The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity

Heim MA, Jakoby M, Werber M, Martin C, Weisshaar B, Bailey PC (2003)
Molecular Biology and Evolution 20(5): 735-747.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
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Heim, M.A.; Jakoby, M.; Werber, M.; Martin, Cathie; Weisshaar, BerndUniBi ; Bailey, P.C.
Abstract / Bemerkung
Basic helix-loop-helix (bHLH) transcription factors (TFs) belong to a family of transcriptional regulators present in three eukaryotic kingdoms. Many different functions have been identified for these proteins in animals, including the control of cell proliferation and development of specific cell lineages. Their mechanism for controlling gene transcription often involves homodimerization or heterodimerization. In plants, little is known about the bHLH family, but we have determined that there are 133 bHLH genes in Arabidopsis thaliana and have confirmed that at least 113 of them are expressed. The AtbHLH genes constitute one of the largest families of transcription factors in A. thaliana with significantly more members than are found in most animal species and about an equivalent number to those in vertebrates. Comparisons with animal sequences suggest that the majority of plant bHLH genes have evolved from the ancestral group B class of bHLH genes. By studying the AtbHLH genes collectively, twelve subfamilies have been identified. Within each of these main groups, there are conserved amino acid sequence motifs outside the DNA binding domain. Potential gene redundancy among members of smaller subgroups has been analyzed, and the resulting information is presented to provide a simplified visual interpretation of the gene family, identifying related genes that are likely to share similar functions. Based on the current characterization of a limited number of plant bHLH proteins, we predict that this family of TFs has a range of different roles in plant cell and tissue development as well as plant metabolism.
Molecular Biology and Evolution
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Heim MA, Jakoby M, Werber M, Martin C, Weisshaar B, Bailey PC. The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Molecular Biology and Evolution. 2003;20(5):735-747.
Heim, M. A., Jakoby, M., Werber, M., Martin, C., Weisshaar, B., & Bailey, P. C. (2003). The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Molecular Biology and Evolution, 20(5), 735-747.
Heim, M.A., Jakoby, M., Werber, M., Martin, Cathie, Weisshaar, Bernd, and Bailey, P.C. 2003. “The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity”. Molecular Biology and Evolution 20 (5): 735-747.
Heim, M. A., Jakoby, M., Werber, M., Martin, C., Weisshaar, B., and Bailey, P. C. (2003). The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Molecular Biology and Evolution 20, 735-747.
Heim, M.A., et al., 2003. The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Molecular Biology and Evolution, 20(5), p 735-747.
M.A. Heim, et al., “The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity”, Molecular Biology and Evolution, vol. 20, 2003, pp. 735-747.
Heim, M.A., Jakoby, M., Werber, M., Martin, C., Weisshaar, B., Bailey, P.C.: The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity. Molecular Biology and Evolution. 20, 735-747 (2003).
Heim, M.A., Jakoby, M., Werber, M., Martin, Cathie, Weisshaar, Bernd, and Bailey, P.C. “The basic helix-loop-helix transcription factor family in plants: a genome-wide study of protein structure and functional diversity”. Molecular Biology and Evolution 20.5 (2003): 735-747.

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Nagel DH, Pruneda-Paz JL, Kay SA., Proc Natl Acad Sci U S A 111(40), 2014
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Transcriptome sequencing of rhizome tissue of Sinopodophyllum hexandrum at two temperatures.
Kumari A, Singh HR, Jha A, Swarnkar MK, Shankar R, Kumar S., BMC Genomics 15(), 2014
PMID: 25287271
Comparative transcriptomic analysis of male and female flowers of monoecious Quercus suber.
Rocheta M, Sobral R, Magalhães J, Amorim MI, Ribeiro T, Pinheiro M, Egas C, Morais-Cecílio L, Costa MM., Front Plant Sci 5(), 2014
PMID: 25414713
The regulation of anthocyanin synthesis in the wheat pericarp.
Shoeva OY, Gordeeva EI, Khlestkina EK., Molecules 19(12), 2014
PMID: 25486242
Stress-induced expression of the transcription factor RERJ1 is tightly regulated in response to jasmonic acid accumulation in rice.
