Genomewide expression analysis in amino acid-producing bacteria using DNA microarrays
Polen T, Wendisch VF (2004)
Applied Biochemistry and Biotechnology 118(1-3): 215-232.
Zeitschriftenaufsatz
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Autor*in
Polen, T.;
Wendisch, Volker F.UniBi 
Einrichtung
Abstract / Bemerkung
DNA microarray technology has become an important research tool for biotechnology and microbiology. It is now possible to characterize genetic diversity and gene expression in a genomewide manner. DNA microarrays have been applied extensively to study the biology of many bacteria including Escherichia coli, but only recently have they been developed for the Grampositive Corynebacterium glutamicium. Both bacteria are widely used for biotechnological amino acid production. In this article, in addition to the design and generation of microarrays as well as their use in hybridization experiments and subsequent data analysis, we describe recent applications of DNA microarray technology regarding amino acid production in C. glutamicum and E. coli. We also discuss the impact of functional genomics studies on fundamental as well as applied aspects of amino acid production with C. glutamicum and E. coli.
Stichworte
combined transcriptome;
salmonella-typhimurium;
gene-expression;
messenger-rna;
DNA chips;
genomewide gene expression analysis;
cluster analysis;
DNA microarrays;
global regulatory mechanisms;
corynebacterium glutamicum;
amino acid production;
escherichia coli;
escherichia-coli k-12;
corynebacterium-glutamicum atcc-13032;
responsive regulatory protein;
density oligonucleotide arrays;
acetate metabolism;
nitrogen limitation
Erscheinungsjahr
2004
Zeitschriftentitel
Applied Biochemistry and Biotechnology
Band
118
Ausgabe
1-3
Seite(n)
215-232
ISSN
0273-2289
Page URI
https://pub.uni-bielefeld.de/record/1895226
Zitieren
Polen T, Wendisch VF. Genomewide expression analysis in amino acid-producing bacteria using DNA microarrays. Applied Biochemistry and Biotechnology. 2004;118(1-3):215-232.
Polen, T., & Wendisch, V. F. (2004). Genomewide expression analysis in amino acid-producing bacteria using DNA microarrays. Applied Biochemistry and Biotechnology, 118(1-3), 215-232. https://doi.org/10.1385/abab:118:1-3:215
Polen, T., and Wendisch, Volker F. 2004. “Genomewide expression analysis in amino acid-producing bacteria using DNA microarrays”. Applied Biochemistry and Biotechnology 118 (1-3): 215-232.
Polen, T., and Wendisch, V. F. (2004). Genomewide expression analysis in amino acid-producing bacteria using DNA microarrays. Applied Biochemistry and Biotechnology 118, 215-232.
Polen, T., & Wendisch, V.F., 2004. Genomewide expression analysis in amino acid-producing bacteria using DNA microarrays. Applied Biochemistry and Biotechnology, 118(1-3), p 215-232.
T. Polen and V.F. Wendisch, “Genomewide expression analysis in amino acid-producing bacteria using DNA microarrays”, Applied Biochemistry and Biotechnology, vol. 118, 2004, pp. 215-232.
Polen, T., Wendisch, V.F.: Genomewide expression analysis in amino acid-producing bacteria using DNA microarrays. Applied Biochemistry and Biotechnology. 118, 215-232 (2004).
Polen, T., and Wendisch, Volker F. “Genomewide expression analysis in amino acid-producing bacteria using DNA microarrays”. Applied Biochemistry and Biotechnology 118.1-3 (2004): 215-232.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
38 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
Global mRNA decay and 23S rRNA fragmentation in Gluconobacter oxydans 621H.
Kranz A, Steinmann A, Degner U, Mengus-Kaya A, Matamouros S, Bott M, Polen T., BMC Genomics 19(1), 2018
PMID: 30326828
Kranz A, Steinmann A, Degner U, Mengus-Kaya A, Matamouros S, Bott M, Polen T., BMC Genomics 19(1), 2018
PMID: 30326828
The three-component system EsrISR regulates a cell envelope stress response in Corynebacterium glutamicum.
