Nitrite-driven anaerobic methane oxidation by oxygenic bacteria

Ettwig KF, Butler MK, Le Paslier D, Pelletier E, Mangenot S, Kuypers MMM, Schreiber F, Dutilh BE, Zedelius J, de Beer D, Gloerich J, et al. (2010)
Nature 464(7288): 543-548.

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Abstract / Bemerkung
Only three biological pathways are known to produce oxygen: photosynthesis, chlorate respiration and the detoxification of reactive oxygen species. Here we present evidence for a fourth pathway, possibly of considerable geochemical and evolutionary importance. The pathway was discovered after metagenomic sequencing of an enrichment culture that couples anaerobic oxidation of methane with the reduction of nitrite to dinitrogen. The complete genome of the dominant bacterium, named 'Candidatus Methylomirabilis oxyfera', was assembled. This apparently anaerobic, denitrifying bacterium encoded, transcribed and expressed the well-established aerobic pathway for methane oxidation, whereas it lacked known genes for dinitrogen production. Subsequent isotopic labelling indicated that 'M. oxyfera' bypassed the denitrification intermediate nitrous oxide by the conversion of two nitric oxidemolecules to dinitrogen and oxygen, which was used to oxidize methane. These results extend our understanding of hydrocarbon degradation under anoxic conditions and explain the biochemical mechanism of a poorly understood freshwater methane sink. Because nitrogen oxides were already present on early Earth, our finding opens up the possibility that oxygen was available to microbial metabolism before the evolution of oxygenic photosynthesis.
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Nature
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464
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7288
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543-548
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Ettwig KF, Butler MK, Le Paslier D, et al. Nitrite-driven anaerobic methane oxidation by oxygenic bacteria. Nature. 2010;464(7288):543-548.
Ettwig, K. F., Butler, M. K., Le Paslier, D., Pelletier, E., Mangenot, S., Kuypers, M. M. M., Schreiber, F., et al. (2010). Nitrite-driven anaerobic methane oxidation by oxygenic bacteria. Nature, 464(7288), 543-548. doi:10.1038/nature08883
Ettwig, K. F., Butler, M. K., Le Paslier, D., Pelletier, E., Mangenot, S., Kuypers, M. M. M., Schreiber, F., Dutilh, B. E., Zedelius, J., de Beer, D., et al. (2010). Nitrite-driven anaerobic methane oxidation by oxygenic bacteria. Nature 464, 543-548.
Ettwig, K.F., et al., 2010. Nitrite-driven anaerobic methane oxidation by oxygenic bacteria. Nature, 464(7288), p 543-548.
K.F. Ettwig, et al., “Nitrite-driven anaerobic methane oxidation by oxygenic bacteria”, Nature, vol. 464, 2010, pp. 543-548.
Ettwig, K.F., Butler, M.K., Le Paslier, D., Pelletier, E., Mangenot, S., Kuypers, M.M.M., Schreiber, F., Dutilh, B.E., Zedelius, J., de Beer, D., Gloerich, J., Wessels, H.J.C.T., van Alen, T., Luesken, F., Wu, M.L., van de Pas-Schoonen, K.T., den Camp, H.J.M.O., Janssen-Megens, E.M., Francoijs, K.-J., Stunnenberg, H., Weissenbach, J., Jetten, M.S.M., Strous, M.: Nitrite-driven anaerobic methane oxidation by oxygenic bacteria. Nature. 464, 543-548 (2010).
Ettwig, Katharina F., Butler, Margaret K., Le Paslier, Denis, Pelletier, Eric, Mangenot, Sophie, Kuypers, Marcel M. M., Schreiber, Frank, Dutilh, Bas E., Zedelius, Johannes, de Beer, Dirk, Gloerich, Jolein, Wessels, Hans J. C. T., van Alen, Theo, Luesken, Francisca, Wu, Ming L., van de Pas-Schoonen, Katinka T., den Camp, Huub J. M. Op, Janssen-Megens, Eva M., Francoijs, Kees-Jan, Stunnenberg, Henk, Weissenbach, Jean, Jetten, Mike S. M., and Strous, Marc. “Nitrite-driven anaerobic methane oxidation by oxygenic bacteria”. Nature 464.7288 (2010): 543-548.

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Gene expression profiling of microbial activities and interactions in sediments under haloclines of E. Mediterranean deep hypersaline anoxic basins.
