Genomics of Actinobacteria: Tracing the evolutionary history of an ancient phylura

Ventura, Marco; Canchaya, Carlos; Tauch, Andreas; Chandra, Govind; Fitzgerald, Gerald F.; Chater, Keith F.; van Sinderen, Douwe

Genomics of Actinobacteria: Tracing the evolutionary history of an ancient phylura

Ventura M, Canchaya C, Tauch A, Chandra G, Fitzgerald GF, Chater KF, van Sinderen D (2007)
Microbiol Mol Biol Rev 71(3): 495-548.

Zeitschriftenaufsatz | Veröffentlicht | Englisch

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DOI

https://doi.org/10.1128/MMBR.00005-07

Autor*in

Ventura, Marco; Canchaya, Carlos; Tauch, Andreas^UniBi; Chandra, Govind; Fitzgerald, Gerald F.; Chater, Keith F.; van Sinderen, Douwe

Einrichtung

Centrum für Biotechnologie > Arbeitsgruppe A. Tauch
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie

Erscheinungsjahr

2007

Zeitschriftentitel

Microbiol Mol Biol Rev

Band

71

Ausgabe

3

Seite(n)

495-548

ISSN

1092-2172

Page URI

https://pub.uni-bielefeld.de/record/1632131

Zitieren

Ventura M, Canchaya C, Tauch A, et al. Genomics of Actinobacteria: Tracing the evolutionary history of an ancient phylura. Microbiol Mol Biol Rev. 2007;71(3):495-548.

Ventura, M., Canchaya, C., Tauch, A., Chandra, G., Fitzgerald, G. F., Chater, K. F., & van Sinderen, D. (2007). Genomics of Actinobacteria: Tracing the evolutionary history of an ancient phylura. Microbiol Mol Biol Rev, 71(3), 495-548. https://doi.org/10.1128/MMBR.00005-07

Ventura, Marco, Canchaya, Carlos, Tauch, Andreas, Chandra, Govind, Fitzgerald, Gerald F., Chater, Keith F., and van Sinderen, Douwe. 2007. “Genomics of Actinobacteria: Tracing the evolutionary history of an ancient phylura”. Microbiol Mol Biol Rev 71 (3): 495-548.

Ventura, M., Canchaya, C., Tauch, A., Chandra, G., Fitzgerald, G. F., Chater, K. F., and van Sinderen, D. (2007). Genomics of Actinobacteria: Tracing the evolutionary history of an ancient phylura. Microbiol Mol Biol Rev 71, 495-548.

Ventura, M., et al., 2007. Genomics of Actinobacteria: Tracing the evolutionary history of an ancient phylura. Microbiol Mol Biol Rev, 71(3), p 495-548.

M. Ventura, et al., “Genomics of Actinobacteria: Tracing the evolutionary history of an ancient phylura”, Microbiol Mol Biol Rev, vol. 71, 2007, pp. 495-548.

Ventura, M., Canchaya, C., Tauch, A., Chandra, G., Fitzgerald, G.F., Chater, K.F., van Sinderen, D.: Genomics of Actinobacteria: Tracing the evolutionary history of an ancient phylura. Microbiol Mol Biol Rev. 71, 495-548 (2007).

Ventura, Marco, Canchaya, Carlos, Tauch, Andreas, Chandra, Govind, Fitzgerald, Gerald F., Chater, Keith F., and van Sinderen, Douwe. “Genomics of Actinobacteria: Tracing the evolutionary history of an ancient phylura”. Microbiol Mol Biol Rev 71.3 (2007): 495-548.

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Greenhalgh K, Meyer KM, Aagaard KM, Wilmes P., Environ Microbiol 18(7), 2016
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Variations of rhizosphere bacterial communities in tea (Camellia sinensis L.) continuous cropping soil by high-throughput pyrosequencing approach.
Li YC, Li Z, Li ZW, Jiang YH, Weng BQ, Lin WX., J Appl Microbiol 121(3), 2016
PMID: 27377624

Evolutionary architecture of the infant-adapted group of Bifidobacterium species associated with the probiotic function.
Kwak MJ, Kwon SK, Yoon JK, Song JY, Seo JG, Chung MJ, Kim JF., Syst Appl Microbiol 39(7), 2016
PMID: 27524178

Biodegradation of nanocrystalline cellulose by two environmentally-relevant consortia.
Singh G, Chandoha-Lee C, Zhang W, Renneckar S, Vikesland PJ, Pruden A., Water Res 104(), 2016
PMID: 27522024

Corynebacterium ulcerans, an emerging human pathogen.
Hacker E, Antunes CA, Mattos-Guaraldi AL, Burkovski A, Tauch A., Future Microbiol 11(), 2016
PMID: 27545005

High quality draft genome sequences of Pseudomonas fulva DSM 17717(T), Pseudomonas parafulva DSM 17004(T) and Pseudomonas cremoricolorata DSM 17059(T) type strains.
Peña A, Busquets A, Gomila M, Mulet M, Gomila RM, Reddy TB, Huntemann M, Pati A, Ivanova N, Markowitz V, García-Valdés E, Göker M, Woyke T, Klenk HP, Kyrpides N, Lalucat J., Stand Genomic Sci 11(1), 2016
PMID: 27594974

Molecular evolutionary dynamics of cytochrome P450 monooxygenases across kingdoms: Special focus on mycobacterial P450s.
Parvez M, Qhanya LB, Mthakathi NT, Kgosiemang IK, Bamal HD, Pagadala NS, Xie T, Yang H, Chen H, Theron CW, Monyaki R, Raselemane SC, Salewe V, Mongale BL, Matowane RG, Abdalla SM, Booi WI, van Wyk M, Olivier D, Boucher CE, Nelson DR, Tuszynski JA, Blackburn JM, Yu JH, Mashele SS, Chen W, Syed K., Sci Rep 6(), 2016
PMID: 27616185

Immunoreactive Proteins of Bifidobacterium longum ssp. longum CCM 7952 and Bifidobacterium longum ssp. longum CCDM 372 Identified by Gnotobiotic Mono-Colonized Mice Sera, Immune Rabbit Sera and Non-immune Human Sera.
Górska S, Dylus E, Rudawska A, Brzozowska E, Srutkova D, Schwarzer M, Razim A, Kozakova H, Gamian A., Front Microbiol 7(), 2016
PMID: 27746766

Mycobacteriophages as Incubators for Intein Dissemination and Evolution.
Kelley DS, Lennon CW, SEA-PHAGES, Belfort M, Novikova O., MBio 7(5), 2016
PMID: 27703073

Community Composition and Abundance of Bacterial, Archaeal and Nitrifying Populations in Savanna Soils on Contrasting Bedrock Material in Kruger National Park, South Africa.
Rughöft S, Herrmann M, Lazar CS, Cesarz S, Levick SR, Trumbore SE, Küsel K., Front Microbiol 7(), 2016
PMID: 27807431

Changes in duodenal tissue-associated microbiota following hookworm infection and consecutive gluten challenges in humans with coeliac disease.
Giacomin P, Zakrzewski M, Jenkins TP, Su X, Al-Hallaf R, Croese J, de Vries S, Grant A, Mitreva M, Loukas A, Krause L, Cantacessi C., Sci Rep 6(), 2016
PMID: 27827438

Revisiting Corynebacterium glyciniphilum (ex Kubota et al., 1972) sp. nov., nom. rev., isolated from putrefied banana.
Al-Dilaimi A, Bednarz H, Lömker A, Niehaus K, Kalinowski J, Rückert C., Int J Syst Evol Microbiol 65(pt 1), 2015
PMID: 25323597

Discovery of a conjugative megaplasmid in Bifidobacterium breve.
Bottacini F, O'Connell Motherway M, Casey E, McDonnell B, Mahony J, Ventura M, van Sinderen D., Appl Environ Microbiol 81(1), 2015
PMID: 25326305

Distribution and interaction patterns of bacterial communities in an ornithogenic soil of Seymour Island, Antarctica.
Rampelotto PH, Barboza AD, Pereira AB, Triplett EW, Schaefer CE, de Oliveira Camargo FA, Roesch LF., Microb Ecol 69(3), 2015
PMID: 25342537