Miyamoto K, Shimizu T, Mochizuki S, Nishizawa Y, Minami E, Nojiri H, Yamane H, Okada K., Protoplasma 250(1), 2013
PMID: 22456953
Co-expression of AtbHLH17 and AtWRKY28 confers resistance to abiotic stress in Arabidopsis.
Babitha KC, Ramu SV, Pruthvi V, Mahesh P, Nataraja KN, Udayakumar M., Transgenic Res 22(2), 2013
PMID: 22948308
Identification and characterization of MYB-bHLH-WD40 regulatory complexes controlling proanthocyanidin biosynthesis in strawberry (Fragaria × ananassa) fruits.
Schaart JG, Dubos C, Romero De La Fuente I, van Houwelingen AM, de Vos RC, Jonker HH, Xu W, Routaboul JM, Lepiniec L, Bovy AG., New Phytol 197(2), 2013
PMID: 23157553
The R2R3-MYB, bHLH, WD40, and related transcription factors in flavonoid biosynthesis.
Zhao L, Gao L, Wang H, Chen X, Wang Y, Yang H, Wei C, Wan X, Xia T., Funct Integr Genomics 13(1), 2013
PMID: 23184474
Identification and characterization of a homologue to the Arabidopsis INDEHISCENT gene in common Bean.
Gioia T, Logozzo G, Kami J, Spagnoletti Zeuli P, Gepts P., J Hered 104(2), 2013
PMID: 23235700
A survey of genes involved in Arachis stenosperma resistance to Meloidogyne arenaria race 1
Morgante CV, Brasileiro ACM, Roberts PA, Guimaraes LA, Araujo ACG, Fonseca LN, Leal-Bertioli SCM, Bertioli DJ, Guimaraes PM., Funct Plant Biol 40(12), 2013
PMID: IND500706237
Targeted linkage map densification to improve cell wall related QTL detection and interpretation in maize.
Courtial A, Thomas J, Reymond M, Méchin V, Grima-Pettenati J, Barrière Y., Theor Appl Genet 126(5), 2013
PMID: 23358861
Regulation of flavonoid biosynthesis involves an unexpected complex transcriptional regulation of TT8 expression, in Arabidopsis.
Xu W, Grain D, Le Gourrierec J, Harscoët E, Berger A, Jauvion V, Scagnelli A, Berger N, Bidzinski P, Kelemen Z, Salsac F, Baudry A, Routaboul JM, Lepiniec L, Dubos C., New Phytol 198(1), 2013
PMID: 23398515
NaMYC2 transcription factor regulates a subset of plant defense responses in Nicotiana attenuata.
Woldemariam MG, Dinh ST, Oh Y, Gaquerel E, Baldwin IT, Galis I., BMC Plant Biol 13(), 2013
PMID: 23634896
Kinetics and functional diversity among the five members of the NADP-malic enzyme family from Zea mays, a C4 species.
Alvarez CE, Saigo M, Margarit E, Andreo CS, Drincovich MF., Photosynth Res 115(1), 2013
PMID: 23649167
Transcriptome analysis of Barbarea vulgaris infested with diamondback moth (Plutella xylostella) larvae.
Wei X, Zhang X, Shen D, Wang H, Wu Q, Lu P, Qiu Y, Song J, Zhang Y, Li X., PLoS One 8(5), 2013
PMID: 23696897
Classification and evolutionary analysis of the basic helix-loop-helix gene family in the green anole lizard, Anolis carolinensis.
Liu A, Wang Y, Zhang D, Wang X, Song H, Dang C, Yao Q, Chen K., Mol Genet Genomics 288(7-8), 2013
PMID: 23756994
Analysis of expressed sequence tags (ESTs) from avocado seed (Persea americana var. drymifolia) reveals abundant expression of the gene encoding the antimicrobial peptide snakin.
Guzmán-Rodríguez JJ, Ibarra-Laclette E, Herrera-Estrella L, Ochoa-Zarzosa A, Suárez-Rodríguez LM, Rodríguez-Zapata LC, Salgado-Garciglia R, Jimenez-Moraila B, López-Meza JE, López-Gómez R., Plant Physiol Biochem 70(), 2013
PMID: 23811120
Basic helix-loop-helix transcription factors JASMONATE-ASSOCIATED MYC2-LIKE1 (JAM1), JAM2, and JAM3 are negative regulators of jasmonate responses in Arabidopsis.