Edgcomb VP, Pachiadaki MG, Mara P, Kormas KA, Leadbetter ER, Bernhard JM., ISME J 10(11), 2016
PMID: 27093045
The Sponge Hologenome.
Webster NS, Thomas T., MBio 7(2), 2016
PMID: 27103626
Metagenomic analysis of rapid gravity sand filter microbial communities suggests novel physiology of Nitrospira spp.
Palomo A, Jane Fowler S, Gülay A, Rasmussen S, Sicheritz-Ponten T, Smets BF., ISME J 10(11), 2016
PMID: 27128989
Enzymatic Antioxidant Systems in Early Anaerobes: Theoretical Considerations.
Ślesak I, Ślesak H, Zimak-Piekarczyk P, Rozpądek P., Astrobiology 16(5), 2016
PMID: 27176812
Methane dependent denitrification- from ecosystem to laboratory-scale enrichment for engineering applications.
Bhattacharjee AS, Motlagh AM, Jetten MSM, Goel R., Water Res 99(), 2016
PMID: 27176548
Anaerobic methane oxidation coupled to nitrite reduction can be a potential methane sink in coastal environments.
Shen LD, Hu BL, Liu S, Chai XP, He ZF, Ren HX, Liu Y, Geng S, Wang W, Tang JL, Wang YM, Lou LP, Xu XY, Zheng P., Appl Microbiol Biotechnol 100(16), 2016
PMID: 27225473
Diversity and Distribution of Prokaryotes within a Shallow-Water Pockmark Field.
Giovannelli D, d'Errico G, Fiorentino F, Fattorini D, Regoli F, Angeletti L, Bakran-Petricioli T, Vetriani C, Yücel M, Taviani M, Manini E., Front Microbiol 7(), 2016
PMID: 27379070
A Modified SDS-Based DNA Extraction Method for High Quality Environmental DNA from Seafloor Environments.
Natarajan VP, Zhang X, Morono Y, Inagaki F, Wang F., Front Microbiol 7(), 2016
PMID: 27446026
Cr(VI) reduction coupled with anaerobic oxidation of methane in a laboratory reactor.
Lu YZ, Fu L, Ding J, Ding ZW, Li N, Zeng RJ., Water Res 102(), 2016
PMID: 27395029
Targeting tumor hypoxia with the epigenetic anticancer agent, RRx-001: a superagonist of nitric oxide generation.
Fens MH, Cabrales P, Scicinski J, Larkin SK, Suh JH, Kuypers FA, Oronsky N, Lybeck M, Oronsky A, Oronsky B., Med Oncol 33(8), 2016
PMID: 27377482
The Microbial Olympics 2016.
Nelson MB, Chase AB, Martiny JB, Stocker R, Nguyen J, Lloyd K, Oshiro RT, Kearns DB, Schneider JP, Ringel PD, Basler M, Olson CA, Vuong HE, Hsiao EY, Roller BR, Ackermann M, Smillie C, Chien D, Alm E, Jermy AJ., Nat Microbiol 1(8), 2016
PMID: 27573121
Biotic Interactions in Microbial Communities as Modulators of Biogeochemical Processes: Methanotrophy as a Model System.
Ho A, Angel R, Veraart AJ, Daebeler A, Jia Z, Kim SY, Kerckhof FM, Boon N, Bodelier PL., Front Microbiol 7(), 2016
PMID: 27602021
Methane production, oxidation and mitigation: A mechanistic understanding and comprehensive evaluation of influencing factors.
Malyan SK, Bhatia A, Kumar A, Gupta DK, Singh R, Kumar SS, Tomer R, Kumar O, Jain N., Sci Total Environ 572(), 2016
PMID: 27575427
A novel denitrifying methanotroph of the NC10 phylum and its microcolony.
He Z, Cai C, Wang J, Xu X, Zheng P, Jetten MS, Hu B., Sci Rep 6(), 2016
PMID: 27582299
Regional Variation of CH4 and N2 Production Processes in the Deep Aquifers of an Accretionary Prism.
Matsushita M, Ishikawa S, Nagai K, Hirata Y, Ozawa K, Mitsunobu S, Kimura H., Microbes Environ 31(3), 2016
PMID: 27592518
Effects of salinity on simultaneous reduction of perchlorate and nitrate in a methane-based membrane biofilm reactor.
Zhang Y, Chen JX, Wen LL, Tang Y, Zhao HP., Environ Sci Pollut Res Int 23(23), 2016
PMID: 27646453
Archaea catalyze iron-dependent anaerobic oxidation of methane.