The impact of biochars on sorption and biodegradation of polycyclic aromatic hydrocarbons in soils--a review.
Anyika C, Abdul Majid Z, Ibrahim Z, Zakaria MP, Yahya A., Environ Sci Pollut Res Int 22(5), 2015
PMID: 25345923

Penicillin-binding proteins in Actinobacteria.
Ogawara H., J Antibiot (Tokyo) 68(4), 2015
PMID: 25351947

Evolution and diversity of the Ras superfamily of small GTPases in prokaryotes.
Wuichet K, Søgaard-Andersen L., Genome Biol Evol 7(1), 2015
PMID: 25480683

The effect of anthropogenic arsenic contamination on the earthworm microbiome.
Pass DA, Morgan AJ, Read DS, Field D, Weightman AJ, Kille P., Environ Microbiol 17(6), 2015
PMID: 25404571

Bacterial communities associated with surfaces of leafy greens: shift in composition and decrease in richness over time.
Dees MW, Lysøe E, Nordskog B, Brurberg MB., Appl Environ Microbiol 81(4), 2015
PMID: 25527554

Soil-borne microbiome: linking diversity to function.
Mendes LW, Tsai SM, Navarrete AA, de Hollander M, van Veen JA, Kuramae EE., Microb Ecol 70(1), 2015
PMID: 25586384

Phylogenetic diversity and biological activity of culturable Actinobacteria isolated from freshwater fish gut microbiota.
Jami M, Ghanbari M, Kneifel W, Domig KJ., Microbiol Res 175(), 2015
PMID: 25662514

Evolution of M. bovis BCG Vaccine: Is Niacin Production Still a Valid Biomarker?
Singh S, Kumar M, Singh P., Tuberc Res Treat 2015(), 2015
PMID: 25694828

Comparative genomic analysis of 45 type strains of the genus Bifidobacterium: a snapshot of its genetic diversity and evolution.
Sun Z, Zhang W, Guo C, Yang X, Liu W, Wu Y, Song Y, Kwok LY, Cui Y, Menghe B, Yang R, Hu L, Zhang H., PLoS One 10(2), 2015
PMID: 25658111

Comprehensive microbial analysis of combined mesophilic anaerobic-thermophilic aerobic process treating high-strength food wastewater.
Jang HM, Ha JH, Park JM, Kim MS, Sommer SG., Water Res 73(), 2015
PMID: 25689817

Insights from genomes of representatives of the human gut commensal Bifidobacterium bifidum.
Duranti S, Milani C, Lugli GA, Turroni F, Mancabelli L, Sanchez B, Ferrario C, Viappiani A, Mangifesta M, Mancino W, Gueimonde M, Margolles A, van Sinderen D, Ventura M., Environ Microbiol 17(7), 2015
PMID: 25523018

Outbreak with clonally related isolates of Corynebacterium ulcerans in a group of water rats.
Eisenberg T, Mauder N, Contzen M, Rau J, Ewers C, Schlez K, Althoff G, Schauerte N, Geiger C, Margos G, Konrad R, Sing A., BMC Microbiol 15(), 2015
PMID: 25887321

Isolation and characterization of onion degrading bacteria from onion waste produced in South Buenos Aires province, Argentina
Rinland ME, Gómez MA., World J Microbiol Biotechnol 31(3), 2015
PMID: IND601213032

Bifidobacterium lemurum sp. nov., from faeces of the ring-tailed lemur (Lemur catta).
Modesto M, Michelini S, Stefanini I, Sandri C, Spiezio C, Pisi A, Filippini G, Biavati B, Mattarelli P., Int J Syst Evol Microbiol 65(pt 6), 2015
PMID: 25736415

Bacterial diversity associated with wild caught Anopheles mosquitoes from Dak Nong Province, Vietnam using culture and DNA fingerprint.
Ngo CT, Aujoulat F, Veas F, Jumas-Bilak E, Manguin S., PLoS One 10(3), 2015
PMID: 25747513

Corynebacterium glucuronolyticum causing genitourinary tract infection: Case report and review of the literature.
Gherardi G, Di Bonaventura G, Pompilio A, Savini V., IDCases 2(2), 2015
PMID: 26793456

Genomics of microbial plasmids: classification and identification based on replication and transfer systems and host taxonomy.
Shintani M, Sanchez ZK, Kimbara K., Front Microbiol 6(), 2015
PMID: 25873913

Comparative investigation of the various determinants that influence the codon and amino acid usage patterns in the genus Bifidobacterium.
Roy A, Mukhopadhyay S, Sarkar I, Sen A., World J Microbiol Biotechnol 31(6), 2015
PMID: 25842224

Homology-independent metrics for comparative genomics.
Coutinho TJ, Franco GR, Lobo FP., Comput Struct Biotechnol J 13(), 2015
PMID: 26029354

Classification and identification of pigmented cocci bacteria relevant to the soil environment via Raman spectroscopy.
Kumar V, Kampe B, Rösch P, Popp J., Environ Sci Pollut Res Int 22(24), 2015
PMID: 25940486

Corynebacterium urealyticum: a comprehensive review of an understated organism.
Salem N, Salem L, Saber S, Ismail G, Bluth MH., Infect Drug Resist 8(), 2015
PMID: 26056481

Bacterial iron-sulfur cluster sensors in mammalian pathogens.
Miller HK, Auerbuch V., Metallomics 7(6), 2015
PMID: 25738802

Comparative investigation of the various determinants that influence the codon and amino acid usage patterns in the genus Bifidobacterium
Roy A, Mukhopadhyay S, Sarkar I, Sen A., World J Microbiol Biotechnol 31(6), 2015
PMID: IND601328759

Multi-Analytical Approach Reveals Potential Microbial Indicators in Soil for Sugarcane Model Systems.
Navarrete AA, Diniz TR, Braga LP, Silva GG, Franchini JC, Rossetto R, Edwards RA, Tsai SM., PLoS One 10(6), 2015
PMID: 26057123

Insights into the evolution of enzyme substrate promiscuity after the discovery of (βα)₈ isomerase evolutionary intermediates from a diverse metagenome.
Noda-García L, Juárez-Vázquez AL, Ávila-Arcos MC, Verduzco-Castro EA, Montero-Morán G, Gaytán P, Carrillo-Tripp M, Barona-Gómez F., BMC Evol Biol 15(), 2015
PMID: 26058375

Bacteria Present in Comadia redtenbacheri Larvae (Lepidoptera: Cossidae).
Hernández-Flores L, Llanderal-Cázares C, Guzmán-Franco AW, Aranda-Ocampo S., J Med Entomol 52(5), 2015
PMID: 26336239

The airway microbiome in patients with severe asthma: Associations with disease features and severity.
Huang YJ, Nariya S, Harris JM, Lynch SV, Choy DF, Arron JR, Boushey H., J Allergy Clin Immunol 136(4), 2015
PMID: 26220531

Planktonic and sedimentary bacterial diversity of Lake Sayram in summer.
Fang L, Chen L, Liu Y, Tao W, Zhang Z, Liu H, Tang Y., Microbiologyopen 4(5), 2015
PMID: 26242906

Mangrove rare actinobacteria: taxonomy, natural compound, and discovery of bioactivity.
Azman AS, Othman I, Velu SS, Chan KG, Lee LH., Front Microbiol 6(), 2015
PMID: 26347734

Effects of octahedral molecular sieve on treatment performance, microbial metabolism, and microbial community in expanded granular sludge bed reactor.
Pan F, Xu A, Xia D, Yu Y, Chen G, Meyer M, Zhao D, Huang CH, Wu Q, Fu J., Water Res 87(), 2015
PMID: 26397455

Thermophilic and alkaliphilic Actinobacteria: biology and potential applications.
Shivlata L, Satyanarayana T., Front Microbiol 6(), 2015
PMID: 26441937

Antitumor compounds from Streptomyces sp. KML-2, isolated from Khewra salt mines, Pakistan.
Aftab U, Zechel DL, Sajid I., Biol Res 48(), 2015
PMID: 26466995

Pangenome analysis of Bifidobacterium longum and site-directed mutagenesis through by-pass of restriction-modification systems.
O'Callaghan A, Bottacini F, O'Connell Motherway M, van Sinderen D., BMC Genomics 16(), 2015
PMID: 26489930

