Oligonucleotide microarrays for the detection and identification of viable beer spoilage bacteria

Weber DG, Sahm K, Polen T, Wendisch VF, Antranikian G (2008)
Journal of Applied Microbiology 105(4): 951-962.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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Autor*in
Weber, D. G.; Sahm, K.; Polen, T.; Wendisch, Volker F.UniBi ; Antranikian, G.
Abstract / Bemerkung
Aims: The design and evaluation of an oligonucleotide microarray in order to detect and identify viable bacterial species that play a significant role in beer spoilage. These belong to the species of the genera Lactobacillus, Megasphaera, Pediococcus and Pectinatus. Methods and Results: Oligonucleotide probes specific to beer spoilage bacteria were designed. In order to detect viable bacteria, the probes were designed to target the intergenic spacer regions (ISR) between 16S and 23S rRNA. Prior to hybridization the ISR were amplified by combining reverse transcriptase and polymerase chain reactions using a designed consenus primer. The developed oligonucleotide microarrays allows the detection of viable beer spoilage bacteria. Conclusions: This method allows the detection and discrimination of single bacterial species in a sample containing complex microbial community. Furthermore, microarrays using oligonucleotide probes targeting the ISR allow the distinction between viable bacteria with the potential to grow and non growing bacteria. Significance and Impact of the Study: The results demonstrate the feasibility of oligonucleotide microarrays as a contamination control in food industry for the detection and identification of spoilage micro-organisms within a mixed population.
Stichworte
reverse transcription-pcr; intergenic spacer regions; 16s ribosomal-rna; microarray; food; polymerase-chain-reaction; biotechnology; brewery; gene-expression; listeria-monocytogenes; foodborne pathogens; nucleotide-sequence; escherichia-coli-cells; pcr; DNA microarray
Erscheinungsjahr
2008
Zeitschriftentitel
Journal of Applied Microbiology
Band
105
Ausgabe
4
Seite(n)
951-962
ISSN
1364-5072
eISSN
1365-2672
Page URI
https://pub.uni-bielefeld.de/record/1895324

Zitieren

Weber DG, Sahm K, Polen T, Wendisch VF, Antranikian G. Oligonucleotide microarrays for the detection and identification of viable beer spoilage bacteria. Journal of Applied Microbiology. 2008;105(4):951-962.
Weber, D. G., Sahm, K., Polen, T., Wendisch, V. F., & Antranikian, G. (2008). Oligonucleotide microarrays for the detection and identification of viable beer spoilage bacteria. Journal of Applied Microbiology, 105(4), 951-962. doi:10.1111/j.1365-2672.2008.03799.x
Weber, D. G., Sahm, K., Polen, T., Wendisch, V. F., and Antranikian, G. (2008). Oligonucleotide microarrays for the detection and identification of viable beer spoilage bacteria. Journal of Applied Microbiology 105, 951-962.
Weber, D.G., et al., 2008. Oligonucleotide microarrays for the detection and identification of viable beer spoilage bacteria. Journal of Applied Microbiology, 105(4), p 951-962.
D.G. Weber, et al., “Oligonucleotide microarrays for the detection and identification of viable beer spoilage bacteria”, Journal of Applied Microbiology, vol. 105, 2008, pp. 951-962.
Weber, D.G., Sahm, K., Polen, T., Wendisch, V.F., Antranikian, G.: Oligonucleotide microarrays for the detection and identification of viable beer spoilage bacteria. Journal of Applied Microbiology. 105, 951-962 (2008).
Weber, D. G., Sahm, K., Polen, T., Wendisch, Volker F., and Antranikian, G. “Oligonucleotide microarrays for the detection and identification of viable beer spoilage bacteria”. Journal of Applied Microbiology 105.4 (2008): 951-962.

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