Strong correlation between cross-amplification success and genetic distance across all members of 'True Salamanders' (Amphibia: Salamandridae) revealed by Salamandra salamandra-specific microsatellite loci

Hendrix R, Hauswaldt JS, Veith M, Steinfartz S (2010)
MOLECULAR ECOLOGY RESOURCES 10(6): 1038-1047.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
Hendrix, RalfUniBi; Hauswaldt, J. Susanne; Veith, Michael; Steinfartz, SebastianUniBi
Abstract / Bemerkung
The unpredictable and low cross-amplification success of microsatellite loci tested for congeneric amphibian species has mainly been explained by the size and complexity of amphibian genomes, but also by taxonomy that is inconsistent with phylogenetic relationships among taxa. Here, we tested whether the cross-amplification success of nine new and 11 published microsatellite loci cloned for an amphibian source species, the fire salamander (Salamandra salamandra), correlated with the genetic distance across all members of True Salamanders (genera Chioglossa, Lyciasalamandra, Mertensiella and Salamandra that form a monophyletic clade within the family of Salamandridae) serving as target species. Cross-amplification success varied strongly among the species and showed a highly significant negative relationship with genetic distance and amplification success. Even though lineages of S. salamandra and Lyciasalamndra have separated more than 30 Ma, a within genus amplification success rate of 65% was achieved for species of Lyciasalamandra thus demonstrating that an efficient cross-species amplification of microsatellite loci in amphibians is feasible even across large evolutionary distances. A decrease in genome size, on the other hand, paralleled also a decrease in amplified loci and therefore contradicted previous results and expectations that amplification success should increase with a decrease in genome size. However, in line with other studies, our comprehensive dataset clearly shows that cross-amplification success of microsatellite loci is well explained by phylogenetic divergence between species. As taxonomic classifications on the species and genus level do not necessarily mirror phylogenetic divergence between species, the pure belonging of species to the same taxonomic units (i.e. species or genus) might be less useful to predict cross-amplification success of microsatellite loci between such species.
Stichworte
True Salamanders; Salamandridae; genome size; cross-amplification; microsatellite loci; neutral genetic; distance; Salamandra salamandra
Erscheinungsjahr
2010
Zeitschriftentitel
MOLECULAR ECOLOGY RESOURCES
Band
10
Ausgabe
6
Seite(n)
1038-1047
ISSN
1755-098X
Page URI
https://pub.uni-bielefeld.de/record/1929678

Zitieren

Hendrix R, Hauswaldt JS, Veith M, Steinfartz S. Strong correlation between cross-amplification success and genetic distance across all members of 'True Salamanders' (Amphibia: Salamandridae) revealed by Salamandra salamandra-specific microsatellite loci. MOLECULAR ECOLOGY RESOURCES. 2010;10(6):1038-1047.
Hendrix, R., Hauswaldt, J. S., Veith, M., & Steinfartz, S. (2010). Strong correlation between cross-amplification success and genetic distance across all members of 'True Salamanders' (Amphibia: Salamandridae) revealed by Salamandra salamandra-specific microsatellite loci. MOLECULAR ECOLOGY RESOURCES, 10(6), 1038-1047. doi:10.1111/j.1755-0998.2010.02861.x
Hendrix, R., Hauswaldt, J. S., Veith, M., and Steinfartz, S. (2010). Strong correlation between cross-amplification success and genetic distance across all members of 'True Salamanders' (Amphibia: Salamandridae) revealed by Salamandra salamandra-specific microsatellite loci. MOLECULAR ECOLOGY RESOURCES 10, 1038-1047.
Hendrix, R., et al., 2010. Strong correlation between cross-amplification success and genetic distance across all members of 'True Salamanders' (Amphibia: Salamandridae) revealed by Salamandra salamandra-specific microsatellite loci. MOLECULAR ECOLOGY RESOURCES, 10(6), p 1038-1047.
R. Hendrix, et al., “Strong correlation between cross-amplification success and genetic distance across all members of 'True Salamanders' (Amphibia: Salamandridae) revealed by Salamandra salamandra-specific microsatellite loci”, MOLECULAR ECOLOGY RESOURCES, vol. 10, 2010, pp. 1038-1047.
Hendrix, R., Hauswaldt, J.S., Veith, M., Steinfartz, S.: Strong correlation between cross-amplification success and genetic distance across all members of 'True Salamanders' (Amphibia: Salamandridae) revealed by Salamandra salamandra-specific microsatellite loci. MOLECULAR ECOLOGY RESOURCES. 10, 1038-1047 (2010).
Hendrix, Ralf, Hauswaldt, J. Susanne, Veith, Michael, and Steinfartz, Sebastian. “Strong correlation between cross-amplification success and genetic distance across all members of 'True Salamanders' (Amphibia: Salamandridae) revealed by Salamandra salamandra-specific microsatellite loci”. MOLECULAR ECOLOGY RESOURCES 10.6 (2010): 1038-1047.