Ettwig KF, Zhu B, Speth D, Keltjens JT, Jetten MSM, Kartal B., Proc Natl Acad Sci U S A 113(45), 2016
PMID: 27791118
[Microbiotes and metagenomics].
Weissenbach J, Sghir A., Med Sci (Paris) 32(11), 2016
PMID: 28008833
Ultrastructure and Viral Metagenome of Bacteriophages from an Anaerobic Methane Oxidizing Methylomirabilis Bioreactor Enrichment Culture.
Gambelli L, Cremers G, Mesman R, Guerrero S, Dutilh BE, Jetten MS, Op den Camp HJ, van Niftrik L., Front Microbiol 7(), 2016
PMID: 27877158
Nitrate- and nitrite-dependent anaerobic oxidation of methane.
Welte CU, Rasigraf O, Vaksmaa A, Versantvoort W, Arshad A, Op den Camp HJ, Jetten MS, Lüke C, Reimann J., Environ Microbiol Rep 8(6), 2016
PMID: 27753265
Methanotrophy under Versatile Conditions in the Water Column of the Ferruginous Meromictic Lake La Cruz (Spain).
Oswald K, Jegge C, Tischer J, Berg J, Brand A, Miracle MR, Soria X, Vicente E, Lehmann MF, Zopfi J, Schubert CJ., Front Microbiol 7(), 2016
PMID: 27891115
Responses of Methanogenic and Methanotrophic Communities to Elevated Atmospheric CO2 and Temperature in a Paddy Field.
Liu Y, Liu X, Cheng K, Li L, Zhang X, Zheng J, Zheng J, Pan G., Front Microbiol 7(), 2016
PMID: 27933055
Effect of inoculum sources on the enrichment of nitrite-dependent anaerobic methane-oxidizing bacteria.
He Z, Cai C, Shen L, Lou L, Zheng P, Xu X, Hu B., Appl Microbiol Biotechnol 99(2), 2015
PMID: 25186148
Whale-fall ecosystems: recent insights into ecology, paleoecology, and evolution.
Smith CR, Glover AG, Treude T, Higgs ND, Amon DJ., Ann Rev Mar Sci 7(), 2015
PMID: 25251277
Vertical distribution of nitrite-dependent anaerobic methane-oxidising bacteria in natural freshwater wetland soils.
Shen LD, Huang Q, He ZF, Lian X, Liu S, He YF, Lou LP, Xu XY, Zheng P, Hu BL., Appl Microbiol Biotechnol 99(1), 2015
PMID: 25242345
Field-scale tracking of active methane-oxidizing communities in a landfill cover soil reveals spatial and seasonal variability.
Henneberger R, Chiri E, Bodelier PE, Frenzel P, Lüke C, Schroth MH., Environ Microbiol 17(5), 2015
PMID: 25186436
Methane-fed microbial microcosms show differential community dynamics and pinpoint taxa involved in communal response.
Oshkin IY, Beck DA, Lamb AE, Tchesnokova V, Benuska G, McTaggart TL, Kalyuzhnaya MG, Dedysh SN, Lidstrom ME, Chistoserdova L., ISME J 9(5), 2015
PMID: 25333464
Aerobic and nitrite-dependent methane-oxidizing microorganisms in sediments of freshwater lakes on the Yunnan Plateau.
Liu Y, Zhang J, Zhao L, Li Y, Yang Y, Xie S., Appl Microbiol Biotechnol 99(5), 2015
PMID: 25698510
Methane oxidation by anaerobic archaea for conversion to liquid fuels.
Mueller TJ, Grisewood MJ, Nazem-Bokaee H, Gopalakrishnan S, Ferry JG, Wood TK, Maranas CD., J Ind Microbiol Biotechnol 42(3), 2015
PMID: 25427790
Methylobacterium extorquens: methylotrophy and biotechnological applications.
Ochsner AM, Sonntag F, Buchhaupt M, Schrader J, Vorholt JA., Appl Microbiol Biotechnol 99(2), 2015
PMID: 25432674
Biogeographical distribution of denitrifying anaerobic methane oxidizing bacteria in Chinese wetland ecosystems.
Zhu G, Zhou L, Wang Y, Wang S, Guo J, Long XE, Sun X, Jiang B, Hou Q, Jetten MS, Yin C., Environ Microbiol Rep 7(1), 2015
PMID: 25223900
Anaerobic oxidation of methane: an "active" microbial process.