Sasaki-Sekimoto Y, Jikumaru Y, Obayashi T, Saito H, Masuda S, Kamiya Y, Ohta H, Shirasu K., Plant Physiol 163(1), 2013
PMID: 23852442
Plant flavonoids--biosynthesis, transport and involvement in stress responses.
Petrussa E, Braidot E, Zancani M, Peresson C, Bertolini A, Patui S, Vianello A., Int J Mol Sci 14(7), 2013
PMID: 23867610
The bHLH subgroup IIId factors negatively regulate jasmonate-mediated plant defense and development.
Song S, Qi T, Fan M, Zhang X, Gao H, Huang H, Wu D, Guo H, Xie D., PLoS Genet 9(7), 2013
PMID: 23935516
The bHLH proteins BEE and BIM positively modulate the shade avoidance syndrome in Arabidopsis seedlings.
Cifuentes-Esquivel N, Bou-Torrent J, Galstyan A, Gallemí M, Sessa G, Salla Martret M, Roig-Villanova I, Ruberti I, Martínez-García JF., Plant J 75(6), 2013
PMID: 23763263
A nuclear calcium-sensing pathway is critical for gene regulation and salt stress tolerance in Arabidopsis.
Guan Q, Guan Q, Wu J, Yue X, Zhang Y, Zhu J., PLoS Genet 9(8), 2013
PMID: 24009530
De Novo transcriptome sequencing reveals important molecular networks and metabolic pathways of the plant, Chlorophytum borivilianum.
Kalra S, Puniya BL, Kulshreshtha D, Kumar S, Kaur J, Ramachandran S, Singh K., PLoS One 8(12), 2013
PMID: 24376689
Signal transduction during cold, salt, and drought stresses in plants.
Huang GT, Ma SL, Bai LP, Zhang L, Ma H, Jia P, Liu J, Zhong M, Guo ZF., Mol Biol Rep 39(2), 2012
PMID: 21573796
Phylogenetic analysis and classification of the fungal bHLH domain.
Sailsbery JK, Atchley WR, Dean RA., Mol Biol Evol 29(5), 2012
PMID: 22114358
Functional specialization of the plant miR396 regulatory network through distinct microRNA-target interactions.
Debernardi JM, Rodriguez RE, Mecchia MA, Palatnik JF., PLoS Genet 8(1), 2012
PMID: 22242012
A gene regulatory network for root epidermis cell differentiation in Arabidopsis.
Bruex A, Kainkaryam RM, Wieckowski Y, Kang YH, Bernhardt C, Xia Y, Zheng X, Wang JY, Lee MM, Benfey P, Woolf PJ, Schiefelbein J., PLoS Genet 8(1), 2012
PMID: 22253603
A novel gene IBF1 is required for the inhibition of brown pigment deposition in rice hull furrows.
Shao T, Qian Q, Tang D, Chen J, Li M, Cheng Z, Luo Q., Theor Appl Genet 125(2), 2012
PMID: 22419106
Retrotransposons control fruit-specific, cold-dependent accumulation of anthocyanins in blood oranges.
Butelli E, Licciardello C, Zhang Y, Liu J, Mackay S, Bailey P, Reforgiato-Recupero G, Martin C., Plant Cell 24(3), 2012
PMID: 22427337
De novo sequencing and characterization of Picrorhiza kurrooa transcriptome at two temperatures showed major transcriptome adjustments.
Gahlan P, Singh HR, Shankar R, Sharma N, Kumari A, Chawla V, Ahuja PS, Kumar S., BMC Genomics 13(), 2012
PMID: 22462805
Identification and in silico characterization of soybean trihelix-GT and bHLH transcription factors involved in stress responses.
Osorio MB, Bücker-Neto L, Castilhos G, Turchetto-Zolet AC, Wiebke-Strohm B, Bodanese-Zanettini MH, Margis-Pinheiro M., Genet Mol Biol 35(1 (suppl)), 2012
PMID: 22802709
Mechanisms of stomatal development: an evolutionary view.
Vatén A, Bergmann DC., Evodevo 3(1), 2012
PMID: 22691547
Regulatory switch enforced by basic helix-loop-helix and ACT-domain mediated dimerizations of the maize transcription factor R.
