Reconstructing the evolutionary history of the radiation of the land snail genus Xerocrassa on Crete based on mitochondrial sequences and AFLP markers

Sauer J, Hausdorf B (2010)
BMC Evolutionary Biology 10(1): 299.

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Background: A non-adaptive radiation triggered by sexual selection resulted in ten endemic land snail species of the genus Xerocrassa on Crete. Only five of these species and a more widespread species are monophyletic in a mitochondrial gene tree. The reconstruction of the evolutionary history of such closely related species can be complicated by incomplete lineage sorting, introgression or inadequate taxonomy. To distinguish between the reasons for the nonmonophyly of several species in the mitochondrial gene tree we analysed nuclear AFLP markers. Results: Whereas six of the eleven morphologically delimited Xerocrassa species from Crete are monophyletic in the mitochondrial gene tree, nine of these species are monophyletic in the tree based on AFLP markers. Only two morphologically delimited species could not be distinguished with the multilocus data and might have diverged very recently or might represent extreme forms of a single species. The nonmonophyly of X. rhithymna with respect to X. kydonia is probably the result of incomplete lineage sorting, because there is no evidence for admixture in the AFLP data and the mitochondrial haplotype groups of these species coalesce deeply. The same is true for the main haplotype groups of X. mesostena. The nonmonophyly of X. franciscoi might be the result of mitochondrial introgression, because the coalescences of the haplotypes of this species with some X. mesostena haplotypes are shallow and there is admixture with neighbouring X. mesostena. Conclusion: The most likely causes for the nonmonophyly of species in the mitochondrial gene tree of the Xerocrassa radiation on Crete could be inferred using AFLP data by a combination of several criteria, namely the depth of the coalescences in the gene tree, the geographical distribution of shared genetic markers, and concordance with results of admixture analyses of nuclear multilocus markers. The strongly subdivided population structure increases the effective population size of land snail species and, thus, the likelihood of a long persistence of ancestral polymorphisms. Our study suggests that ancestral polymorphisms are a frequent cause for nonmonophyly of species with a strongly subdivided population structure in gene trees.
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BMC Evolutionary Biology
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10
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1
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299
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Sauer J, Hausdorf B. Reconstructing the evolutionary history of the radiation of the land snail genus Xerocrassa on Crete based on mitochondrial sequences and AFLP markers. BMC Evolutionary Biology. 2010;10(1): 299.
Sauer, J., & Hausdorf, B. (2010). Reconstructing the evolutionary history of the radiation of the land snail genus Xerocrassa on Crete based on mitochondrial sequences and AFLP markers. BMC Evolutionary Biology, 10(1), 299. doi:10.1186/1471-2148-10-299
Sauer, J., and Hausdorf, B. (2010). Reconstructing the evolutionary history of the radiation of the land snail genus Xerocrassa on Crete based on mitochondrial sequences and AFLP markers. BMC Evolutionary Biology 10:299.
Sauer, J., & Hausdorf, B., 2010. Reconstructing the evolutionary history of the radiation of the land snail genus Xerocrassa on Crete based on mitochondrial sequences and AFLP markers. BMC Evolutionary Biology, 10(1): 299.
J. Sauer and B. Hausdorf, “Reconstructing the evolutionary history of the radiation of the land snail genus Xerocrassa on Crete based on mitochondrial sequences and AFLP markers”, BMC Evolutionary Biology, vol. 10, 2010, : 299.
Sauer, J., Hausdorf, B.: Reconstructing the evolutionary history of the radiation of the land snail genus Xerocrassa on Crete based on mitochondrial sequences and AFLP markers. BMC Evolutionary Biology. 10, : 299 (2010).
Sauer, Jan, and Hausdorf, Bernhard. “Reconstructing the evolutionary history of the radiation of the land snail genus Xerocrassa on Crete based on mitochondrial sequences and AFLP markers”. BMC Evolutionary Biology 10.1 (2010): 299.
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Madeira PM, Chefaoui RM, Cunha RL, Moreira F, Dias S, Calado G, Castilho R., PeerJ 5(), 2017
PMID: 28321363
Diversification of Bromelioideae (Bromeliaceae) in the Brazilian Atlantic rainforest: A case study in Aechmea subgenus Ortgiesia.
Goetze M, Schulte K, Palma-Silva C, Zanella CM, Büttow MV, Capra F, Bered F., Mol Phylogenet Evol 98(), 2016
PMID: 26957015
Positive selection on panpulmonate mitogenomes provide new clues on adaptations to terrestrial life.
Romero PE, Weigand AM, Pfenninger M., BMC Evol Biol 16(1), 2016
PMID: 27549326
Speciation Progress: A Case Study on the Bushcricket Poecilimon veluchianus.
Eweleit L, Reinhold K, Sauer J., PLoS One 10(10), 2015
PMID: 26436732
Paraphyly and budding speciation in the hairy snail (Pulmonata, Hygromiidae).
Kruckenhauser L, Duda M, Bartel D, Sattmann H, Harl J, Kirchner S, Haring E., Zool Scr 43(3), 2014
PMID: 25170185
Spiders (Araneae) of Churchill, Manitoba: DNA barcodes and morphology reveal high species diversity and new Canadian records.
Blagoev GA, Nikolova NI, Sobel CN, Hebert PD, Adamowicz SJ., BMC Ecol 13(), 2013
PMID: 24279427
Mitochondrial phylogeny and biogeographic history of the Greek endemic land-snail genus Codringtonia Kobelt 1898 (Gastropoda, Pulmonata, Helicidae).
Kotsakiozi P, Parmakelis A, Giokas S, Papanikolaou I, Valakos ED., Mol Phylogenet Evol 62(2), 2012
PMID: 22142739
Concerted genetic, morphological and ecological diversification in Nacella limpets in the Magellanic Province.
González-Wevar CA, Nakano T, Cañete JI, Poulin E., Mol Ecol 20(9), 2011
PMID: 21418364