Cui M, Ma A, Qi H, Zhuang X, Zhuang G., Microbiologyopen 4(1), 2015
PMID: 25530008
Implications of Downstream Nitrate Dosage in anaerobic sewers to control sulfide and methane emissions.
Auguet O, Pijuan M, Guasch-Balcells H, Borrego CM, Gutierrez O., Water Res 68(), 2015
PMID: 25462758
Selective Pressure of Temperature on Competition and Cross-Feeding within Denitrifying and Fermentative Microbial Communities.
Hanke A, Berg J, Hargesheimer T, Tegetmeyer HE, Sharp CE, Strous M., Front Microbiol 6(), 2015
PMID: 26779132
Methane sources in arctic thermokarst lake sediments on the North Slope of Alaska.
Matheus Carnevali PB, Rohrssen M, Williams MR, Michaud AB, Adams H, Berisford D, Love GD, Priscu JC, Rassuchine O, Hand KP, Murray AE., Geobiology 13(2), 2015
PMID: 25612141
Methanobactin from Methylocystis sp. strain SB2 affects gene expression and methane monooxygenase activity in Methylosinus trichosporium OB3b.
Farhan Ul-Haque M, Kalidass B, Vorobev A, Baral BS, DiSpirito AA, Semrau JD., Appl Environ Microbiol 81(7), 2015
PMID: 25616801
XoxF-type methanol dehydrogenase from the anaerobic methanotroph “Candidatus Methylomirabilis oxyfera”.
Wu ML, Wessels JC, Pol A, Op den Camp HJ, Jetten MS, van Niftrik L., Appl Environ Microbiol 81(4), 2015
PMID: 25527536
Rapid Reactivation of Deep Subsurface Microbes in the Presence of C-1 Compounds.
Rajala P, Bomberg M, Kietäväinen R, Kukkonen I, Ahonen L, Nyyssönen M, Itävaara M., Microorganisms 3(1), 2015
PMID: 27682076
Methane oxidation coupled to oxygenic photosynthesis in anoxic waters.
Milucka J, Kirf M, Lu L, Krupke A, Lam P, Littmann S, Kuypers MM, Schubert CJ., ISME J 9(9), 2015
PMID: 25679533
Global dispersion and local diversification of the methane seep microbiome.
Ruff SE, Biddle JF, Teske AP, Knittel K, Boetius A, Ramette A., Proc Natl Acad Sci U S A 112(13), 2015
PMID: 25775520
Genomics of Methylotrophy in Gram-Positive Methylamine-Utilizing Bacteria.
McTaggart TL, Beck DA, Setboonsarng U, Shapiro N, Woyke T, Lidstrom ME, Kalyuzhnaya MG, Chistoserdova L., Microorganisms 3(1), 2015
PMID: 27682081
(Per)chlorate-reducing bacteria can utilize aerobic and anaerobic pathways of aromatic degradation with (per)chlorate as an electron acceptor.
Carlström CI, Loutey D, Bauer S, Clark IC, Rohde RA, Iavarone AT, Lucas L, Coates JD., MBio 6(2), 2015
PMID: 25805732
Can meta-omics help to establish causality between contaminant biotransformations and genes or gene products?
Johnson DR, Helbling DE, Men Y, Fenner K., Environ Sci (Camb) 1(3), 2015
PMID: 27239323
Metabolic methanol: molecular pathways and physiological roles.
Dorokhov YL, Shindyapina AV, Sheshukova EV, Komarova TV., Physiol Rev 95(2), 2015
PMID: 25834233
The changing landscape of microbial biodiversity exploration and its implications for systematics.
Hedlund BP, Dodsworth JA, Staley JT., Syst Appl Microbiol 38(4), 2015
PMID: 25921438
Interactions of Methylotrophs with Plants and Other Heterotrophic Bacteria.
Iguchi H, Yurimoto H, Sakai Y., Microorganisms 3(2), 2015
PMID: 27682083
Patterns in wetland microbial community composition and functional gene repertoire associated with methane emissions.
He S, Malfatti SA, McFarland JW, Anderson FE, Pati A, Huntemann M, Tremblay J, Glavina del Rio T, Waldrop MP, Windham-Myers L, Tringe SG., MBio 6(3), 2015
PMID: 25991679
The role of paraffin oil on the interaction between denitrifying anaerobic methane oxidation and Anammox processes.