Kong Q, Pattanaik S, Feller A, Werkman JR, Chai C, Wang Y, Grotewold E, Yuan L., Proc Natl Acad Sci U S A 109(30), 2012
PMID: 22778424
Arabidopsis mutant sk156 reveals complex regulation of SPL15 in a miR156-controlled gene network.
Wei S, Gruber MY, Yu B, Gao MJ, Khachatourians GG, Hegedus DD, Parkin IA, Hannoufa A., BMC Plant Biol 12(), 2012
PMID: 22989211
Early gene expression events in the laminar abscission zone of abscission-promoted citrus leaves after a cycle of water stress/rehydration: involvement of CitbHLH1.
Agustí J, Gimeno J, Merelo P, Serrano R, Cercós M, Conesa A, Talón M, Tadeo FR., J Exp Bot 63(17), 2012
PMID: 23028022
A triantagonistic basic helix-loop-helix system regulates cell elongation in Arabidopsis.
Ikeda M, Fujiwara S, Mitsuda N, Ohme-Takagi M., Plant Cell 24(11), 2012
PMID: 23161888
PIFs: pivotal components in a cellular signaling hub.
Leivar P, Quail PH., Trends Plant Sci 16(1), 2011
PMID: 20833098
Reducing PEX13 expression ameliorates physiological defects of late-acting peroxin mutants.
Ratzel SE, Lingard MJ, Woodward AW, Bartel B., Traffic 12(1), 2011
PMID: 20969679
The study of a SPATULA-like bHLH transcription factor expressed during peach (Prunus persica) fruit development.
Tani E, Tsaballa A, Stedel C, Kalloniati C, Papaefthimiou D, Polidoros A, Darzentas N, Ganopoulos I, Flemetakis E, Katinakis P, Tsaftaris A., Plant Physiol Biochem 49(6), 2011
PMID: 21324706
Recent advances in the transcriptional regulation of the flavonoid biosynthetic pathway.
Hichri I, Barrieu F, Bogs J, Kappel C, Delrot S, Lauvergeat V., J Exp Bot 62(8), 2011
PMID: 21278228
The shade avoidance syndrome in Arabidopsis: a fundamental role for atypical basic helix-loop-helix proteins as transcriptional cofactors.
Galstyan A, Cifuentes-Esquivel N, Bou-Torrent J, Martinez-Garcia JF., Plant J 66(2), 2011
PMID: 21205034
ABA-mediated transcriptional regulation in response to osmotic stress in plants.
Fujita Y, Fujita M, Shinozaki K, Yamaguchi-Shinozaki K., J Plant Res 124(4), 2011
PMID: 21416314
Evolutionary and comparative analysis of MYB and bHLH plant transcription factors.
Feller A, Machemer K, Braun EL, Grotewold E., Plant J 66(1), 2011
PMID: 21443626
Apple skin patterning is associated with differential expression of MYB10.
Telias A, Lin-Wang K, Stevenson DE, Cooney JM, Hellens RP, Allan AC, Hoover EE, Bradeen JM., BMC Plant Biol 11(), 2011
PMID: 21599973
Natural allelic variation defines a role for ATMYC1: trichome cell fate determination.
Symonds VV, Hatlestad G, Lloyd AM., PLoS Genet 7(6), 2011
PMID: 21695236
Leucoanthocyanidin Dioxygenase in Arabidopsis thaliana: characterization of mutant alleles and regulation by MYB-BHLH-TTG1 transcription factor complexes.
Appelhagen I, Jahns O, Bartelniewoehner L, Sagasser M, Weisshaar B, Stracke R., Gene 484(1-2), 2011
PMID: 21683773
MtbHLH1, a bHLH transcription factor involved in Medicago truncatula nodule vascular patterning and nodule to plant metabolic exchanges.
Godiard L, Lepage A, Moreau S, Laporte D, Verdenaud M, Timmers T, Gamas P., New Phytol 191(2), 2011
PMID: 21679315
Phytochrome signaling mechanisms.
Li J, Li G, Wang H, Wang Deng X., Arabidopsis Book 9(), 2011
PMID: 22303272
The JAZ proteins: a crucial interface in the jasmonate signaling cascade.