Microbiomes of the dust particles collected from the International Space Station and Spacecraft Assembly Facilities.
Checinska A, Probst AJ, Vaishampayan P, White JR, Kumar D, Stepanov VG, Fox GE, Nilsson HR, Pierson DL, Perry J, Venkateswaran K., Microbiome 3(), 2015
PMID: 26502721

Draft genome sequence of Cellulomonas carbonis T26(T) and comparative analysis of six Cellulomonas genomes.
Zhuang W, Zhang S, Xia X, Wang G., Stand Genomic Sci 10(), 2015
PMID: 26587181

Pupylation as a signal for proteasomal degradation in bacteria.
Striebel F, Imkamp F, Özcelik D, Weber-Ban E., Biochim Biophys Acta 1843(1), 2014
PMID: 23557784

Bifidobacteria and humans: our special friends, from ecological to genomics perspectives.
Ventura M, Turroni F, Lugli GA, van Sinderen D., J Sci Food Agric 94(2), 2014
PMID: 23963950

Developmental biology of Streptomyces from the perspective of 100 actinobacterial genome sequences.
Chandra G, Chater KF., FEMS Microbiol Rev 38(3), 2014
PMID: 24164321

Characterization of the bacterioplankton community and its antibiotic resistance genes in the Baltic Sea.
Tiirik K, Nõlvak H, Oopkaup K, Truu M, Preem JK, Heinaru A, Truu J., Biotechnol Appl Biochem 61(1), 2014
PMID: 23941523

Bifidobacteria and humans: our special friends, from ecological to genomics perspectives
Ventura M, Turroni F, Lugli GA, van Sinderen D., J Sci Food Agric 94(2), 2014
PMID: IND500711528

Identification and characterization of the serine/threonine protein kinases in Bifidobacterium.
Nezametdinova VZ, Zakharevich NV, Alekseeva MG, Averina OV, Mavletova DA, Danilenko VN., Arch Microbiol 196(2), 2014
PMID: 24395073

The Genome Sequence of Bifidobacterium moukalabense DSM 27321 Highlights the Close Phylogenetic Relatedness with the Bifidobacterium dentium Taxon.
Lugli GA, Duranti S, Milani C, Turroni F, Viappiani A, Mangifesta M, van Sinderen D, Ventura M., Genome Announc 2(1), 2014
PMID: 24558236

Expression of fluorescent proteins in bifidobacteria for analysis of host-microbe interactions.
Grimm V, Gleinser M, Neu C, Zhurina D, Riedel CU., Appl Environ Microbiol 80(9), 2014
PMID: 24584243

Comparative genomics of the Bifidobacterium breve taxon.
Bottacini F, O'Connell Motherway M, Kuczynski J, O'Connell KJ, Serafini F, Duranti S, Milani C, Turroni F, Lugli GA, Zomer A, Zhurina D, Riedel C, Ventura M, van Sinderen D., BMC Genomics 15(), 2014
PMID: 24581150

Phylogenetic diversity and biological activity of actinobacteria isolated from the Chukchi Shelf marine sediments in the Arctic Ocean.
Yuan M, Yu Y, Li HR, Dong N, Zhang XH., Mar Drugs 12(3), 2014
PMID: 24663116

Small non-coding RNAs in streptomycetes.
Heueis N, Vockenhuber MP, Suess B., RNA Biol 11(5), 2014
PMID: 24667326

Use of Metagenomics and Isolation of Actinobacteria in Brazil's Atlantic Rainforest Soil for Antimicrobial Prospecting.
Assis DA, Rezende RP, Dias JC., ISRN Biotechnol 2014(), 2014
PMID: 25937991

The relationship between Corynebacterium pseudotuberculosis biovar equi phenotype with location and extent of lesions in horses.
Britz E, Spier SJ, Kass PH, Edman JM, Foley JE., Vet J 200(2), 2014
PMID: 24703322

Building a better bacillus: the emergence of Mycobacterium tuberculosis.
Wang J, Behr MA., Front Microbiol 5(), 2014
PMID: 24765091

International Space Station environmental microbiome - microbial inventories of ISS filter debris.
Venkateswaran K, Vaishampayan P, Cisneros J, Pierson DL, Rogers SO, Perry J., Appl Microbiol Biotechnol 98(14), 2014
PMID: 24695826

Bacterial community structure in two permafrost wetlands on the Tibetan Plateau and Sanjiang Plain, China.
Yun J, Ju Y, Deng Y, Zhang H., Microb Ecol 68(2), 2014
PMID: 24718907

Actinomycetes from Red Sea sponges: sources for chemical and phylogenetic diversity.
Abdelmohsen UR, Yang C, Horn H, Hajjar D, Ravasi T, Hentschel U., Mar Drugs 12(5), 2014
PMID: 24824024

Bacterial phylogeny structures soil resistomes across habitats.
Forsberg KJ, Patel S, Gibson MK, Lauber CL, Knight R, Fierer N, Dantas G., Nature 509(7502), 2014
PMID: 24847883

Airway microbiome dynamics in exacerbations of chronic obstructive pulmonary disease.
Huang YJ, Sethi S, Murphy T, Nariya S, Boushey HA, Lynch SV., J Clin Microbiol 52(8), 2014
PMID: 24850358

On the limits of computational functional genomics for bacterial lifestyle prediction.
Barbosa E, Röttger R, Hauschild AC, Azevedo V, Baumbach J., Brief Funct Genomics 13(5), 2014
PMID: 24855068

Transcription of two adjacent carbohydrate utilization gene clusters in Bifidobacterium breve UCC2003 is controlled by LacI- and repressor open reading frame kinase (ROK)-type regulators.
O'Connell KJ, Motherway MO, Liedtke A, Fitzgerald GF, Paul Ross R, Stanton C, Zomer A, van Sinderen D., Appl Environ Microbiol 80(12), 2014
PMID: 24705323

Illumina sequencing-based analyses of bacterial communities during short-chain fatty-acid production from food waste and sewage sludge fermentation at different pH values.
Cheng W, Chen H, Yan S, Su J., World J Microbiol Biotechnol 30(9), 2014
PMID: 24894538

Copper Tube Pitting in Santa Fe Municipal Water Caused by Microbial Induced Corrosion.
Burleigh TD, Gierke CG, Fredj N, Boston PJ., Materials (Basel) 7(6), 2014
PMID: 28788679

Recovering glycoside hydrolase genes from active tundra cellulolytic bacteria.
Pinnell LJ, Dunford E, Ronan P, Hausner M, Neufeld JD., Can J Microbiol 60(7), 2014
PMID: 24983351

RND transporters protect Corynebacterium glutamicum from antibiotics by assembling the outer membrane.
Yang L, Lu S, Belardinelli J, Huc-Claustre E, Jones V, Jackson M, Zgurskaya HI., Microbiologyopen 3(4), 2014
PMID: 24942069

Bifidobacterium faecale sp. nov., isolated from human faeces.
Choi JH, Lee KM, Lee MK, Cha CJ, Kim GB., Int J Syst Evol Microbiol 64(pt 9), 2014
PMID: 24944342

Genomic characterization and transcriptional studies of the starch-utilizing strain Bifidobacterium adolescentis 22L.
Duranti S, Turroni F, Lugli GA, Milani C, Viappiani A, Mangifesta M, Gioiosa L, Palanza P, van Sinderen D, Ventura M., Appl Environ Microbiol 80(19), 2014
PMID: 25063659

Thaxtomin A production and virulence are controlled by several bld gene global regulators in Streptomyces scabies.
Bignell DR, Francis IM, Fyans JK, Loria R., Mol Plant Microbe Interact 27(8), 2014
PMID: 24678834

Improved group-specific primers based on the full SILVA 16S rRNA gene reference database.
Pfeiffer S, Pastar M, Mitter B, Lippert K, Hackl E, Lojan P, Oswald A, Sessitsch A., Environ Microbiol 16(8), 2014
PMID: 25229098

