Escherichia coli spotted double-strand DNA microarrays: RNA extraction, labeling, hybridization, quality control, and data management

Khodursky AB, Bernstein JA, Peter BJ, Rhodius V, Wendisch VF, Zimmer DP (2003)
Methods Mol Biol 224: 61-78.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
Khodursky, A. B.; Bernstein, J. A.; Peter, B. J.; Rhodius, V.; Wendisch, Volker F.UniBi ; Zimmer, D. P.
Erscheinungsjahr
2003
Zeitschriftentitel
Methods Mol Biol
Band
224
Seite(n)
61-78
ISBN
159259364X
ISSN
1064-3745
Page URI
https://pub.uni-bielefeld.de/record/1895065

Zitieren

Khodursky AB, Bernstein JA, Peter BJ, Rhodius V, Wendisch VF, Zimmer DP. Escherichia coli spotted double-strand DNA microarrays: RNA extraction, labeling, hybridization, quality control, and data management. Methods Mol Biol. 2003;224:61-78.
Khodursky, A. B., Bernstein, J. A., Peter, B. J., Rhodius, V., Wendisch, V. F., & Zimmer, D. P. (2003). Escherichia coli spotted double-strand DNA microarrays: RNA extraction, labeling, hybridization, quality control, and data management. Methods Mol Biol, 224, 61-78. https://doi.org/10.1385/1-59259-364-X:61
Khodursky, A. B., Bernstein, J. A., Peter, B. J., Rhodius, V., Wendisch, Volker F., and Zimmer, D. P. 2003. “Escherichia coli spotted double-strand DNA microarrays: RNA extraction, labeling, hybridization, quality control, and data management”. Methods Mol Biol 224: 61-78.
Khodursky, A. B., Bernstein, J. A., Peter, B. J., Rhodius, V., Wendisch, V. F., and Zimmer, D. P. (2003). Escherichia coli spotted double-strand DNA microarrays: RNA extraction, labeling, hybridization, quality control, and data management. Methods Mol Biol 224, 61-78.
Khodursky, A.B., et al., 2003. Escherichia coli spotted double-strand DNA microarrays: RNA extraction, labeling, hybridization, quality control, and data management. Methods Mol Biol, 224, p 61-78.
A.B. Khodursky, et al., “Escherichia coli spotted double-strand DNA microarrays: RNA extraction, labeling, hybridization, quality control, and data management”, Methods Mol Biol, vol. 224, 2003, pp. 61-78.
Khodursky, A.B., Bernstein, J.A., Peter, B.J., Rhodius, V., Wendisch, V.F., Zimmer, D.P.: Escherichia coli spotted double-strand DNA microarrays: RNA extraction, labeling, hybridization, quality control, and data management. Methods Mol Biol. 224, 61-78 (2003).
Khodursky, A. B., Bernstein, J. A., Peter, B. J., Rhodius, V., Wendisch, Volker F., and Zimmer, D. P. “Escherichia coli spotted double-strand DNA microarrays: RNA extraction, labeling, hybridization, quality control, and data management”. Methods Mol Biol 224 (2003): 61-78.