Pauwels L, Goossens A., Plant Cell 23(9), 2011
PMID: 21963667
INDEHISCENT and SPATULA interact to specify carpel and valve margin tissue and thus promote seed dispersal in Arabidopsis.
Girin T, Paicu T, Stephenson P, Fuentes S, Körner E, O'Brien M, Sorefan K, Wood TA, Balanzá V, Ferrándiz C, Smyth DR, Østergaard L., Plant Cell 23(10), 2011
PMID: 21990939
Biochemical and molecular analysis of pink tomatoes: deregulated expression of the gene encoding transcription factor SlMYB12 leads to pink tomato fruit color.
Ballester AR, Molthoff J, de Vos R, Hekkert Bt, Orzaez D, Fernández-Moreno JP, Tripodi P, Grandillo S, Martin C, Heldens J, Ykema M, Granell A, Bovy A., Plant Physiol 152(1), 2010
PMID: 19906891
Origin and diversification of basic-helix-loop-helix proteins in plants.
Pires N, Dolan L., Mol Biol Evol 27(4), 2010
PMID: 19942615
A new family of ferritin genes from Lupinus luteus--comparative analysis of plant ferritins, their gene structure, and evolution.
Strozycki PM, Szymanski M, Szczurek A, Barciszewski J, Figlerowicz M., Mol Biol Evol 27(1), 2010
PMID: 19726535
Acosta IF, Farmer EE., Arabidopsis Book 8(), 2010
PMID: 22303255
Isolation of WDR and bHLH genes related to flavonoid synthesis in grapevine (Vitis vinifera L.).
Matus JT, Poupin MJ, Cañón P, Bordeu E, Alcalde JA, Arce-Johnson P., Plant Mol Biol 72(6), 2010
PMID: 20112051
The ABORTED MICROSPORES regulatory network is required for postmeiotic male reproductive development in Arabidopsis thaliana.
Xu J, Yang C, Yuan Z, Zhang D, Gondwe MY, Ding Z, Liang W, Zhang D, Wilson ZA., Plant Cell 22(1), 2010
PMID: 20118226
Nitrate-responsive miR393/AFB3 regulatory module controls root system architecture in Arabidopsis thaliana.
Vidal EA, Araus V, Lu C, Parry G, Green PJ, Coruzzi GM, Gutiérrez RA., Proc Natl Acad Sci U S A 107(9), 2010
PMID: 20142497
Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
Skinner MK, Rawls A, Wilson-Rawls J, Roalson EH., Differentiation 80(1), 2010
PMID: 20219281
Identification of specific DNA binding residues in the TCP family of transcription factors in Arabidopsis.
Aggarwal P, Das Gupta M, Joseph AP, Chatterjee N, Srinivasan N, Nath U., Plant Cell 22(4), 2010
PMID: 20363772
Genome-wide classification and evolutionary analysis of the bHLH family of transcription factors in Arabidopsis, poplar, rice, moss, and algae.
Carretero-Paulet L, Galstyan A, Roig-Villanova I, Martínez-García JF, Bilbao-Castro JR, Robertson DL., Plant Physiol 153(3), 2010
PMID: 20472752
MYB transcription factors in Arabidopsis.
Dubos C, Stracke R, Grotewold E, Weisshaar B, Martin C, Lepiniec L., Trends Plant Sci 15(10), 2010
PMID: 20674465
The bHLH transcription factor POPEYE regulates response to iron deficiency in Arabidopsis roots.
Long TA, Tsukagoshi H, Busch W, Lahner B, Salt DE, Benfey PN., Plant Cell 22(7), 2010
PMID: 20675571
Gibberellins control fruit patterning in Arabidopsis thaliana.
Arnaud N, Girin T, Sorefan K, Fuentes S, Wood TA, Lawrenson T, Sablowski R, Østergaard L., Genes Dev 24(19), 2010
PMID: 20889713
Three non-autonomous signals collaborate for nuclear targeting of CrMYC2, a Catharanthus roseus bHLH transcription factor.
Hedhili S, De Mattei MV, Coudert Y, Bourrié I, Bigot Y, Gantet P., BMC Res Notes 3(), 2010
PMID: 21073696
A new dominant Arabidopsis transparent testa mutant, sk21-D, and modulation of seed flavonoid biosynthesis by KAN4.