Investigation of the evolutionary development of the genus Bifidobacterium by comparative genomics.
Lugli GA, Milani C, Turroni F, Duranti S, Ferrario C, Viappiani A, Mancabelli L, Mangifesta M, Taminiau B, Delcenserie V, van Sinderen D, Ventura M., Appl Environ Microbiol 80(20), 2014
PMID: 25107967

Impact of long-term N, P, K, and NPK fertilization on the composition and potential functions of the bacterial community in grassland soil.
Pan Y, Cassman N, de Hollander M, Mendes LW, Korevaar H, Geerts RH, van Veen JA, Kuramae EE., FEMS Microbiol Ecol 90(1), 2014
PMID: 25046442

Bifidobacterium bifidum as an example of a specialized human gut commensal.
Turroni F, Duranti S, Bottacini F, Guglielmetti S, Van Sinderen D, Ventura M., Front Microbiol 5(), 2014
PMID: 25191315

Diversity, ecology and intestinal function of bifidobacteria.
Bottacini F, Ventura M, van Sinderen D, O'Connell Motherway M., Microb Cell Fact 13 Suppl 1(), 2014
PMID: 25186128

Complete genome sequence of producer of the glycopeptide antibiotic Aculeximycin Kutzneria albida DSM 43870T, a representative of minor genus of Pseudonocardiaceae.
Rebets Y, Tokovenko B, Lushchyk I, Rückert C, Zaburannyi N, Bechthold A, Kalinowski J, Luzhetskyy A., BMC Genomics 15(), 2014
PMID: 25301375

Infant formula supplemented with low protein and high carbohydrate alters the intestinal microbiota in neonatal SD rats.
Fan W, Tang Y, Qu Y, Cao F, Huo G., BMC Microbiol 14(), 2014
PMID: 25403909

Bacteria as vitamin suppliers to their host: a gut microbiota perspective.
LeBlanc JG, Milani C, de Giori GS, Sesma F, van Sinderen D, Ventura M., Curr Opin Biotechnol 24(2), 2013
PMID: 22940212

Density parameter estimation for finding clusters of homologous proteins--tracing actinobacterial pathogenicity lifestyles.
Röttger R, Kalaghatgi P, Sun P, Soares Sde C, Azevedo V, Wittkop T, Baumbach J., Bioinformatics 29(2), 2013
PMID: 23142964

Transcriptional and functional characterization of genetic elements involved in galacto-oligosaccharide utilization by Bifidobacterium breve UCC2003.
O'Connell Motherway M, Kinsella M, Fitzgerald GF, van Sinderen D., Microb Biotechnol 6(1), 2013
PMID: 23199239

Microbial mechanisms mediating increased soil C storage under elevated atmospheric N deposition.
Eisenlord SD, Freedman Z, Zak DR, Xue K, He Z, Zhou J., Appl Environ Microbiol 79(4), 2013
PMID: 23220961

Phylogenetic distribution of potential cellulases in bacteria.
Berlemont R, Martiny AC., Appl Environ Microbiol 79(5), 2013
PMID: 23263967

Cell envelope of corynebacteria: structure and influence on pathogenicity.
Burkovski A., ISRN Microbiol 2013(), 2013
PMID: 23724339

Proteome turnover in bacteria: current status for Corynebacterium glutamicum and related bacteria.
Trötschel C, Albaum SP, Poetsch A., Microb Biotechnol 6(6), 2013
PMID: 23425033

A Microbial Metagenome (Leucobacter sp.) in Caenorhabditis Whole Genome Sequences.
Percudani R., Bioinform Biol Insights 7(), 2013
PMID: 23585714

Biological Efficacy of Streptomyces sp. Strain BN1 against the Cereal Head Blight Pathogen Fusarium graminearum.
Jung B, Park SY, Lee YW, Lee J., Plant Pathol J 29(1), 2013
PMID: 25288928

Diversity of bacteria in surface ice of Austre Lovénbreen glacier, Svalbard.
Zeng YX, Yan M, Yu Y, Li HR, He JF, Sun K, Zhang F., Arch Microbiol 195(5), 2013
PMID: 23474777

The multifaceted roles of antibiotics and antibiotic resistance in nature.
Sengupta S, Chattopadhyay MK, Grossart HP., Front Microbiol 4(), 2013
PMID: 23487476

Charting the cellular and extracellular proteome analysis of Brevibacterium linens DSM 20158 with unsequenced genome by mass spectrometry-driven sequence similarity searches.
Shabbiri K, Botting CH, Adnan A, Fuszard M., J Proteomics 83(), 2013
PMID: 23507220

Characterization of anaerobic consortia coupled lignin depolymerization with biomethane generation.
Wu YR, He J., Bioresour Technol 139(), 2013
PMID: 23639408

Bacillus subtilis SC02 supplementation causes alterations of the microbial diversity in grass carp water.
Zhang X, Fu L, Deng B, Liang Q, Zheng J, Sun J, Zhu H, Peng L, Wang Y, Wenying S, Li W., World J Microbiol Biotechnol 29(9), 2013
PMID: 23539150

Antibacterial activity of actinomycetes isolated from different soil samples of Sheopur (A city of central India).
Chaudhary HS, Yadav J, Shrivastava AR, Singh S, Singh AK, Gopalan N., J Adv Pharm Technol Res 4(2), 2013
PMID: 23833752

The actinobacterial transcription factor RbpA binds to the principal sigma subunit of RNA polymerase.
Tabib-Salazar A, Liu B, Doughty P, Lewis RA, Ghosh S, Parsy ML, Simpson PJ, O'Dwyer K, Matthews SJ, Paget MS., Nucleic Acids Res 41(11), 2013
PMID: 23605043

Phylogenetic analyses of phylum Actinobacteria based on whole genome sequences.
Verma M, Lal D, Kaur J, Saxena A, Kaur J, Anand S, Lal R., Res Microbiol 164(7), 2013
PMID: 23608518

The Nocardia cyriacigeorgica GUH-2 genome shows ongoing adaptation of an environmental Actinobacteria to a pathogen's lifestyle.
Zoropogui A, Pujic P, Normand P, Barbe V, Belli P, Graindorge A, Roche D, Vallenet D, Mangenot S, Boiron P, Rodriguez-Nava V, Ribun S, Richard Y, Cournoyer B, Blaha D., BMC Genomics 14(), 2013
PMID: 23622346

Changes in diversity, abundance, and structure of soil bacterial communities in Brazilian Savanna under different land use systems.
Rampelotto PH, de Siqueira Ferreira A, Barboza AD, Roesch LF., Microb Ecol 66(3), 2013
PMID: 23624541

Comparative genomics of Bifidobacterium animalis subsp. lactis reveals a strict monophyletic bifidobacterial taxon.
Milani C, Duranti S, Lugli GA, Bottacini F, Strati F, Arioli S, Foroni E, Turroni F, van Sinderen D, Ventura M., Appl Environ Microbiol 79(14), 2013
PMID: 23645200

Isolation and Molecular Identification of Streptomyces spp. with Antibacterial Activity from Northwest of Iran.
Maleki H, Dehnad A, Hanifian S, Khani S., Bioimpacts 3(3), 2013
PMID: 24163805

Transposon mutagenesis in Bifidobacterium breve: construction and characterization of a Tn5 transposon mutant library for Bifidobacterium breve UCC2003.
Ruiz L, Motherway MO, Lanigan N, van Sinderen D., PLoS One 8(5), 2013
PMID: 23737995

Mobilome and genetic modification of bifidobacteria.
Guglielmetti S, Mayo B, Álvarez-Martín P., Benef Microbes 4(2), 2013
PMID: 23271067

Assessing the fecal microbiota: an optimized ion torrent 16S rRNA gene-based analysis protocol.
Milani C, Hevia A, Foroni E, Duranti S, Turroni F, Lugli GA, Sanchez B, Martín R, Gueimonde M, van Sinderen D, Margolles A, Ventura M., PLoS One 8(7), 2013
PMID: 23869230

Dietary supplementation of Bifidobacterium longum strain AH1206 increases its cecal abundance and elevates intestinal interleukin-10 expression in the neonatal piglet.
Herfel TM, Jacobi SK, Lin X, Jouni ZE, Chichlowski M, Stahl CH, Odle J., Food Chem Toxicol 60(), 2013
PMID: 23872134