Kleine B, Chattopadhyay A, Polen T, Pinto D, Mascher T, Bott M, Brocker M, Freudl R., Mol Microbiol 106(5), 2017
PMID: 28922502
Kleine B, Chattopadhyay A, Polen T, Pinto D, Mascher T, Bott M, Brocker M, Freudl R., Mol Microbiol 106(5), 2017
PMID: 28922502
Regulons of global transcription factors in Corynebacterium glutamicum.
Toyoda K, Inui M., Appl Microbiol Biotechnol 100(1), 2016
PMID: 26496920
Toyoda K, Inui M., Appl Microbiol Biotechnol 100(1), 2016
PMID: 26496920
A prophage-encoded actin-like protein required for efficient viral DNA replication in bacteria.
Donovan C, Heyer A, Pfeifer E, Polen T, Wittmann A, Krämer R, Frunzke J, Bramkamp M., Nucleic Acids Res 43(10), 2015
PMID: 25916847
Donovan C, Heyer A, Pfeifer E, Polen T, Wittmann A, Krämer R, Frunzke J, Bramkamp M., Nucleic Acids Res 43(10), 2015
PMID: 25916847
Single-Domain Peptidyl-Prolyl cis/trans Isomerase FkpA from Corynebacterium glutamicum Improves the Biomass Yield at Increased Growth Temperatures.
Kallscheuer N, Bott M, van Ooyen J, Polen T., Appl Environ Microbiol 81(22), 2015
PMID: 26341203
Kallscheuer N, Bott M, van Ooyen J, Polen T., Appl Environ Microbiol 81(22), 2015
PMID: 26341203
Beyond growth rate 0.6: What drives Corynebacterium glutamicum to higher growth rates in defined medium.
Unthan S, Grünberger A, van Ooyen J, Gätgens J, Heinrich J, Paczia N, Wiechert W, Kohlheyer D, Noack S., Biotechnol Bioeng 111(2), 2014
PMID: 23996851
Unthan S, Grünberger A, van Ooyen J, Gätgens J, Heinrich J, Paczia N, Wiechert W, Kohlheyer D, Noack S., Biotechnol Bioeng 111(2), 2014
PMID: 23996851
Pushing product formation to its limit: metabolic engineering of Corynebacterium glutamicum for L-leucine overproduction.
Vogt M, Haas S, Klaffl S, Polen T, Eggeling L, van Ooyen J, Bott M., Metab Eng 22(), 2014
PMID: 24333966
Vogt M, Haas S, Klaffl S, Polen T, Eggeling L, van Ooyen J, Bott M., Metab Eng 22(), 2014
PMID: 24333966
Subtilase SprP exerts pleiotropic effects in Pseudomonas aeruginosa.
Pelzer A, Polen T, Funken H, Rosenau F, Wilhelm S, Bott M, Jaeger KE., Microbiologyopen 3(1), 2014
PMID: 24376018
Pelzer A, Polen T, Funken H, Rosenau F, Wilhelm S, Bott M, Jaeger KE., Microbiologyopen 3(1), 2014
PMID: 24376018
NADPH-dependent reductive biotransformation with Escherichia coli and its pfkA deletion mutant: influence on global gene expression and role of oxygen supply.
Siedler S, Bringer S, Polen T, Bott M., Biotechnol Bioeng 111(10), 2014
PMID: 24771245
Siedler S, Bringer S, Polen T, Bott M., Biotechnol Bioeng 111(10), 2014
PMID: 24771245
Genome-wide transcriptional profiling of the purple sulfur bacterium Allochromatium vinosum DSM 180T during growth on different reduced sulfur compounds.
Weissgerber T, Dobler N, Polen T, Latus J, Stockdreher Y, Dahl C., J Bacteriol 195(18), 2013
PMID: 23873913
Weissgerber T, Dobler N, Polen T, Latus J, Stockdreher Y, Dahl C., J Bacteriol 195(18), 2013
PMID: 23873913
Biotin protein ligase from Corynebacterium glutamicum: role for growth and L: -lysine production.
Peters-Wendisch P, Stansen KC, Götker S, Wendisch VF., Appl Microbiol Biotechnol 93(6), 2012
PMID: 22159614
Peters-Wendisch P, Stansen KC, Götker S, Wendisch VF., Appl Microbiol Biotechnol 93(6), 2012
PMID: 22159614
GntR-type transcriptional regulator PckR negatively regulates the expression of phosphoenolpyruvate carboxykinase in Corynebacterium glutamicum.