23 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Shedding Light on a Secretive Tertiary urodelean Relict: Hynobiid salamanders (Paradactylodon persicus s.l.) from Iran, Illuminated by Phylogeographic, Developmental and Transcriptomic Data.
Stöck M, Fakharzadeh F, Kuhl H, Rozenblut-Kościsty B, Leinweber S, Patel R, Ebrahimi M, Voitel S, Schmidtler JF, Kami HG, Ogielska M, Förster DW., Genes (Basel) 10(4), 2019
PMID: 31003559
Post-epizootic salamander persistence in a disease-free refugium suggests poor dispersal ability of Batrachochytrium salamandrivorans.
Spitzen-van der Sluijs A, Stegen G, Bogaerts S, Canessa S, Steinfartz S, Janssen N, Bosman W, Pasmans F, Martel A., Sci Rep 8(1), 2018
PMID: 29491409
Variable Molecular Markers for the Order Mantophasmatodea (Insecta).
Dool SE, Künzel S, Haase M, Picker MD, Eberhard MJB., J Hered 109(4), 2018
PMID: 29206981
Islands within an island: Population genetic structure of the endemic Sardinian newt, Euproctus platycephalus.
Ball SE, Bovero S, Sotgiu G, Tessa G, Angelini C, Bielby J, Durrant C, Favelli M, Gazzaniga E, Garner TW., Ecol Evol 7(4), 2017
PMID: 28303189
Species identification and comparative population genetics of four coastal houndsharks based on novel NGS-mined microsatellites.
Maduna SN, Rossouw C, da Silva C, Soekoe M, Bester-van der Merwe AE., Ecol Evol 7(5), 2017
PMID: 28261458
Differentiation of movement behaviour in an adaptively diverging salamander population.
Hendrix R, Schmidt BR, Schaub M, Krause ET, Steinfartz S., Mol Ecol 26(22), 2017
PMID: 28881403
Ecological connectivity assessment in a strongly structured fire salamander (Salamandra salamandra) population.
Bani L, Pisa G, Luppi M, Spilotros G, Fabbri E, Randi E, Orioli V., Ecol Evol 5(16), 2015
PMID: 26380679
Landscape influences on dispersal behaviour: a theoretical model and empirical test using the fire salamander, Salamandra infraimmaculata.
Kershenbaum A, Blank L, Sinai I, Merilä J, Blaustein L, Templeton AR., Oecologia 175(2), 2014
PMID: 24648023
Limited usefulness of microsatellite markers from the malaria vector Anopheles gambiae when applied to the closely related species Anopheles melas.
Deitz KC, Reddy VP, Reddy MR, Satyanarayanah N, Lindsey MW, Overgaard HJ, Jawara M, Caccone A, Slotman MA., J Hered 103(4), 2012
PMID: 22593601
Isolation and characterization of cross-amplification microsatellite panels for species of Procapra (Bovidae; Antilopinae).
Chen J, Li C, Yang J, Luo Z, Tang S, Li F, Li C, Liu B, Jiang Z., Int J Mol Sci 13(7), 2012
PMID: 22942736
Cross-species testing and utility of microsatellite loci in Indirana frogs.
Nair A, Gopalan SV, George S, Kumar KS, Merilä J., BMC Res Notes 5(), 2012
PMID: 22838958
Single-nucleotide polymorphism (SNP) discovery and applications of SNP genotyping in nonmodel organisms.
Seeb JE, Carvalho G, Hauser L, Naish K, Roberts S, Seeb LW., Mol Ecol Resour 11 Suppl 1(), 2011
PMID: 21429158

39 References

Daten bereitgestellt von Europe PubMed Central.