Metabolism of four α-glycosidic linkage-containing oligosaccharides by Bifidobacterium breve UCC2003.
O'Connell KJ, O'Connell Motherway M, O'Callaghan J, Fitzgerald GF, Ross RP, Ventura M, Stanton C, van Sinderen D., Appl Environ Microbiol 79(20), 2013
PMID: 23913435

Bacillus subtilis SC02 supplementation causes alterations of the microbial diversity in grass carp water
Zhang X, Fu L, Deng B, Liang Q, Zheng J, Sun J, Zhu H, Peng L, Wang Y, Wenying S, Li W., World J Microbiol Biotechnol 29(9), 2013
PMID: IND500684735

WhiB7, an Fe-S-dependent transcription factor that activates species-specific repertoires of drug resistance determinants in actinobacteria.
Ramón-García S, Ng C, Jensen PR, Dosanjh M, Burian J, Morris RP, Folcher M, Eltis LD, Grzesiek S, Nguyen L, Thompson CJ., J Biol Chem 288(48), 2013
PMID: 24126912

Identification of TTA codon containing genes in Frankia and exploration of the role of tRNA in regulating these genes.
Sen A, Thakur S, Bothra AK, Sur S, Tisa LS., Arch Microbiol 194(1), 2012
PMID: 21773800

Phylogenetic perspectives of nitrogen-fixing actinobacteria.
Gtari M, Ghodhbane-Gtari F, Nouioui I, Beauchemin N, Tisa LS., Arch Microbiol 194(1), 2012
PMID: 21779790

The influence of the discharging sewage on microbial diversity in sludge from Dongting Lake.
Yang Y, Wang X, Shi J, Li J., World J Microbiol Biotechnol 28(2), 2012
PMID: 22806836

Prokaryotic systematics in the genomics era.
Zhi XY, Zhao W, Li WJ, Zhao GP., Antonie Van Leeuwenhoek 101(1), 2012
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Signals and regulators that govern Streptomyces development.
McCormick JR, Flärdh K., FEMS Microbiol Rev 36(1), 2012
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Streptomyces as symbionts: an emerging and widespread theme?
Seipke RF, Kaltenpoth M, Hutchings MI., FEMS Microbiol Rev 36(4), 2012
PMID: 22091965

Pyrosequence analysis of unamplified and whole genome amplified DNA from hydrocarbon-contaminated groundwater.
Abbai NS, Govender A, Shaik R, Pillay B., Mol Biotechnol 50(1), 2012
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The early settlers: intestinal microbiology in early life.
Scholtens PA, Oozeer R, Martin R, Amor KB, Knol J., Annu Rev Food Sci Technol 3(), 2012
PMID: 22224552

Gene fragmentation in bacterial draft genomes: extent, consequences and mitigation.
Klassen JL, Currie CR., BMC Genomics 13(), 2012
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Evolutionary link between the mycobacterial plasmid pAL5000 replication protein RepB and the extracytoplasmic function family of σ factors.
Basu A, Chatterjee S, Chatterjee S, Das Gupta SK., J Bacteriol 194(6), 2012
PMID: 22247504

Identification and characterization of a spore-like morphotype in chronically starved Mycobacterium avium subsp. paratuberculosis cultures.
Lamont EA, Bannantine JP, Armién A, Ariyakumar DS, Sreevatsan S., PLoS One 7(1), 2012
PMID: 22292005

Investigating conservation of the albaflavenone biosynthetic pathway and CYP170 bifunctionality in streptomycetes.
Moody SC, Zhao B, Lei L, Nelson DR, Mullins JG, Waterman MR, Kelly SL, Lamb DC., FEBS J 279(9), 2012
PMID: 22151149

Safety assessment of Bifidobacterium longum JDM301 based on complete genome sequences.
Wei YX, Zhang ZY, Liu C, Malakar PK, Guo XK., World J Gastroenterol 18(5), 2012
PMID: 22346255

The influence of the discharging sewage on microbial diversity in sludge from Dongting Lake
Yang Y, Wang X, Shi J, Li J., World J Microbiol Biotechnol 28(2), 2012
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Cytoskeletal proteins of actinobacteria.
Letek M, Fiuza M, Villadangos AF, Mateos LM, Gil JA., Int J Cell Biol 2012(), 2012
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Composition, diversity, and origin of the bacterial community in grass carp intestine.
Wu S, Wang G, Angert ER, Wang W, Li W, Zou H., PLoS One 7(2), 2012
PMID: 22363439

Probiogenomics as a tool to obtain genetic insights into adaptation of probiotic bacteria to the human gut.
Ventura M, Turroni F, van Sinderen D., Bioeng Bugs 3(2), 2012
PMID: 22095053

Biodiscovery from rare actinomycetes: an eco-taxonomical perspective.
Kurtböke DI., Appl Microbiol Biotechnol 93(5), 2012
PMID: 22297430

Phylogenetic framework and molecular signatures for the main clades of the phylum Actinobacteria.
Gao B, Gupta RS., Microbiol Mol Biol Rev 76(1), 2012
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Dispersal limitation and the assembly of soil Actinobacteria communities in a long-term chronosequence.
Eisenlord SD, Zak DR, Upchurch RA., Ecol Evol 2(3), 2012
PMID: 22822433

Pangenomic study of Corynebacterium diphtheriae that provides insights into the genomic diversity of pathogenic isolates from cases of classical diphtheria, endocarditis, and pneumonia.
Trost E, Blom J, Soares Sde C, Huang IH, Al-Dilaimi A, Schröder J, Jaenicke S, Dorella FA, Rocha FS, Miyoshi A, Azevedo V, Schneider MP, Silva A, Camello TC, Sabbadini PS, Santos CS, Santos LS, Hirata R, Mattos-Guaraldi AL, Efstratiou A, Schmitt MP, Ton-That H, Tauch A., J Bacteriol 194(12), 2012
PMID: 22505676

The role of Corynebacterium glutamicum spiA gene in whcA-mediated oxidative stress gene regulation.
Park JS, Lee JY, Kim HJ, Kim ES, Kim P, Kim Y, Lee HS., FEMS Microbiol Lett 331(1), 2012
PMID: 22443283

Complete genome sequence, lifestyle, and multi-drug resistance of the human pathogen Corynebacterium resistens DSM 45100 isolated from blood samples of a leukemia patient.
Schröder J, Maus I, Meyer K, Wördemann S, Blom J, Jaenicke S, Schneider J, Trost E, Tauch A., BMC Genomics 13(), 2012
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Analysis of predicted carbohydrate transport systems encoded by Bifidobacterium bifidum PRL2010.
Turroni F, Strati F, Foroni E, Serafini F, Duranti S, van Sinderen D, Ventura M., Appl Environ Microbiol 78(14), 2012
PMID: 22562993

Characterization of soil bacterial assemblies in Brazilian savanna-like vegetation reveals acidobacteria dominance.
Araujo JF, de Castro AP, Costa MM, Togawa RC, Júnior GJ, Quirino BF, Bustamante MM, Williamson L, Handelsman J, Krüger RH., Microb Ecol 64(3), 2012
PMID: 22570118

Diversity of bifidobacteria within the infant gut microbiota.
Turroni F, Peano C, Pass DA, Foroni E, Severgnini M, Claesson MJ, Kerr C, Hourihane J, Murray D, Fuligni F, Gueimonde M, Margolles A, De Bellis G, O'Toole PW, van Sinderen D, Marchesi JR, Ventura M., PLoS One 7(5), 2012
PMID: 22606315

Acid azo dye remediation in anoxic-aerobic-anoxic microenvironment under periodic discontinuous batch operation: bio-electro kinetics and microbial inventory.
Venkata Mohan S, Suresh Babu P, Naresh K, Velvizhi G, Madamwar D., Bioresour Technol 119(), 2012
PMID: 22750504

An efficient and reproducible method for transformation of genetically recalcitrant bifidobacteria.
Serafini F, Turroni F, Guglielmetti S, Gioiosa L, Foroni E, Sanghez V, Bartolomucci A, Motherway MO, Palanza P, van Sinderen D, Ventura M., FEMS Microbiol Lett 333(2), 2012
PMID: 22640171