39 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Regulated Stochasticity in a Bacterial Signaling Network Permits Tolerance to a Rapid Environmental Change.
Carey JN, Mettert EL, Roggiani M, Myers KS, Kiley PJ, Goulian M., Cell 173(1), 2018
PMID: 29502970
Scavenging of superoxide by a membrane-bound superoxide oxidase.
Lundgren CAK, Sjöstrand D, Biner O, Bennett M, Rudling A, Johansson AL, Brzezinski P, Carlsson J, von Ballmoos C, Högbom M., Nat Chem Biol 14(8), 2018
PMID: 29915379
Perturbed states of the bacterial chromosome: a thymineless death case study.
Ostrer L, Hamann BL, Khodursky A., Front Microbiol 6(), 2015
PMID: 25964781
Thymineless Death Lives On: New Insights into a Classic Phenomenon.
Khodursky A, Guzmán EC, Hanawalt PC., Annu Rev Microbiol 69(), 2015
PMID: 26253395
Transcriptional responses of Pseudomonas syringae to growth in epiphytic versus apoplastic leaf sites.
Yu X, Lund SP, Scott RA, Greenwald JW, Records AH, Nettleton D, Lindow SE, Gross DC, Beattie GA., Proc Natl Acad Sci U S A 110(5), 2013
PMID: 23319638
Genome-scale analysis of escherichia coli FNR reveals complex features of transcription factor binding.
Myers KS, Yan H, Ong IM, Chung D, Liang K, Tran F, Keleş S, Landick R, Kiley PJ., PLoS Genet 9(6), 2013
PMID: 23818864
dPeak: high resolution identification of transcription factor binding sites from PET and SET ChIP-Seq data.
Chung D, Park D, Myers K, Grass J, Kiley P, Landick R, Keleş S., PLoS Comput Biol 9(10), 2013
PMID: 24146601
The bacterial response regulator ArcA uses a diverse binding site architecture to regulate carbon oxidation globally.
Park DM, Akhtar MS, Ansari AZ, Landick R, Kiley PJ., PLoS Genet 9(10), 2013
PMID: 24146625
Transient growth arrest in Escherichia coli induced by chromosome condensation.
Edwards AL, Sangurdekar DP, Jeong KS, Khodursky AB, Rybenkov VV., PLoS One 8(12), 2013
PMID: 24376785
Lrp of Corynebacterium glutamicum controls expression of the brnFE operon encoding the export system for L-methionine and branched-chain amino acids.
Lange C, Mustafi N, Frunzke J, Kennerknecht N, Wessel M, Bott M, Wendisch VF., J Biotechnol 158(4), 2012
PMID: 21683740
Rho and NusG suppress pervasive antisense transcription in Escherichia coli.
Peters JM, Mooney RA, Grass JA, Jessen ED, Tran F, Landick R., Genes Dev 26(23), 2012
PMID: 23207917
A mitochondrial rRNA dimethyladenosine methyltransferase in Arabidopsis.
Richter U, Kühn K, Okada S, Brennicke A, Weihe A, Börner T., Plant J 61(4), 2010
PMID: 19929881
Thymineless death is associated with loss of essential genetic information from the replication origin.
Sangurdekar DP, Hamann BL, Smirnov D, Srienc F, Hanawalt PC, Khodursky AB., Mol Microbiol 75(6), 2010
PMID: 20132444
In vivo and in vitro patterns of the activity of simocyclinone D8, an angucyclinone antibiotic from Streptomyces antibioticus.
Oppegard LM, Hamann BL, Streck KR, Ellis KC, Fiedler HP, Khodursky AB, Hiasa H., Antimicrob Agents Chemother 53(5), 2009
PMID: 19273673
Rapid strain improvement through optimized evolution in the cytostat.
Gilbert A, Sangurdekar DP, Srienc F., Biotechnol Bioeng 103(3), 2009
PMID: 19241387
Transcription, translation, and the evolution of specialists and generalists.
Zhong S, Miller SP, Dykhuizen DE, Dean AM., Mol Biol Evol 26(12), 2009
PMID: 19706726
Limited functional conservation of a global regulator among related bacterial genera: Lrp in Escherichia, Proteus and Vibrio.
Lintner RE, Mishra PK, Srivastava P, Martinez-Vaz BM, Khodursky AB, Blumenthal RM., BMC Microbiol 8(), 2008
PMID: 18405378
Gene expression patterns of sulfur starvation in Synechocystis sp. PCC 6803.
Zhang Z, Pendse ND, Phillips KN, Cotner JB, Khodursky A., BMC Genomics 9(), 2008
PMID: 18644144
Conserved and variable functions of the sigmaE stress response in related genomes.
Rhodius VA, Suh WC, Nonaka G, West J, Gross CA., PLoS Biol 4(1), 2006
PMID: 16336047
A classification based framework for quantitative description of large-scale microarray data.
Sangurdekar DP, Srienc F, Khodursky AB., Genome Biol 7(4), 2006
PMID: 16626502
Overflow metabolism in Escherichia coli during steady-state growth: transcriptional regulation and effect of the redox ratio.
Vemuri GN, Altman E, Sangurdekar DP, Khodursky AB, Eiteman MA., Appl Environ Microbiol 72(5), 2006
PMID: 16672514
Persisters: a distinct physiological state of E. coli.
Shah D, Zhang Z, Khodursky A, Kaldalu N, Kurg K, Lewis K., BMC Microbiol 6(), 2006
PMID: 16768798
Analysis of pleiotropic transcriptional profiles: a case study of DNA gyrase inhibition.
Jeong KS, Xie Y, Hiasa H, Khodursky AB., PLoS Genet 2(9), 2006
PMID: 17009874
The global gene expression response of Escherichia coli to L-phenylalanine.
Polen T, Krämer M, Bongaerts J, Wubbolts M, Wendisch VF., J Biotechnol 115(3), 2005
PMID: 15639085
Genome-wide localization of mobile elements: experimental, statistical and biological considerations.
Martinez-Vaz BM, Xie Y, Pan W, Khodursky AB., BMC Genomics 6(), 2005
PMID: 15929794
Topological domain structure of the Escherichia coli chromosome.
Postow L, Hardy CD, Arsuaga J, Cozzarelli NR., Genes Dev 18(14), 2004
PMID: 15256503
Direct detection of a specific cellular mRNA on functionalized microplate.
Alsaidi M, Lum E, Huang Z., Chembiochem 5(8), 2004
PMID: 15300840
Evolutionary genomics of ecological specialization.
Zhong S, Khodursky A, Dykhuizen DE, Dean AM., Proc Natl Acad Sci U S A 101(32), 2004
PMID: 15289609
Roles of pyruvate kinase and malic enzyme in Corynebacterium glutamicum for growth on carbon sources requiring gluconeogenesis.
Netzer R, Krause M, Rittmann D, Peters-Wendisch PG, Eggeling L, Wendisch VF, Sahm H., Arch Microbiol 182(5), 2004
PMID: 15375646
Spatial patterns of transcriptional activity in the chromosome of Escherichia coli.
Jeong KS, Ahn J, Khodursky AB., Genome Biol 5(11), 2004
PMID: 15535862
Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Quellen

PMID: 12710666
PubMed | Europe PMC

Suchen in

Google Scholar
ISBN Suche