Hyeon JE, Kang DH, Kim YI, You SK, Han SO., J Bacteriol 194(9), 2012
PMID: 22366416
Hyeon JE, Kang DH, Kim YI, You SK, Han SO., J Bacteriol 194(9), 2012
PMID: 22366416
Improved L-lysine production with Corynebacterium glutamicum and systemic insight into citrate synthase flux and activity.
van Ooyen J, Noack S, Bott M, Reth A, Eggeling L., Biotechnol Bioeng 109(8), 2012
PMID: 22392073
van Ooyen J, Noack S, Bott M, Reth A, Eggeling L., Biotechnol Bioeng 109(8), 2012
PMID: 22392073
The two-component system ChrSA is crucial for haem tolerance and interferes with HrrSA in haem-dependent gene regulation in Corynebacterium glutamicum.
Heyer A, Gätgens C, Hentschel E, Kalinowski J, Bott M, Frunzke J., Microbiology 158(pt 12), 2012
PMID: 23038807
Heyer A, Gätgens C, Hentschel E, Kalinowski J, Bott M, Frunzke J., Microbiology 158(pt 12), 2012
PMID: 23038807
Control of heme homeostasis in Corynebacterium glutamicum by the two-component system HrrSA.
Frunzke J, Gätgens C, Brocker M, Bott M., J Bacteriol 193(5), 2011
PMID: 21217007
Frunzke J, Gätgens C, Brocker M, Bott M., J Bacteriol 193(5), 2011
PMID: 21217007
The two-component signal transduction system CopRS of Corynebacterium glutamicum is required for adaptation to copper-excess stress.
Schelder S, Zaade D, Litsanov B, Bott M, Brocker M., PLoS One 6(7), 2011
PMID: 21799779
Schelder S, Zaade D, Litsanov B, Bott M, Brocker M., PLoS One 6(7), 2011
PMID: 21799779
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Okibe N, Suzuki N, Inui M, Yukawa H., Lett Appl Microbiol 50(2), 2010
PMID: 20002569
Okibe N, Suzuki N, Inui M, Yukawa H., Lett Appl Microbiol 50(2), 2010
PMID: 20002569
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Neusser T, Polen T, Geissen R, Wagner R., BMC Genomics 11(), 2010
PMID: 20222947
Neusser T, Polen T, Geissen R, Wagner R., BMC Genomics 11(), 2010
PMID: 20222947
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Rehm N, Georgi T, Hiery E, Degner U, Schmiedl A, Burkovski A, Bott M., Microbiology 156(pt 10), 2010
PMID: 20656783
Rehm N, Georgi T, Hiery E, Degner U, Schmiedl A, Burkovski A, Bott M., Microbiology 156(pt 10), 2010
PMID: 20656783
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Nickel J, Irzik K, van Ooyen J, Eggeling L., Mol Microbiol 78(1), 2010
PMID: 20923423
Nickel J, Irzik K, van Ooyen J, Eggeling L., Mol Microbiol 78(1), 2010
PMID: 20923423
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Kato O, Youn JW, Stansen KC, Matsui D, Oikawa T, Wendisch VF., BMC Microbiol 10(), 2010
PMID: 21159175
Kato O, Youn JW, Stansen KC, Matsui D, Oikawa T, Wendisch VF., BMC Microbiol 10(), 2010
PMID: 21159175
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Schweitzer JE, Stolz M, Diesveld R, Etterich H, Eggeling L., J Biotechnol 139(3), 2009
PMID: 19124047
Schweitzer JE, Stolz M, Diesveld R, Etterich H, Eggeling L., J Biotechnol 139(3), 2009
PMID: 19124047
Pathway identification combining metabolic flux and functional genomics analyses: acetate and propionate activation by Corynebacterium glutamicum.
Veit A, Rittmann D, Georgi T, Youn JW, Eikmanns BJ, Wendisch VF., J Biotechnol 140(1-2), 2009
PMID: 19162097
Veit A, Rittmann D, Georgi T, Youn JW, Eikmanns BJ, Wendisch VF., J Biotechnol 140(1-2), 2009
PMID: 19162097
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Brocker M, Schaffer S, Mack C, Bott M., J Bacteriol 191(12), 2009
PMID: 19376865
Brocker M, Schaffer S, Mack C, Bott M., J Bacteriol 191(12), 2009
PMID: 19376865
Regulation of L-lactate utilization by the FadR-type regulator LldR of Corynebacterium glutamicum.