Characterization of a biogas-producing microbial community by short-read next generation DNA sequencing.
Wirth R, Kovács E, Maróti G, Bagi Z, Rákhely G, Kovács KL., Biotechnol Biofuels 5(), 2012
PMID: 22673110

Three pathway-specific regulators control streptolydigin biosynthesis in Streptomyces lydicus.
Gómez C, Olano C, Méndez C, Salas JA., Microbiology 158(pt 10), 2012
PMID: 22820841

Bifidobacterium asteroides PRL2011 genome analysis reveals clues for colonization of the insect gut.
Bottacini F, Milani C, Turroni F, Sánchez B, Foroni E, Duranti S, Serafini F, Viappiani A, Strati F, Ferrarini A, Delledonne M, Henrissat B, Coutinho P, Fitzgerald GF, Margolles A, van Sinderen D, Ventura M., PLoS One 7(9), 2012
PMID: 23028506

Characterization of cytotoxic compound from marine sediment derived actinomycete Streptomyces avidinii strain SU4.
Sudha S, Masilamani SM., Asian Pac J Trop Biomed 2(10), 2012
PMID: 23569845

The pupylation pathway and its role in mycobacteria.
Barandun J, Delley CL, Weber-Ban E., BMC Biol 10(), 2012
PMID: 23198822

Methods of combinatorial optimization to reveal factors affecting gene length.
Bolshoy A, Tatarinova T., Bioinform Biol Insights 6(), 2012
PMID: 23300345

Engineering of nitrogen metabolism and its regulation in Corynebacterium glutamicum: influence on amino acid pools and production.
Rehm N, Burkovski A., Appl Microbiol Biotechnol 89(2), 2011
PMID: 20922371

Metabolism of a plant derived galactose-containing polysaccharide by Bifidobacterium breve UCC2003.
O'Connell Motherway M, Fitzgerald GF, van Sinderen D., Microb Biotechnol 4(3), 2011
PMID: 21375716

Prolonged environmental persistence requires efficient disinfection procedures to control Devriesea agamarum-associated disease in lizards.
Hellebuyck T, Pasmans F, Blooi M, Haesebrouck F, Martel A., Lett Appl Microbiol 52(1), 2011
PMID: 21091522

Candidate gene and genome-wide association studies of Mycobacterium avium subsp. paratuberculosis infection in cattle and sheep: a review.
Purdie AC, Plain KM, Begg DJ, de Silva K, Whittington RJ., Comp Immunol Microbiol Infect Dis 34(3), 2011
PMID: 21216466

A combined approach for comparative exoproteome analysis of Corynebacterium pseudotuberculosis.
Pacheco LG, Slade SE, Seyffert N, Santos AR, Castro TL, Silva WM, Santos AV, Santos SG, Farias LM, Carvalho MA, Pimenta AM, Meyer R, Silva A, Scrivens JH, Oliveira SC, Miyoshi A, Dowson CG, Azevedo V., BMC Microbiol 11(1), 2011
PMID: 21241507

Rapid changes in gene expression: DNA determinants of promoter regulation by the concentration of the transcription initiating NTP in Bacillus subtilis.
Sojka L, Kouba T, Barvík I, Sanderová H, Maderová Z, Jonák J, Krásny L., Nucleic Acids Res 39(11), 2011
PMID: 21303765

Bisubstrate specificity in histidine/tryptophan biosynthesis isomerase from Mycobacterium tuberculosis by active site metamorphosis.
Due AV, Kuper J, Geerlof A, von Kries JP, Wilmanns M., Proc Natl Acad Sci U S A 108(9), 2011
PMID: 21321225

Pyrosequencing-based assessment of bacterial community structure along different management types in German forest and grassland soils.
Nacke H, Thürmer A, Wollherr A, Will C, Hodac L, Herold N, Schöning I, Schrumpf M, Daniel R., PLoS One 6(2), 2011
PMID: 21359220

Effect of diet and gut dynamics on the establishment and persistence of Escherichia coli.
O'Brien CL, Gordon DM., Microbiology 157(pt 5), 2011
PMID: 21330431

The actinobacteria-specific gene wblA controls major developmental transitions in Streptomyces coelicolor A3(2).
Fowler-Goldsworthy K, Gust B, Mouz S, Chandra G, Findlay KC, Chater KF., Microbiology 157(pt 5), 2011
PMID: 21330440

Ovine ruminal microbes are capable of biotransforming hexahydro-1,3,5-trinitro-1,3,5-triazine (RDX).
Eaton HL, De Lorme M, Chaney RL, Craig AM., Microb Ecol 62(2), 2011
PMID: 21340737

A guide to the natural history of freshwater lake bacteria.
Newton RJ, Jones SE, Eiler A, McMahon KD, Bertilsson S., Microbiol Mol Biol Rev 75(1), 2011
PMID: 21372319

Insights into physiological and genetic mupirocin susceptibility in bifidobacteria.
Serafini F, Bottacini F, Viappiani A, Baruffini E, Turroni F, Foroni E, Lodi T, van Sinderen D, Ventura M., Appl Environ Microbiol 77(9), 2011
PMID: 21421794

The Jackprot Simulation Couples Mutation Rate with Natural Selection to Illustrate How Protein Evolution Is Not Random.
Paz-Y-Miño C G, Espinosa A, Bai CY., Evolution (N Y) 4(3), 2011
PMID: 26973733

Core gene set as the basis of multilocus sequence analysis of the subclass Actinobacteridae.
Adékambi T, Butler RW, Hanrahan F, Delcher AL, Drancourt M, Shinnick TM., PLoS One 6(3), 2011
PMID: 21483493

The extracellular proteome of Bifidobacterium animalis subsp. lactis BB-12 reveals proteins with putative roles in probiotic effects.
Gilad O, Svensson B, Viborg AH, Stuer-Lauridsen B, Jacobsen S., Proteomics 11(12), 2011
PMID: 21598393

Proteomics of corynebacteria: From biotechnology workhorses to pathogens.
Poetsch A, Haussmann U, Burkovski A., Proteomics 11(15), 2011
PMID: 21674800

Comparative genome-scale metabolic modeling of actinomycetes: the topology of essential core metabolism.
Alam MT, Medema MH, Takano E, Breitling R., FEBS Lett 585(14), 2011
PMID: 21712033

Phylogeny, phenotypic and nutritional characteristics of estuarine soil actinomycetes having broad-spectrum antimicrobial activity derived from an ecologically guided bioprospecting programme
Mitra A, Pramanik A, Santra SC, Sen PK, Mukherjee J., World J Microbiol Biotechnol 27(7), 2011
PMID: IND44745687

Granaticins and their biosynthetic gene cluster from Streptomyces vietnamensis: evidence of horizontal gene transfer.
Deng MR, Guo J, Li X, Zhu CH, Zhu HH., Antonie Van Leeuwenhoek 100(4), 2011
PMID: 21732034

Leaderless genes in bacteria: clue to the evolution of translation initiation mechanisms in prokaryotes.
Zheng X, Hu GQ, She ZS, Zhu H., BMC Genomics 12(), 2011
PMID: 21749696

Dogs leaving the ICU carry a very large multi-drug resistant enterococcal population with capacity for biofilm formation and horizontal gene transfer.
Ghosh A, Dowd SE, Zurek L., PLoS One 6(7), 2011
PMID: 21811613

Biosynthetic gene cluster for the cladoniamides, bis-indoles with a rearranged scaffold.
Ryan KS., PLoS One 6(8), 2011
PMID: 21876764

Ability of Bifidobacterium breve to grow on different types of milk: exploring the metabolism of milk through genome analysis.
Turroni F, Foroni E, Serafini F, Viappiani A, Montanini B, Bottacini F, Ferrarini A, Bacchini PL, Rota C, Delledonne M, Ottonello S, van Sinderen D, Ventura M., Appl Environ Microbiol 77(20), 2011
PMID: 21856831

Mycobacterium tuberculosis Rv0899 defines a family of membrane proteins widespread in nitrogen-fixing bacteria.
Marassi FM., Proteins 79(10), 2011
PMID: 21905117