Gao P, Li X, Cui D, Wu L, Parkin I, Gruber MY., Plant Biotechnol J 8(9), 2010
PMID: 20444210
Don't 'leaf' now. The making of a fruit.
Østergaard L., Curr Opin Plant Biol 12(1), 2009
PMID: 19013099
Multiple repeats of a promoter segment causes transcription factor autoregulation in red apples.
Espley RV, Brendolise C, Chagné D, Kutty-Amma S, Green S, Volz R, Putterill J, Schouten HJ, Gardiner SE, Hellens RP, Allan AC., Plant Cell 21(1), 2009
PMID: 19151225
Submergence-inducible and circadian rhythmic basic helix-loop-helix protein gene in Nicotiana tabacum.
Ko DK, Lee MO, Hahn JS, Kim BG, Hong CB., J Plant Physiol 166(10), 2009
PMID: 19215997
Impact of environmental and genetic factors on expression of maize gene classes: Relevance to grain composition
Harrigan GeorgeG, Stork LeAnnaG, Riordan SusanG, Reynolds TraceyL, Taylor JPhilip, Masucci JamesD, Cao Yongwei, LeDeaux JohnR, Pandravada Anand, Glenn KevinC., J Food Compost Anal 22(2), 2009
PMID: IND44188767
Genomic expression profiling of mature soybean (Glycine max) pollen.
Haerizadeh F, Wong CE, Bhalla PL, Gresshoff PM, Singh MB., BMC Plant Biol 9(), 2009
PMID: 19265555
FORMOSA controls cell division and expansion during floral development in Antirrhinum majus.
Delgado-Benarroch L, Causier B, Weiss J, Egea-Cortines M., Planta 229(6), 2009
PMID: 19271234
Plant oxylipins: COI1/JAZs/MYC2 as the core jasmonic acid-signalling module.
Chini A, Boter M, Solano R., FEBS J 276(17), 2009
PMID: 19663905
Conservation of lotus and Arabidopsis basic helix-loop-helix proteins reveals new players in root hair development.
Karas B, Amyot L, Johansen C, Sato S, Tabata S, Kawaguchi M, Szczyglowski K., Plant Physiol 151(3), 2009
PMID: 19675148
Top hits in contemporary JAZ: an update on jasmonate signaling.
Chung HS, Niu Y, Browse J, Howe GA., Phytochemistry 70(13-14), 2009
PMID: 19800644
Transcriptional regulation of anthocyanin biosynthesis in red cabbage.
Yuan Y, Chiu LW, Li L., Planta 230(6), 2009
PMID: 19756724
Functional characterization of the Arabidopsis bHLH92 transcription factor in abiotic stress.
Jiang Y, Yang B, Deyholos MK., Mol Genet Genomics 282(5), 2009
PMID: 19760256
The Arabidopsis B-box zinc finger family.
Khanna R, Kronmiller B, Maszle DR, Coupland G, Holm M, Mizuno T, Wu SH., Plant Cell 21(11), 2009
PMID: 19920209
Jasmonate controls late development stages of petal growth in Arabidopsis thaliana.
Brioudes F, Joly C, Szécsi J, Varaud E, Leroux J, Bellvert F, Bertrand C, Bendahmane M., Plant J 60(6), 2009
PMID: 19765234
The Arabidopsis phytochrome-interacting factor PIF7, together with PIF3 and PIF4, regulates responses to prolonged red light by modulating phyB levels.
Leivar P, Monte E, Al-Sady B, Carle C, Storer A, Alonso JM, Ecker JR, Quail PH., Plant Cell 20(2), 2008
PMID: 18252845
MYB transcription factors that colour our fruit.
Allan AC, Hellens RP, Laing WA., Trends Plant Sci 13(3), 2008
PMID: 18280199
FIT interacts with AtbHLH38 and AtbHLH39 in regulating iron uptake gene expression for iron homeostasis in Arabidopsis.
Yuan Y, Wu H, Wang N, Li J, Zhao W, Du J, Wang D, Ling HQ., Cell Res 18(3), 2008
PMID: 18268542
Tobacco transcription factors: novel insights into transcriptional regulation in the Solanaceae.