Georgi T, Engels V, Wendisch VF., J Bacteriol 190(3), 2008
PMID: 18039772
Georgi T, Engels V, Wendisch VF., J Bacteriol 190(3), 2008
PMID: 18039772
Co-ordinated regulation of gluconate catabolism and glucose uptake in Corynebacterium glutamicum by two functionally equivalent transcriptional regulators, GntR1 and GntR2.
Frunzke J, Engels V, Hasenbein S, Gätgens C, Bott M., Mol Microbiol 67(2), 2008
PMID: 18047570
Frunzke J, Engels V, Hasenbein S, Gätgens C, Bott M., Mol Microbiol 67(2), 2008
PMID: 18047570
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Letek M, Fiuza M, Ordóñez E, Villadangos AF, Ramos A, Mateos LM, Gil JA., Antonie Van Leeuwenhoek 94(1), 2008
PMID: 18283557
Letek M, Fiuza M, Ordóñez E, Villadangos AF, Ramos A, Mateos LM, Gil JA., Antonie Van Leeuwenhoek 94(1), 2008
PMID: 18283557
Population Heterogeneity in Corynebacterium glutamicum ATCC 13032 caused by prophage CGP3.
Frunzke J, Bramkamp M, Schweitzer JE, Bott M., J Bacteriol 190(14), 2008
PMID: 18487330
Frunzke J, Bramkamp M, Schweitzer JE, Bott M., J Bacteriol 190(14), 2008
PMID: 18487330
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PMID: 18785882
Weber DG, Sahm K, Polen T, Wendisch VF, Antranikian G., J Appl Microbiol 105(4), 2008
PMID: 18785882
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Veit A, Polen T, Wendisch VF., Appl Microbiol Biotechnol 74(2), 2007
PMID: 17273855
Veit A, Polen T, Wendisch VF., Appl Microbiol Biotechnol 74(2), 2007
PMID: 17273855
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Engels V, Wendisch VF., J Bacteriol 189(8), 2007
PMID: 17293426
Engels V, Wendisch VF., J Bacteriol 189(8), 2007
PMID: 17293426
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PMID: 17364200
Sindelar G, Wendisch VF., Appl Microbiol Biotechnol 76(3), 2007
PMID: 17364200
FarR, a putative regulator of amino acid metabolism in Corynebacterium glutamicum.
Hänssler E, Müller T, Jessberger N, Völzke A, Plassmeier J, Kalinowski J, Krämer R, Burkovski A., Appl Microbiol Biotechnol 76(3), 2007
PMID: 17483938
Hänssler E, Müller T, Jessberger N, Völzke A, Plassmeier J, Kalinowski J, Krämer R, Burkovski A., Appl Microbiol Biotechnol 76(3), 2007
PMID: 17483938
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PMID: 17526706
Jakob K, Satorhelyi P, Lange C, Wendisch VF, Silakowski B, Scherer S, Neuhaus K., J Bacteriol 189(15), 2007
PMID: 17526706
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PMID: 15639085
Polen T, Krämer M, Bongaerts J, Wubbolts M, Wendisch VF., J Biotechnol 115(3), 2005
PMID: 15639085
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Wennerhold J, Krug A, Bott M., J Biol Chem 280(49), 2005
PMID: 16179344
Wennerhold J, Krug A, Bott M., J Biol Chem 280(49), 2005
PMID: 16179344
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Stansen C, Uy D, Delaunay S, Eggeling L, Goergen JL, Wendisch VF., Appl Environ Microbiol 71(10), 2005
PMID: 16204505
Stansen C, Uy D, Delaunay S, Eggeling L, Goergen JL, Wendisch VF., Appl Environ Microbiol 71(10), 2005
PMID: 16204505
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PMID: 15375646
Netzer R, Krause M, Rittmann D, Peters-Wendisch PG, Eggeling L, Wendisch VF, Sahm H., Arch Microbiol 182(5), 2004
PMID: 15375646
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