Fu L, Ding ZW, Ding J, Zhang F, Zeng RJ., Appl Microbiol Biotechnol 99(19), 2015
PMID: 26036704
Anaerobic Oxidation of Methane Coupled to Nitrite Reduction by Halophilic Marine NC10 Bacteria.
He Z, Geng S, Cai C, Liu S, Liu Y, Pan Y, Lou L, Zheng P, Xu X, Hu B., Appl Environ Microbiol 81(16), 2015
PMID: 26048927
Methylotrophs in natural habitats: current insights through metagenomics.
Chistoserdova L., Appl Microbiol Biotechnol 99(14), 2015
PMID: 26051673
XoxF encoding an alternative methanol dehydrogenase is widespread in coastal marine environments.
Taubert M, Grob C, Howat AM, Burns OJ, Dixon JL, Chen Y, Murrell JC., Environ Microbiol 17(10), 2015
PMID: 25943904
High rates of anaerobic methane oxidation in freshwater wetlands reduce potential atmospheric methane emissions.
Segarra KE, Schubotz F, Samarkin V, Yoshinaga MY, Hinrichs KU, Joye SB., Nat Commun 6(), 2015
PMID: 26123199
The origin, source, and cycling of methane in deep crystalline rock biosphere.
Kietäväinen R, Purkamo L., Front Microbiol 6(), 2015
PMID: 26236303
Light-Dependent Aerobic Methane Oxidation Reduces Methane Emissions from Seasonally Stratified Lakes.
Oswald K, Milucka J, Brand A, Littmann S, Wehrli B, Kuypers MM, Schubert CJ., PLoS One 10(7), 2015
PMID: 26193458
New primers for detecting and quantifying denitrifying anaerobic methane oxidation archaea in different ecological niches.
Ding J, Ding ZW, Fu L, Lu YZ, Cheng SH, Zeng RJ., Appl Microbiol Biotechnol 99(22), 2015
PMID: 26300291
Microbial Response to Experimentally Controlled Redox Transitions at the Sediment Water Interface.
Frindte K, Allgaier M, Grossart HP, Eckert W., PLoS One 10(11), 2015
PMID: 26599000
Microbiology: A division of labour combined.
Kuypers MM., Nature 528(7583), 2015
PMID: 26701051
A Metagenomics-Based Metabolic Model of Nitrate-Dependent Anaerobic Oxidation of Methane by Methanoperedens-Like Archaea.
Arshad A, Speth DR, de Graaf RM, Op den Camp HJ, Jetten MS, Welte CU., Front Microbiol 6(), 2015
PMID: 26733968
Genomic Reconstruction of an Uncultured Hydrothermal Vent Gammaproteobacterial Methanotroph (Family Methylothermaceae) Indicates Multiple Adaptations to Oxygen Limitation.
Skennerton CT, Ward LM, Michel A, Metcalfe K, Valiente C, Mullin S, Chan KY, Gradinaru V, Orphan VJ., Front Microbiol 6(), 2015
PMID: 26779119
Novel hydrocarbon monooxygenase genes in the metatranscriptome of a natural deep-sea hydrocarbon plume.
Li M, Jain S, Baker BJ, Taylor C, Dick GJ., Environ Microbiol 16(1), 2014
PMID: 23826624
The (d)evolution of methanotrophy in the Beijerinckiaceae--a comparative genomics analysis.
Tamas I, Smirnova AV, He Z, Dunfield PF., ISME J 8(2), 2014
PMID: 23985741
Metagenomic analysis of size-fractionated picoplankton in a marine oxygen minimum zone.
Ganesh S, Parris DJ, DeLong EF, Stewart FJ., ISME J 8(1), 2014
PMID: 24030599
Rare earth metals are essential for methanotrophic life in volcanic mudpots.
Pol A, Barends TR, Dietl A, Khadem AF, Eygensteyn J, Jetten MS, Op den Camp HJ., Environ Microbiol 16(1), 2014
PMID: 24034209
Distribution and diversity of nitrite-dependent anaerobic methane-oxidising bacteria in the sediments of the Qiantang River.
Shen LD, Liu S, Zhu Q, Li XY, Cai C, Cheng DQ, Lou LP, Xu XY, Zheng P, Hu BL., Microb Ecol 67(2), 2014
PMID: 24272281
Bacterial communities and syntrophic associations involved in anaerobic oxidation of methane process of the Sonora Margin cold seeps, Guaymas Basin.