Rushton PJ, Bokowiec MT, Han S, Zhang H, Brannock JF, Chen X, Laudeman TW, Timko MP., Plant Physiol 147(1), 2008
PMID: 18337489
Antagonistic jacalin-related lectins regulate the size of ER body-type beta-glucosidase complexes in Arabidopsis thaliana.
Nagano AJ, Fukao Y, Fujiwara M, Nishimura M, Hara-Nishimura I., Plant Cell Physiol 49(6), 2008
PMID: 18467340
MYBL2 is a new regulator of flavonoid biosynthesis in Arabidopsis thaliana.
Dubos C, Le Gourrierec J, Baudry A, Huep G, Lanet E, Debeaujon I, Routaboul JM, Alboresi A, Weisshaar B, Lepiniec L., Plant J 55(6), 2008
PMID: 18532978
RETARDED GROWTH OF EMBRYO1, a new basic helix-loop-helix protein, expresses in endosperm to control embryo growth.
Kondou Y, Nakazawa M, Kawashima M, Ichikawa T, Yoshizumi T, Suzuki K, Ishikawa A, Koshi T, Matsui R, Muto S, Matsui M., Plant Physiol 147(4), 2008
PMID: 18567831
PAR1 and PAR2 integrate shade and hormone transcriptional networks.
Bou-Torrent J, Roig-Villanova I, Galstyan A, Martínez-García JF., Plant Signal Behav 3(7), 2008
PMID: 19704482
Structure and functional analysis of wheat ICE (inducer of CBF expression) genes.
Badawi M, Reddy YV, Agharbaoui Z, Tominaga Y, Danyluk J, Sarhan F, Houde M., Plant Cell Physiol 49(8), 2008
PMID: 18635580
Gene expression analysis in citrus reveals the role of gibberellins on photosynthesis and stress.
Huerta L, Forment J, Gadea J, Fagoaga C, Peña L, Pérez-Amador MA, García-Martínez JL., Plant Cell Environ 31(11), 2008
PMID: 18684239
IT3F: a web-based tool for functional analysis of transcription factors in plants.
Bailey PC, Dicks J, Wang TL, Martin C., Phytochemistry 69(13), 2008
PMID: 18771782
Red colouration in apple fruit is due to the activity of the MYB transcription factor, MdMYB10.
Espley RV, Hellens RP, Putterill J, Stevenson DE, Kutty-Amma S, Allan AC., Plant J 49(3), 2007
PMID: 17181777
Termination of asymmetric cell division and differentiation of stomata.
Pillitteri LJ, Sloan DB, Bogenschutz NL, Torii KU., Nature 445(7127), 2007
PMID: 17183267
Stomatal development.
Bergmann DC, Sack FD., Annu Rev Plant Biol 58(), 2007
PMID: 17201685
Iron assimilation and transcription factor controlled synthesis of riboflavin in plants.
Vorwieger A, Gryczka C, Czihal A, Douchkov D, Tiedemann J, Mock HP, Jakoby M, Weisshaar B, Saalbach I, Bäumlein H., Planta 226(1), 2007
PMID: 17260143
Origin and diversification of the basic helix-loop-helix gene family in metazoans: insights from comparative genomics.
Simionato E, Ledent V, Richards G, Thomas-Chollier M, Kerner P, Coornaert D, Degnan BM, Vervoort M., BMC Evol Biol 7(), 2007
PMID: 17335570
Bauer P, Ling HQ, Guerinot ML., Plant Physiol Biochem 45(5), 2007
PMID: 17466530
Iron deficiency-mediated stress regulation of four subgroup Ib BHLH genes in Arabidopsis thaliana.
Wang HY, Klatte M, Jakoby M, Bäumlein H, Weisshaar B, Bauer P., Planta 226(4), 2007
PMID: 17516080
An ancient mechanism controls the development of cells with a rooting function in land plants.
Menand B, Yi K, Jouannic S, Hoffmann L, Ryan E, Linstead P, Schaefer DG, Dolan L., Science 316(5830), 2007
PMID: 17556585
Maize Lc transcription factor enhances biosynthesis of anthocyanins, distinct proanthocyanidins and phenylpropanoids in apple (Malus domestica Borkh.).