Genetic analysis and morphological identification of pilus-like structures in members of the genus Bifidobacterium.
Foroni E, Serafini F, Amidani D, Turroni F, He F, Bottacini F, O'Connell Motherway M, Viappiani A, Zhang Z, Rivetti C, van Sinderen D, Ventura M., Microb Cell Fact 10 Suppl 1(), 2011
PMID: 21995649

Mycobacterium chelonae-abscessus complex associated with sinopulmonary disease, Northeastern USA.
Simmon KE, Brown-Elliott BA, Ridge PG, Durtschi JD, Mann LB, Slechta ES, Steigerwalt AG, Moser BD, Whitney AM, Brown JM, Voelkerding KV, McGowan KL, Reilly AF, Kirn TJ, Butler WR, Edelstein PH, Wallace RJ, Petti CA., Emerg Infect Dis 17(9), 2011
PMID: 21888796

Duplication and evolution of devA-like genes in Streptomyces has resulted in distinct developmental roles.
Clark LC, Hoskisson PA., PLoS One 6(10), 2011
PMID: 21998634

Global genome transcription profiling of Bifidobacterium bifidum PRL2010 under in vitro conditions and identification of reference genes for quantitative real-time PCR.
Turroni F, Foroni E, Montanini B, Viappiani A, Strati F, Duranti S, Ferrarini A, Delledonne M, van Sinderen D, Ventura M., Appl Environ Microbiol 77(24), 2011
PMID: 22003014

Complete genome sequence of Bifidobacterium animalis subsp. lactis BLC1.
Bottacini F, Dal Bello F, Turroni F, Milani C, Duranti S, Foroni E, Viappiani A, Strati F, Mora D, van Sinderen D, Ventura M., J Bacteriol 193(22), 2011
PMID: 22038957

Genome sequence of Brachybacterium squillarum M-6-3(T), isolated from salt-fermented seafood.
Park SK, Roh SW, Whon TW, Bae JW., J Bacteriol 193(22), 2011
PMID: 22038973

Complete genome sequence of Corynebacterium variabile DSM 44702 isolated from the surface of smear-ripened cheeses and insights into cheese ripening and flavor generation.
Schröder J, Maus I, Trost E, Tauch A., BMC Genomics 12(), 2011
PMID: 22053731

Cloning of a new xylanase gene from Streptomyces sp. TN119 using a modified thermal asymmetric interlaced-PCR specific for GC-rich genes and biochemical characterization.
Zhou J, Huang H, Meng K, Shi P, Wang Y, Luo H, Yang P, Bai Y, Yao B., Appl Biochem Biotechnol 160(5), 2010
PMID: 19412576

Ribose utilization by the human commensal Bifidobacterium breve UCC2003.
Pokusaeva K, Neves AR, Zomer A, O'Connell-Motherway M, MacSharry J, Curley P, Fitzgerald GF, van Sinderen D., Microb Biotechnol 3(3), 2010
PMID: 21255330

Genome sequence of the Fleming strain of Micrococcus luteus, a simple free-living actinobacterium.
Young M, Artsatbanov V, Beller HR, Chandra G, Chater KF, Dover LG, Goh EB, Kahan T, Kaprelyants AS, Kyrpides N, Lapidus A, Lowry SR, Lykidis A, Mahillon J, Markowitz V, Mavromatis K, Mukamolova GV, Oren A, Rokem JS, Smith MC, Young DI, Greenblatt CL., J Bacteriol 192(3), 2010
PMID: 19948807

Genome-based phylogenetic analysis of Streptomyces and its relatives.
Alam MT, Merlo ME, Takano E, Breitling R., Mol Phylogenet Evol 54(3), 2010
PMID: 19948233

The complex extracellular biology of Streptomyces.
Chater KF, Biró S, Lee KJ, Palmer T, Schrempf H., FEMS Microbiol Rev 34(2), 2010
PMID: 20088961

Bifidobacterium stercoris sp. nov., isolated from human faeces.
Kim MS, Roh SW, Bae JW., Int J Syst Evol Microbiol 60(pt 12), 2010
PMID: 20081020

Complete genome sequence and lifestyle of black-pigmented Corynebacterium aurimucosum ATCC 700975 (formerly C. nigricans CN-1) isolated from a vaginal swab of a woman with spontaneous abortion.
Trost E, Götker S, Schneider J, Schneiker-Bekel S, Szczepanowski R, Tilker A, Viehoever P, Arnold W, Bekel T, Blom J, Gartemann KH, Linke B, Goesmann A, Pühler A, Shukla SK, Tauch A., BMC Genomics 11(), 2010
PMID: 20137072

Intertwinement of stress response regulons in Bifidobacterium breve UCC2003.
Zomer A, van Sinderen D., Gut Microbes 1(2), 2010
PMID: 21326917

Call of the wild: antibiotic resistance genes in natural environments.
Allen HK, Donato J, Wang HH, Cloud-Hansen KA, Davies J, Handelsman J., Nat Rev Microbiol 8(4), 2010
PMID: 20190823

Analyses of bifidobacterial prophage-like sequences.
Ventura M, Turroni F, Foroni E, Duranti S, Giubellini V, Bottacini F, van Sinderen D., Antonie Van Leeuwenhoek 98(1), 2010
PMID: 20229290

Characterization of the serpin-encoding gene of Bifidobacterium breve 210B.
Turroni F, Foroni E, O'Connell Motherway M, Bottacini F, Giubellini V, Zomer A, Ferrarini A, Delledonne M, Zhang Z, van Sinderen D, Ventura M., Appl Environ Microbiol 76(10), 2010
PMID: 20348296

Stress-induced synthesis of phosphatidylinositol 3-phosphate in mycobacteria.
Morita YS, Yamaryo-Botte Y, Miyanagi K, Callaghan JM, Patterson JH, Crellin PK, Coppel RL, Billman-Jacobe H, Kinoshita T, McConville MJ., J Biol Chem 285(22), 2010
PMID: 20364020

Transcriptional regulation of gene expression in Corynebacterium glutamicum: the role of global, master and local regulators in the modular and hierarchical gene regulatory network.
Schröder J, Tauch A., FEMS Microbiol Rev 34(5), 2010
PMID: 20491930

Nursing our microbiota: molecular linkages between bifidobacteria and milk oligosaccharides.
Sela DA, Mills DA., Trends Microbiol 18(7), 2010
PMID: 20409714

A framework for classification of prokaryotic protein kinases.
Tyagi N, Anamika K, Srinivasan N., PLoS One 5(5), 2010
PMID: 20520783

The phosphatomes of the multicellular myxobacteria Myxococcus xanthus and Sorangium cellulosum in comparison with other prokaryotic genomes.
Treuner-Lange A., PLoS One 5(6), 2010
PMID: 20567509

A guide to successful bioprospecting: informed by actinobacterial systematics.
Goodfellow M, Fiedler HP., Antonie Van Leeuwenhoek 98(2), 2010
PMID: 20582471

Comparative genomics of the genus Bifidobacterium.
Bottacini F, Medini D, Pavesi A, Turroni F, Foroni E, Riley D, Giubellini V, Tettelin H, van Sinderen D, Ventura M., Microbiology 156(pt 11), 2010
PMID: 20634238

Performance of a sulfidogenic bioreactor and bacterial community shifts under different alkalinity levels.
Zhao YG, Li XW, Wang JC, Bai J, Tian WJ., Bioresour Technol 101(23), 2010
PMID: 20688512

Actinobacteria: the good, the bad, and the ugly.
Miao V, Davies J., Antonie Van Leeuwenhoek 98(2), 2010
PMID: 20390355

Genomic insights into bifidobacteria.
Lee JH, O'Sullivan DJ., Microbiol Mol Biol Rev 74(3), 2010
PMID: 20805404

Origins and evolution of antibiotic resistance.
Davies J, Davies D., Microbiol Mol Biol Rev 74(3), 2010
PMID: 20805405

Role of porins in iron uptake by Mycobacterium smegmatis.
Jones CM, Niederweis M., J Bacteriol 192(24), 2010
PMID: 20952578