Vigneron A, Cruaud P, Pignet P, Caprais JC, Gayet N, Cambon-Bonavita MA, Godfroy A, Toffin L., Environ Microbiol 16(9), 2014
PMID: 24238139
CH4 emission and conversion from A2O and SBR processes in full-scale wastewater treatment plants.
Liu Y, Cheng X, Lun X, Sun D., J Environ Sci (China) 26(1), 2014
PMID: 24649710
Metagenomic analysis of microbial consortium from natural crude oil that seeps into the marine ecosystem offshore Southern California.
Hawley ER, Piao H, Scott NM, Malfatti S, Pagani I, Huntemann M, Chen A, Glavina Del Rio T, Foster B, Copeland A, Jansson J, Pati A, Tringe S, Gilbert JA, Lorenson TD, Hess M., Stand Genomic Sci 9(3), 2014
PMID: 25197496
Manipulating conserved heme cavity residues of chlorite dismutase: effect on structure, redox chemistry, and reactivity.
Hofbauer S, Gysel K, Bellei M, Hagmüller A, Schaffner I, Mlynek G, Kostan J, Pirker KF, Daims H, Furtmüller PG, Battistuzzi G, Djinović-Carugo K, Obinger C., Biochemistry 53(1), 2014
PMID: 24364531
Methylomonas lenta sp. nov., a methanotroph isolated from manure and a denitrification tank.
Hoefman S, Heylen K, De Vos P., Int J Syst Evol Microbiol 64(pt 4), 2014
PMID: 24408530
The quest for a unified view of bacterial land colonization.
Wu H, Fang Y, Yu J, Zhang Z., ISME J 8(7), 2014
PMID: 24451209
Aquatic plant surface as a niche for methanotrophs.
Yoshida N, Iguchi H, Yurimoto H, Murakami A, Sakai Y., Front Microbiol 5(), 2014
PMID: 24550901
Methane emission and dynamics of methanotrophic and methanogenic communities in a flooded rice field ecosystem.
Lee HJ, Kim SY, Kim PJ, Madsen EL, Jeon CO., FEMS Microbiol Ecol 88(1), 2014
PMID: 24410836
Autotrophic carbon dioxide fixation via the Calvin-Benson-Bassham cycle by the denitrifying methanotroph "Candidatus Methylomirabilis oxyfera".
Rasigraf O, Kool DM, Jetten MS, Sinninghe Damsté JS, Ettwig KF., Appl Environ Microbiol 80(8), 2014
PMID: 24509918
Molecular evidence for nitrite-dependent anaerobic methane-oxidising bacteria in the Jiaojiang Estuary of the East Sea (China).
Li-Dong S, Qun Z, Shuai L, Ping D, Jiang-Ning Z, Dong-Qing C, Xiang-Yang X, Ping Z, Bao-Lan H., Appl Microbiol Biotechnol 98(11), 2014
PMID: 24515728
Chlorite dismutases - a heme enzyme family for use in bioremediation and generation of molecular oxygen.
Hofbauer S, Schaffner I, Furtmüller PG, Obinger C., Biotechnol J 9(4), 2014
PMID: 24519858
Genomic and transcriptomic analyses of the facultative methanotroph Methylocystis sp. strain SB2 grown on methane or ethanol.
Vorobev A, Jagadevan S, Jain S, Anantharaman K, Dick GJ, Vuilleumier S, Semrau JD., Appl Environ Microbiol 80(10), 2014
PMID: 24610846
Evidence for nitrite-dependent anaerobic methane oxidation as a previously overlooked microbial methane sink in wetlands.
Hu BL, Shen LD, Lian X, Zhu Q, Liu S, Huang Q, He ZF, Geng S, Cheng DQ, Lou LP, Xu XY, Zheng P, He YF., Proc Natl Acad Sci U S A 111(12), 2014
PMID: 24616523
Ecological perspectives on microbes involved in N-cycling.
Isobe K, Ohte N., Microbes Environ 29(1), 2014
PMID: 24621510
Methyloparacoccus murrellii gen. nov., sp. nov., a methanotroph isolated from pond water.
Hoefman S, van der Ha D, Iguchi H, Yurimoto H, Sakai Y, Boon N, Vandamme P, Heylen K, De Vos P., Int J Syst Evol Microbiol 64(pt 6), 2014
PMID: 24676728
Early diagenetic processes generate iron and manganese oxide layers in the sediments of Lake Baikal, Siberia.