Conservation genetics of amphibians.
Beebee TJ., Heredity (Edinb) 95(6), 2005
PMID: 16106261
The amphibian tree of life
Frost, Bulletin of the American Museum of Natural History 297(), 2006
Population structure of Columbia spotted frogs (Rana luteiventris) is strongly affected by the landscape.
Funk WC, Blouin MS, Corn PS, Maxell BA, Pilliod DS, Amish S, Allendorf FW., Mol. Ecol. 14(2), 2005
PMID: 15660939
Di- and tetranucleotide microsatellite markers for the Alpine newt (Triturus alpestris): characterization and cross-priming in five congeners
Garner, Molecular Ecology Notes 3(), 2003
Past: paleontological statistics software package for education and data analysis
Hammer, Palaeontologia Electronica 4(), 2001
Eight new tetranucleotide microsatellite loci for the agile frog (Rana dalmatina).
Hauswaldt JS, Fuessel J, Guenther J, Steinfartz S., Mol Ecol Resour 8(6), 2008
PMID: 21586075
Microsatellite markers in amphibian conservation genetics
Jehle, The Herpetological Journal 12(), 2002
Delineating fine-scale genetic units in amphibians: probing the primacy of ponds
Jehle, Conservation Genetics 6(), 2005
Genetic dissimilarity predicts paternity in the smooth newt (Lissotriton vulgaris)
Jehle, Conservation Genetics 6(), 2007
Topping off: a mechanism of first-male sperm precedence in a vertebrate.
Jones AG, Adams EM, Arnold SJ., Proc. Natl. Acad. Sci. U.S.A. 99(4), 2002
PMID: 11842198
Microsatellite loci in the crested newt (Triturus cristatus) and their utility in other newt taxa
Krupa, Conservation Genetics 3(), 2002
High degree of population subdivision in a widespread amphibian.
Palo JU, Schmeller DS, Laurila A, Primmer CR, Kuzmin SL, Merila J., Mol. Ecol. 13(9), 2004
PMID: 15315676
Susceptibility of Italian agile frog populations to an emerging strain of Ranavirus parallels population genetic diversity
Pearman, Ecology Letters 8(), 2005
A low rate of cross-species microsatellite amplification success in Ranid frogs
Primmer, Conservation Genetics 3(), 2002
A wide-range survey of cross-species microsatellite amplification in birds.
Primmer CR, Moller AP, Ellegren H., Mol. Ecol. 5(3), 1996
PMID: 8688957
Factors affecting avian cross-species microsatellite amplification
Primmer, Journal of Avian Biology 36(), 2005
Analyzing tables of statistical tests
Rice, Evolution 43(), 1998
Genepop’007: a complete re-implementation of the GENEPOP software for Windows and Linux
Rousset, Molecular Ecology Resources 8(), 2007

Rozen, 2000
Isolation and characterization of polymorphic tetranucleotide microsatellite loci in the Fire salamander Salamandra salamandra (Amphibia: Caudata)
Steinfartz, Molecular Ecology Notes 4(), 2004
Patterns of multiple paternity within and between annual reproduction cycles of the fire salamander (Salamandra salamandra) under natural conditions
Steinfartz, Journal of Zoology 268(), 2006
A Bayesian approach on molecules and behaviour: reconsidering evolutionary patterns in Triturus newts (Amphibia: Salamandridae)
Steinfartz, Journal of Experimental Zoology, Part B-Molecular and Developmental Evolution 308B(), 2007

Swofford, 2002
When non-monophyly results in taxonomic consequences - the case of Mertensiella within the Salamandridae (Amphibia: Urodela)
Veith, Salamandra 40(), 2004
A molecular assessment of phylogenetic relationships and lineage accumulation rates within the family Salamandridae (Amphibia, Caudata).
Weisrock DW, Papenfuss TJ, Macey JR, Litvinchuk SN, Polymeni R, Ugurtas IH, Zhao E, Jowkar H, Larson A., Mol. Phylogenet. Evol. 41(2), 2006
PMID: 16815049
Strategies for microsatellite isolation: a review.
Zane L, Bargelloni L, Patarnello T., Mol. Ecol. 11(1), 2002
PMID: 11903900
Phylogeny and biogeography of the family Salamandridae (Amphibia: Caudata) inferred from complete mitochondrial genomes.
Zhang P, Papenfuss TJ, Wake MH, Qu L, Wake DB., Mol. Phylogenet. Evol. 49(2), 2008
PMID: 18801447

Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®

Quellen

PMID: 21565114
PubMed | Europe PMC

Suchen in

Google Scholar