães LC, Almeida S, Hassan SS, Bakhtiar SM, Pereira UP, Abreu VA, Schneider MP, Miyoshi A, Tauch A, Azevedo V., PLoS One 8(1), 2013
PMID: 23342011

Cell envelope of corynebacteria: structure and influence on pathogenicity.
Burkovski A., ISRN Microbiol 2013(), 2013
PMID: 23724339

Fine de novo sequencing of a fungal genome using only SOLiD short read data: verification on Aspergillus oryzae RIB40.
Umemura M, Koyama Y, Takeda I, Hagiwara H, Ikegami T, Koike H, Machida M., PLoS One 8(5), 2013
PMID: 23667655

High efficiency application of a mate-paired library from next-generation sequencing to postlight sequencing: Corynebacterium pseudotuberculosis as a case study for microbial de novo genome assembly.
Ramos RT, Carneiro AR, de Castro Soares S, Barbosa S, Varuzza L, Orabona G, Tauch A, Azevedo V, Schneider MP, Silva A., J Microbiol Methods 95(3), 2013
PMID: 23792707

High throughput sequencing methods and analysis for microbiome research.
Di Bella JM, Bao Y, Gloor GB, Burton JP, Reid G., J Microbiol Methods 95(3), 2013
PMID: 24029734

Phylogenetic framework and molecular signatures for the main clades of the phylum Actinobacteria.
Gao B, Gupta RS., Microbiol Mol Biol Rev 76(1), 2012
PMID: 22390973

A Scheduling Algorithm for Computational Grids that Minimizes Centralized Processing in Genome Assembly of Next-Generation Sequencing Data.
Lima J, Cerdeira LT, Bol E, Schneider MP, Silva A, Azevedo V, Abelém AJ., Front Genet 3(), 2012
PMID: 22461785

Evaluation of invertebrate infection models for pathogenic corynebacteria.
Ott L, McKenzie A, Baltazar MT, Britting S, Bischof A, Burkovski A, Hoskisson PA., FEMS Immunol Med Microbiol 65(3), 2012
PMID: 22443092

The core stimulon of Corynebacterium pseudotuberculosis strain 1002 identified using ab initio methodologies.
Pinto AC, Ramos RT, Silva WM, Rocha FS, Barbosa S, Miyoshi A, Schneider MP, Silva A, Azevedo V., Integr Biol (Camb) 4(7), 2012
PMID: 22641428

Complete genome sequence of Corynebacterium pseudotuberculosis strain Cp267, isolated from a llama.
Lopes T, Silva A, Thiago R, Carneiro A, Dorella FA, Rocha FS, dos Santos AR, Lima AR, Guimarães LC, Barbosa EG, Ribeiro D, Fiaux KK, Diniz CA, de Abreu VA, de Almeida SS, Hassan SS, Ali A, Bakhtiar SM, Aburjaile FF, Pinto AC, Soares Sde C, Pereira Ude P, Schneider MP, Miyoshi A, Edman J, Spier S, Azevedo V., J Bacteriol 194(13), 2012
PMID: 22689248

Simplifier: a web tool to eliminate redundant NGS contigs.
Ramos RT, Carneiro AR, Azevedo V, Schneider MP, Barh D, Silva A., Bioinformation 8(20), 2012
PMID: 23275695

The Corynebacterium pseudotuberculosis in silico predicted pan-exoproteome.
Santos AR, Carneiro A, Gala-García A, Pinto A, Barh D, Barbosa E, Aburjaile F, Dorella F, Rocha F, Guimarães L, Zurita-Turk M, Ramos R, Almeida S, Soares S, Pereira U, Abreu VC, Silva A, Miyoshi A, Azevedo V., BMC Genomics 13 Suppl 5(), 2012
PMID: 23095951

Genome sequence of the Corynebacterium pseudotuberculosis Cp316 strain, isolated from the abscess of a Californian horse.
Ramos RT, Silva A, Carneiro AR, Pinto AC, Soares Sde C, Santos AR, Almeida SS, Guimarães LC, Aburjaile FF, Barbosa EG, Dorella FA, Rocha FS, Cerdeira LT, Barbosa MS, Tauch A, Edman J, Spier S, Miyoshi A, Schneider MP, Azevedo V., J Bacteriol 194(23), 2012
PMID: 23144380

Evidence for reductive genome evolution and lateral acquisition of virulence functions in two Corynebacterium pseudotuberculosis strains.
Ruiz JC, D'Afonseca V, Silva A, Ali A, Pinto AC, Santos AR, Rocha AA, Lopes DO, Dorella FA, Pacheco LG, Costa MP, Turk MZ, Seyffert N, Moraes PM, Soares SC, Almeida SS, Castro TL, Abreu VA, Trost E, Baumbach J, Tauch A, Schneider MP, McCulloch J, Cerdeira LT, Ramos RT, Zerlotini A, Dominitini A, Resende DM, Coser EM, Oliveira LM, Pedrosa AL, Vieira CU, Guimarães CT, Bartholomeu DC, Oliveira DM, Santos FR, Rabelo ÉM, Lobo FP, Franco GR, Costa AF, Castro IM, Dias SR, Ferro JA, Ortega JM, Paiva LV, Goulart LR, Almeida JF, Ferro MI, Carneiro NP, Falcão PR, Grynberg P, Teixeira SM, Brommonschenkel S, Oliveira SC, Meyer R, Moore RJ, Miyoshi A, Oliveira GC, Azevedo V., PLoS One 6(4), 2011
PMID: 21533164

Comparative analysis of two complete Corynebacterium ulcerans genomes and detection of candidate virulence factors.
Trost E, Al-Dilaimi A, Papavasiliou P, Schneider J, Viehoever P, Burkovski A, Soares SC, Almeida SS, Dorella FA, Miyoshi A, Azevedo V, Schneider MP, Silva A, Santos CS, Santos LS, Sabbadini P, Dias AA, Hirata R, Mattos-Guaraldi AL, Tauch A., BMC Genomics 12(), 2011
PMID: 21801446