Torres NT, Och LM, Hauser PC, Furrer G, Brandl H, Vologina E, Sturm M, Bürgmann H, Müller B., Environ Sci Process Impacts 16(4), 2014
PMID: 24619231
The drive to life on wet and icy worlds.
Russell MJ, Barge LM, Bhartia R, Bocanegra D, Bracher PJ, Branscomb E, Kidd R, McGlynn S, Meier DH, Nitschke W, Shibuya T, Vance S, White L, Kanik I., Astrobiology 14(4), 2014
PMID: 24697642
Bioconversion of natural gas to liquid fuel: opportunities and challenges.
Fei Q, Guarnieri MT, Tao L, Laurens LM, Dowe N, Pienkos PT., Biotechnol Adv 32(3), 2014
PMID: 24726715
Distribution and diversity of Verrucomicrobia methanotrophs in geothermal and acidic environments.
Sharp CE, Smirnova AV, Graham JM, Stott MB, Khadka R, Moore TR, Grasby SE, Strack M, Dunfield PF., Environ Microbiol 16(6), 2014
PMID: 24650084
Enrichment of denitrifying methanotrophic bacteria from municipal wastewater sludge in a membrane bioreactor at 20°C.
Kampman C, Temmink H, Hendrickx TL, Zeeman G, Buisman CJ., J Hazard Mater 274(), 2014
PMID: 24809733
Metatranscriptome of an anaerobic benzene-degrading, nitrate-reducing enrichment culture reveals involvement of carboxylation in benzene ring activation.
Luo F, Gitiafroz R, Devine CE, Gong Y, Hug LA, Raskin L, Edwards EA., Appl Environ Microbiol 80(14), 2014
PMID: 24795366
PQQ-dependent methanol dehydrogenases: rare-earth elements make a difference.
Keltjens JT, Pol A, Reimann J, Op den Camp HJ., Appl Microbiol Biotechnol 98(14), 2014
PMID: 24816778
Comparison of sulfate-reducing and conventional Anammox upflow anaerobic sludge blanket reactors.
Rikmann E, Zekker I, Tomingas M, Vabamäe P, Kroon K, Saluste A, Tenno T, Menert A, Loorits L, Rubin SS, Tenno T., J Biosci Bioeng 118(4), 2014
PMID: 24863179
Methane oxidation linked to chlorite dismutation.
Miller LG, Baesman SM, Carlström CI, Coates JD, Oremland RS., Front Microbiol 5(), 2014
PMID: 24987389
Structure of hydrocarbonoclastic nitrate-reducing bacterial communities in bioturbated coastal marine sediments.
Stauffert M, Cravo-Laureau C, Duran R., FEMS Microbiol Ecol 89(3), 2014
PMID: 24862403
The molecular evolution of the Qo motif.
Kao WC, Hunte C., Genome Biol Evol 6(7), 2014
PMID: 25115012
Metatranscriptomic analysis of arctic peat soil microbiota.
Tveit AT, Urich T, Svenning MM., Appl Environ Microbiol 80(18), 2014
PMID: 25015892
Simultaneous enrichment of denitrifying methanotrophs and anammox bacteria.
Ding ZW, Ding J, Fu L, Zhang F, Zeng RJ., Appl Microbiol Biotechnol 98(24), 2014
PMID: 25056292
Gammaproteobacterial methanotrophs dominate cold methane seeps in floodplains of West Siberian rivers.
Oshkin IY, Wegner CE, Lüke C, Glagolev MV, Filippov IV, Pimenov NV, Liesack W, Dedysh SN., Appl Environ Microbiol 80(19), 2014
PMID: 25063667
Biosphere frontiers of subsurface life in the sedimented hydrothermal system of Guaymas Basin.
Teske A, Callaghan AV, LaRowe DE., Front Microbiol 5(), 2014
PMID: 25132832
Effect of process design and operating parameters on aerobic methane oxidation in municipal WWTPs.
Daelman MRJ, Van Eynde T, van Loosdrecht MCM, Volcke EIP., Water Res 66(), 2014
PMID: 25225767
Expanding the verrucomicrobial methanotrophic world: description of three novel species of Methylacidimicrobium gen. nov.
van Teeseling MC, Pol A, Harhangi HR, van der Zwart S, Jetten MS, Op den Camp HJ, van Niftrik L., Appl Environ Microbiol 80(21), 2014
PMID: 25172849
The evolution of respiratory O2/NO reductases: an out-of-the-phylogenetic-box perspective.