63 References

Daten bereitgestellt von Europe PubMed Central.

Species-Level paraphyly and polyphyly: frequency, causes, and consequences, with insights from animal mitochondrial DNA
AUTHOR UNKNOWN, 2003
Phylogenetic relationships of mitochondrial DNA under various demographic models of speciation
AUTHOR UNKNOWN, 1986
Phylogenetics and the origin of species.
Avise JC, Wollenberg K., Proc. Natl. Acad. Sci. U.S.A. 94(15), 1997
PMID: 9223259
Gene Trees in Species Trees
AUTHOR UNKNOWN, 1997
Mathematical consequences of the genealogical species concept.
Hudson RR, Coyne JA., Evolution 56(8), 2002
PMID: 12353748
Mitochondrial gene flow.
Takahata N, Slatkin M., Proc. Natl. Acad. Sci. U.S.A. 81(6), 1984
PMID: 6584909
Delimiting species in recent radiations.
Shaffer HB, Thomson RC., Syst. Biol. 56(6), 2007
PMID: 18066926
Persistence of neutral polymorphisms in Lake Victoria cichlid fish.
Nagl S, Tichy H, Mayer WE, Takahata N, Klein J., Proc. Natl. Acad. Sci. U.S.A. 95(24), 1998
PMID: 9826684
Phylogeny of a rapidly evolving clade: the cichlid fishes of Lake Malawi, East Africa.
Albertson RC, Markert JA, Danley PD, Kocher TD., Proc. Natl. Acad. Sci. U.S.A. 96(9), 1999
PMID: 10220426
Moorean tree snail survival revisited: a multi-island genealogical perspective.
Lee T, Burch JB, Coote T, Pearce-Kelly P, Hickman C, Meyer JY, O Foighil D., BMC Evol. Biol. 9(), 2009
PMID: 19686604
Mitochondrial introgression and incomplete lineage sorting through space and time: phylogenetics of crotaphytid lizards.
McGuire JA, Linkem CW, Koo MS, Hutchison DW, Lappin AK, Orange DI, Lemos-Espinal J, Riddle BR, Jaeger JR., Evolution 61(12), 2007
PMID: 17941840
Revision of the Helicellinae of Crete (Gastropoda: Hygromiidae)
AUTHOR UNKNOWN, 2009
AFLP: a new technique for DNA fingerprinting.
Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M., Nucleic Acids Res. 23(21), 1995
PMID: 7501463
How many clusters? Which clustering method? Answers via model-based cluster analysis
AUTHOR UNKNOWN, 1998
Species delimitation using dominant and codominant multilocus markers.
Hausdorf B, Hennig C., Syst. Biol. 59(5), 2010
PMID: 20693311
Inference of population structure using multilocus genotype data.
Pritchard JK, Stephens M, Donnelly P., Genetics 155(2), 2000
PMID: 10835412
Inference of population structure using multilocus genotype data: dominant markers and null alleles.
Falush D, Stephens M, Pritchard JK., Mol. Ecol. Notes 7(4), 2007
PMID: 18784791
Inference of population structure under a Dirichlet process model.
Huelsenbeck JP, Andolfatto P., Genetics 175(4), 2007
PMID: 17237522
Species abundance distributions: moving beyond single prediction theories to integration within an ecological framework.
McGill BJ, Etienne RS, Gray JS, Alonso D, Anderson MJ, Benecha HK, Dornelas M, Enquist BJ, Green JL, He F, Hurlbert AH, Magurran AE, Marquet PA, Maurer BA, Ostling A, Soykan CU, Ugland KI, White EP., Ecol. Lett. 10(10), 2007
PMID: 17845298
Difficulties in detecting hybridization.