Li H, Flachowsky H, Fischer TC, Hanke MV, Forkmann G, Treutter D, Schwab W, Hoffmann T, Szankowski I., Planta 226(5), 2007
PMID: 17618453
Overexpression of TaVRN1 in Arabidopsis promotes early flowering and alters development.
Adam H, Ouellet F, Kane NA, Agharbaoui Z, Major G, Tominaga Y, Sarhan F., Plant Cell Physiol 48(8), 2007
PMID: 17623742
Regulation of the Arabidopsis root vascular initial population by LONESOME HIGHWAY.
Ohashi-Ito K, Bergmann DC., Development 134(16), 2007
PMID: 17626058
Differential gene expression in Arabidopsis wild-type and mutant anthers: insights into anther cell differentiation and regulatory networks.
Wijeratne AJ, Zhang W, Sun Y, Liu W, Albert R, Zheng Z, Oppenheimer DG, Zhao D, Ma H., Plant J 52(1), 2007
PMID: 17666023
The basic helix loop helix domain of maize R links transcriptional regulation and histone modifications by recruitment of an EMSY-related factor.
Hernandez JM, Feller A, Morohashi K, Frame K, Grotewold E., Proc Natl Acad Sci U S A 104(43), 2007
PMID: 17940002
Interaction of shade avoidance and auxin responses: a role for two novel atypical bHLH proteins.
Roig-Villanova I, Bou-Torrent J, Galstyan A, Carretero-Paulet L, Portolés S, Rodríguez-Concepción M, Martínez-García JF., EMBO J 26(22), 2007
PMID: 17948056
Genetics and biochemistry of seed flavonoids.
Lepiniec L, Debeaujon I, Routaboul JM, Baudry A, Pourcel L, Nesi N, Caboche M., Annu Rev Plant Biol 57(), 2006
PMID: 16669768
Caught red-handed: Rc encodes a basic helix-loop-helix protein conditioning red pericarp in rice.
Sweeney MT, Thomson MJ, Pfeil BE, McCouch S., Plant Cell 18(2), 2006
PMID: 16399804
Genome-wide analysis of the ERF gene family in Arabidopsis and rice.
Nakano T, Suzuki K, Fujimura T, Shinshi H., Plant Physiol 140(2), 2006
PMID: 16407444
Genome-wide analysis of basic/helix-loop-helix transcription factor family in rice and Arabidopsis.
Li X, Duan X, Jiang H, Sun Y, Tang Y, Yuan Z, Guo J, Liang W, Chen L, Yin J, Ma H, Wang J, Zhang D., Plant Physiol 141(4), 2006
PMID: 16896230
BIGPETALp, a bHLH transcription factor is involved in the control of Arabidopsis petal size.
Szécsi J, Joly C, Bordji K, Varaud E, Cock JM, Dumas C, Bendahmane M., EMBO J 25(16), 2006
PMID: 16902407
An Arabidopsis basic helix-loop-helix leucine zipper protein modulates metal homeostasis and auxin conjugate responsiveness.
Rampey RA, Woodward AW, Hobbs BN, Tierney MP, Lahner B, Salt DE, Bartel B., Genetics 174(4), 2006
PMID: 17028341
bHLH class transcription factors take centre stage in phytochrome signalling.
Duek PD, Fankhauser C., Trends Plant Sci 10(2), 2005
PMID: 15708340
MYB-bHLH-WD40 protein complex and the evolution of cellular diversity.
Ramsay NA, Glover BJ., Trends Plant Sci 10(2), 2005
PMID: 15708343
The Arabidopsis R2R3 MYB proteins FOUR LIPS and MYB88 restrict divisions late in the stomatal cell lineage.
Lai LB, Nadeau JA, Lucas J, Lee EK, Nakagawa T, Zhao L, Geisler M, Sack FD., Plant Cell 17(10), 2005
PMID: 16155180
The Arabidopsis cold-responsive transcriptome and its regulation by ICE1.
Lee BH, Henderson DA, Zhu JK., Plant Cell 17(11), 2005
PMID: 16214899
Isolation, characterization, and pericycle-specific transcriptome analyses of the novel maize lateral and seminal root initiation mutant rum1.
Woll K, Borsuk LA, Stransky H, Nettleton D, Schnable PS, Hochholdinger F., Plant Physiol 139(3), 2005
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Light signal transduction in higher plants.
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