Secondary structure and phylogenetic analysis of the internal transcribed spacers 1 and 2 of bush crickets (Orthoptera: Tettigoniidae: Barbitistini)

Ullrich B, Reinhold K, Niehuis O, Misof B (2010)
JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH 48(3): 219-228.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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Autor*in
Ullrich, Berit; Reinhold, KlausUniBi; Niehuis, Oliver; Misof, Bernhard
Abstract / Bemerkung
We inferred secondary structure models of the internal transcribed spacers (ITS) 1 and 2 of bush crickets using a combined comparative and thermodynamic approach. The inferred secondary structure models were used to account for interdependency of interacting nucleotides in a phylogenetic analysis of the bush cricket genus Poecilimon. Our analysis indicates that the two previously reported conformational structures (i.e., hairpin and ring) of ITS2 are likely to fold in bush crickets as well and that both predicted structures are similar to those proposed for other eukaryotes. Comparing predicted ITS1 secondary structure models proved to be difficult because of substantial variation in their nucleotide sequence length. Our study revealed that the phylogenetic signal of ITS1 and ITS2 is largely congruent with that preserved in the mitochondrial genes 16S rRNA, tRNA-Val and 12S rRNA. The phylogenetic signal in both the nuclear and the mitochondrial genome question the monophyly of the genus Poecilimon: species of the genera Poecilimonella, Parapoecilimon, Polysarcus and Phonochorion consistently cluster within Poecilimon.
Stichworte
tRNA-Val; 12S rRNA; rRNA; 16S; Poecilimon; rnasalsa; structure predictions; pfold; maximum parsimony; ITS1; ITS2
Erscheinungsjahr
2010
Zeitschriftentitel
JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH
Band
48
Ausgabe
3
Seite(n)
219-228
ISSN
0947-5745
eISSN
1439-0469
Page URI
https://pub.uni-bielefeld.de/record/1795014

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Ullrich B, Reinhold K, Niehuis O, Misof B. Secondary structure and phylogenetic analysis of the internal transcribed spacers 1 and 2 of bush crickets (Orthoptera: Tettigoniidae: Barbitistini). JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH. 2010;48(3):219-228.
Ullrich, B., Reinhold, K., Niehuis, O., & Misof, B. (2010). Secondary structure and phylogenetic analysis of the internal transcribed spacers 1 and 2 of bush crickets (Orthoptera: Tettigoniidae: Barbitistini). JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH, 48(3), 219-228. doi:10.1111/j.1439-0469.2009.00553.x
Ullrich, B., Reinhold, K., Niehuis, O., and Misof, B. (2010). Secondary structure and phylogenetic analysis of the internal transcribed spacers 1 and 2 of bush crickets (Orthoptera: Tettigoniidae: Barbitistini). JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH 48, 219-228.
Ullrich, B., et al., 2010. Secondary structure and phylogenetic analysis of the internal transcribed spacers 1 and 2 of bush crickets (Orthoptera: Tettigoniidae: Barbitistini). JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH, 48(3), p 219-228.
B. Ullrich, et al., “Secondary structure and phylogenetic analysis of the internal transcribed spacers 1 and 2 of bush crickets (Orthoptera: Tettigoniidae: Barbitistini)”, JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH, vol. 48, 2010, pp. 219-228.
Ullrich, B., Reinhold, K., Niehuis, O., Misof, B.: Secondary structure and phylogenetic analysis of the internal transcribed spacers 1 and 2 of bush crickets (Orthoptera: Tettigoniidae: Barbitistini). JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH. 48, 219-228 (2010).
Ullrich, Berit, Reinhold, Klaus, Niehuis, Oliver, and Misof, Bernhard. “Secondary structure and phylogenetic analysis of the internal transcribed spacers 1 and 2 of bush crickets (Orthoptera: Tettigoniidae: Barbitistini)”. JOURNAL OF ZOOLOGICAL SYSTEMATICS AND EVOLUTIONARY RESEARCH 48.3 (2010): 219-228.

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