Ducluzeau AL, Schoepp-Cothenet B, van Lis R, Baymann F, Russell MJ, Nitschke W., J R Soc Interface 11(98), 2014
PMID: 24968694
High abundance and diversity of nitrite-dependent anaerobic methane-oxidizing bacteria in a paddy field profile.
Zhou L, Wang Y, Long XE, Guo J, Zhu G., FEMS Microbiol Lett 360(1), 2014
PMID: 25109910
Iron oxides stimulate sulfate-driven anaerobic methane oxidation in seeps.
Sivan O, Antler G, Turchyn AV, Marlow JJ, Orphan VJ., Proc Natl Acad Sci U S A 111(40), 2014
PMID: 25246590
Evidence for the cooccurrence of nitrite-dependent anaerobic ammonium and methane oxidation processes in a flooded paddy field.
Shen LD, Liu S, Huang Q, Lian X, He ZF, Geng S, Jin RC, He YF, Lou LP, Xu XY, Zheng P, Hu BL., Appl Environ Microbiol 80(24), 2014
PMID: 25261523
Biological conversion of methane to liquid fuels: status and opportunities.
Ge X, Yang L, Sheets JP, Yu Z, Li Y., Biotechnol Adv 32(8), 2014
PMID: 25281583
Oxygen at nanomolar levels reversibly suppresses process rates and gene expression in anammox and denitrification in the oxygen minimum zone off northern Chile.
Dalsgaard T, Stewart FJ, Thamdrup B, De Brabandere L, Revsbech NP, Ulloa O, Canfield DE, DeLong EF., MBio 5(6), 2014
PMID: 25352619
A new analysis of Mars "Special Regions": findings of the second MEPAG Special Regions Science Analysis Group (SR-SAG2).
Rummel JD, Beaty DW, Jones MA, Bakermans C, Barlow NG, Boston PJ, Chevrier VF, Clark BC, de Vera JP, Gough RV, Hallsworth JE, Head JW, Hipkin VJ, Kieft TL, McEwen AS, Mellon MT, Mikucki JA, Nicholson WL, Omelon CR, Peterson R, Roden EE, Sherwood Lollar B, Tanaka KL, Viola D, Wray JJ., Astrobiology 14(11), 2014
PMID: 25401393
Anaerobic methane oxidation coupled to denitrification is the dominant methane sink in a deep lake.
Deutzmann JS, Stief P, Brandes J, Schink B., Proc Natl Acad Sci U S A 111(51), 2014
PMID: 25472842
Enrichment of denitrifying methane-oxidizing microorganisms using up-flow continuous reactors and batch cultures.
Hatamoto M, Kimura M, Sato T, Koizumi M, Takahashi M, Kawakami S, Araki N, Yamaguchi T., PLoS One 9(12), 2014
PMID: 25545013
Conceptualizing functional traits and ecological characteristics of methane-oxidizing bacteria as life strategies.
Ho A, Kerckhof FM, Luke C, Reim A, Krause S, Boon N, Bodelier PL., Environ Microbiol Rep 5(3), 2013
PMID: 23754714
Organic carbon transformations in high-Arctic peat soils: key functions and microorganisms.
Tveit A, Schwacke R, Svenning MM, Urich T., ISME J 7(2), 2013
PMID: 22955232
Anaerobic oxidation of methane in hypersaline cold seep sediments.
Maignien L, Parkes RJ, Cragg B, Niemann H, Knittel K, Coulon S, Akhmetzhanov A, Boon N., FEMS Microbiol Ecol 83(1), 2013
PMID: 22882187
Selection of associated heterotrophs by methane-oxidizing bacteria at different copper concentrations.
van der Ha D, Vanwonterghem I, Hoefman S, De Vos P, Boon N., Antonie Van Leeuwenhoek 103(3), 2013
PMID: 23104073
A genomic approach to the cryptic secondary metabolome of the anaerobic world.
Letzel AC, Pidot SJ, Hertweck C., Nat Prod Rep 30(3), 2013
PMID: 23263685
Biotechnologies for greenhouse gases (CH₄, N₂O, and CO₂) abatement: state of the art and challenges.
López JC, Quijano G, Souza TS, Estrada JM, Lebrero R, Muñoz R., Appl Microbiol Biotechnol 97(6), 2013
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Revisiting methanotrophic communities in sewage treatment plants.
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