Holder MT, Anderson JA, Holloway AK., Syst. Biol. 50(6), 2001
PMID: 12116644
A statistical approach for distinguishing hybridization and incomplete lineage sorting.
Joly S, McLenachan PA, Lockhart PJ., Am. Nat. 174(2), 2009
PMID: 19519219
Extreme divergence of mitochondrial DNA within species of pulmonate land snails
AUTHOR UNKNOWN, 1996
High population differentiation in the rock-dwelling land snail (Trochulus caelatus) endemic to the Swiss Jura Mountains
Ursenbacher S, Alvarez C, Armbruster GFJ, Baur B., Conserv. Genet. 11(4), 2010
PMID: IND44388505
An improved method for DNA isolation from mucopolysaccharide-rich molluscan tissues
AUTHOR UNKNOWN, 2000
MODELTEST: testing the model of DNA substitution.
Posada D, Crandall KA., Bioinformatics 14(9), 1998
PMID: 9918953
TREEFINDER version of November 2007. Distributed by the author. Munich
AUTHOR UNKNOWN, 2007
TREEFINDER: a powerful graphical analysis environment for molecular phylogenetics.
Jobb G, von Haeseler A, Strimmer K., BMC Evol. Biol. 4(), 2004
PMID: 15222900
PAUP*: Phylogenetic analysis using parsimony *and other methods, version 4.0b10. Sunderland, Massachusetts. Sinauer Associates
AUTHOR UNKNOWN, 2002
SeqVis: visualization of compositional heterogeneity in large alignments of nucleotides.
Ho JW, Adams CE, Lew JB, Matthews TJ, Ng CC, Shahabi-Sirjani A, Tan LH, Zhao Y, Easteal S, Wilson SR, Jermiin LS., Bioinformatics 22(17), 2006
PMID: 16766557
The root of the mammalian tree inferred from whole mitochondrial genomes.
Phillips MJ, Penny D., Mol. Phylogenet. Evol. 28(2), 2003
PMID: 12878457
An approximately unbiased test of phylogenetic tree selection.
Shimodaira H., Syst. Biol. 51(3), 2002
PMID: 12079646
CONSEL: for assessing the confidence of phylogenetic tree selection.
Shimodaira H, Hasegawa M., Bioinformatics 17(12), 2001
PMID: 11751242
Amplified fragment length polymorphism analysis of genetic diversity of Haemonchus contortus during selection for drug resistance.
Otsen M, Hoekstra R, Plas ME, Buntjer JB, Lenstra JA, Roos MH., Int. J. Parasitol. 31(10), 2001
PMID: 11429180
PHYLIP (Phylogeny Inference Package). Version 3.66. Distributed by the author, Department of Genetics, University of Washington, Seattle
AUTHOR UNKNOWN, 2005
Application of phylogenetic networks in evolutionary studies.
Huson DH, Bryant D., Mol. Biol. Evol. 23(2), 2005
PMID: 16221896
A species definition for the modern synthesis.
Mallet J., Trends Ecol. Evol. (Amst.) 10(7), 1995
PMID: 21237047

AUTHOR UNKNOWN, 1963
The prabclus package version 2.1-1. Department of Statistical Science, University College London, London
AUTHOR UNKNOWN, 2008

AUTHOR UNKNOWN, 2007
Multidimensional scaling by optimizing goodness of fit to a nonmetric hypothesis
AUTHOR UNKNOWN, 1964
Genetic diversity in European and Mediterranean faba bean germ plasm revealed by RAPD markers.
Link W, Dixkens C, Singh M, Schwall M, Melchinger AE., Theor. Appl. Genet. 90(1), 1995
PMID: IND20458731

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