Genome analysis of Bifidobacterium bifidum PRL2010 reveals metabolic pathways for host-derived glycan foraging.
Turroni F, Bottacini F, Foroni E, Mulder I, Kim JH, Zomer A, Sánchez B, Bidossi A, Ferrarini A, Giubellini V, Delledonne M, Henrissat B, Coutinho P, Oggioni M, Fitzgerald GF, Mills D, Margolles A, Kelly D, van Sinderen D, Ventura M., Proc Natl Acad Sci U S A 107(45), 2010
PMID: 20974960

Rhomboid homologs in mycobacteria: insights from phylogeny and genomic analysis.
Kateete DP, Okee M, Katabazi FA, Okeng A, Asiimwe J, Boom HW, Eisenach KD, Joloba ML., BMC Microbiol 10(), 2010
PMID: 21029479

Genome sequence of Kitasatospora setae NBRC 14216T: an evolutionary snapshot of the family Streptomycetaceae.
Ichikawa N, Oguchi A, Ikeda H, Ishikawa J, Kitani S, Watanabe Y, Nakamura S, Katano Y, Kishi E, Sasagawa M, Ankai A, Fukui S, Hashimoto Y, Kamata S, Otoguro M, Tanikawa S, Nihira T, Horinouchi S, Ohnishi Y, Hayakawa M, Kuzuyama T, Arisawa A, Nomoto F, Miura H, Takahashi Y, Fujita N., DNA Res 17(6), 2010
PMID: 21059706

The complete genome sequence of Corynebacterium pseudotuberculosis FRC41 isolated from a 12-year-old girl with necrotizing lymphadenitis reveals insights into gene-regulatory networks contributing to virulence.
Trost E, Ott L, Schneider J, Schröder J, Jaenicke S, Goesmann A, Husemann P, Stoye J, Dorella FA, Rocha FS, Soares Sde C, D'Afonseca V, Miyoshi A, Ruiz J, Silva A, Azevedo V, Burkovski A, Guiso N, Join-Lambert OF, Kayal S, Tauch A., BMC Genomics 11(), 2010
PMID: 21192786

Genome-scale analyses of health-promoting bacteria: probiogenomics.
Ventura M, O'Flaherty S, Claesson MJ, Turroni F, Klaenhammer TR, van Sinderen D, O'Toole PW., Nat Rev Microbiol 7(1), 2009
PMID: 19029955

Overcoming the restriction barrier to plasmid transformation and targeted mutagenesis in Bifidobacterium breve UCC2003.
O'Connell Motherway M, O'Driscoll J, Fitzgerald GF, Van Sinderen D., Microb Biotechnol 2(3), 2009
PMID: 21261927

A Bifidobacterium mixed-species microarray for high resolution discrimination between intestinal bifidobacteria.
Boesten RJ, Schuren FH, de Vos WM., J Microbiol Methods 76(3), 2009
PMID: 19141304

Characterization of two novel alpha-glucosidases from Bifidobacterium breve UCC2003.
Pokusaeva K, O'Connell-Motherway M, Zomer A, Fitzgerald GF, van Sinderen D., Appl Environ Microbiol 75(4), 2009
PMID: 19114534

Physiology of mycobacteria.
Cook GM, Berney M, Gebhard S, Heinemann M, Cox RA, Danilchanka O, Niederweis M., Adv Microb Physiol 55(), 2009
PMID: 19573696

Probiotic and gut lactobacilli and bifidobacteria: molecular approaches to study diversity and activity.
Kleerebezem M, Vaughan EE., Annu Rev Microbiol 63(), 2009
PMID: 19575569

Conserved inserts in the Hsp60 (GroEL) and Hsp70 (DnaK) proteins are essential for cellular growth.
Singh B, Gupta RS., Mol Genet Genomics 281(4), 2009
PMID: 19127371

Exploring the diversity of the bifidobacterial population in the human intestinal tract.
Turroni F, Foroni E, Pizzetti P, Giubellini V, Ribbera A, Merusi P, Cagnasso P, Bizzarri B, de'Angelis GL, Shanahan F, van Sinderen D, Ventura M., Appl Environ Microbiol 75(6), 2009
PMID: 19168652

Defining mycobacteria: Shared and specific genome features for different lifestyles.
Vissa VD, Sakamuri RM, Li W, Brennan PJ., Indian J Microbiol 49(1), 2009
PMID: 23100749

Actinorhodopsin genes discovered in diverse freshwater habitats and among cultivated freshwater Actinobacteria.
Sharma AK, Sommerfeld K, Bullerjahn GS, Matteson AR, Wilhelm SW, Jezbera J, Brandt U, Doolittle WF, Hahn MW., ISME J 3(6), 2009
PMID: 19242530

Mixed-species genomic microarray analysis of fecal samples reveals differential transcriptional responses of bifidobacteria in breast- and formula-fed infants.
Klaassens ES, Boesten RJ, Haarman M, Knol J, Schuren FH, Vaughan EE, de Vos WM., Appl Environ Microbiol 75(9), 2009
PMID: 19286790

Microbiomic analysis of the bifidobacterial population in the human distal gut.
Turroni F, Marchesi JR, Foroni E, Gueimonde M, Shanahan F, Margolles A, van Sinderen D, Ventura M., ISME J 3(6), 2009
PMID: 19295640

Comparison of the complete genome sequences of Bifidobacterium animalis subsp. lactis DSM 10140 and Bl-04.
Barrangou R, Briczinski EP, Traeger LL, Loquasto JR, Richards M, Horvath P, Coûté-Monvoisin AC, Leyer G, Rendulic S, Steele JL, Broadbent JR, Oberg T, Dudley EG, Schuster S, Romero DA, Roberts RF., J Bacteriol 191(13), 2009
PMID: 19376856

Structural and phylogenetic analysis of a conserved actinobacteria-specific protein (ASP1; SCO1997) from Streptomyces coelicolor.
Gao B, Sugiman-Marangos S, Junop MS, Gupta RS., BMC Struct Biol 9(), 2009
PMID: 19515238

Antitumor compounds from marine actinomycetes.
Olano C, Méndez C, Salas JA., Mar Drugs 7(2), 2009
PMID: 19597582

Structure and function of a complex between chorismate mutase and DAHP synthase: efficiency boost for the junior partner.
Sasso S, Okvist M, Roderer K, Gamper M, Codoni G, Krengel U, Kast P., EMBO J 28(14), 2009
PMID: 19556970

TTA Lynx: a web-based service for analysis of actinomycete genes containing rare TTA codon.
Zaburannyy N, Ostash B, Fedorenko V., Bioinformatics 25(18), 2009
PMID: 19574286

Corynebacterium maris sp. nov., a marine bacterium isolated from the mucus of the coral Fungia granulosa.
Ben-Dov E, Ben Yosef DZ, Pavlov V, Kushmaro A., Int J Syst Evol Microbiol 59(pt 10), 2009
PMID: 19622641

Mycobacterium tuberculosis modulates its cell surface via an oligopeptide permease (Opp) transport system.
Flores-Valdez MA, Morris RP, Laval F, Daffé M, Schoolnik GK., FASEB J 23(12), 2009
PMID: 19671666

Comparative analyses of actinobacterial genomic fragments from Lake Kinneret.
Philosof A, Sabehi G, Béjà O., Environ Microbiol 11(12), 2009
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One of the two genes encoding nucleoid-associated HU proteins in Streptomyces coelicolor is developmentally regulated and specifically involved in spore maturation.
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A phylogenomic approach to bacterial phylogeny: evidence of a core of genes sharing a common history.
Daubin V, Gouy M, Perriere G., Genome Res. 12(7), 2002
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G+C3 structuring along the genome: a common feature in prokaryotes.
Daubin V, Perriere G., Mol. Biol. Evol. 20(4), 2003
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Ratoon stunting disease of sugarcane: isolation of the causal bacterium.
Davis MJ, Gillaspie AG Jr, Harris RW, Lawson RH., Science 210(4476), 1980
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Chromosome evolution in the Thermotogales: large-scale inversions and strain diversification of CRISPR sequences.
DeBoy RT, Mongodin EF, Emerson JB, Nelson KE., J. Bacteriol. 188(7), 2006
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Transport and metabolism of glucose and arabinose in Bifidobacterium breve.
Degnan BA, Macfarlane GT., Arch. Microbiol. 160(2), 1993
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Comparative immune response to PE and PE_PGRS antigens of Mycobacterium tuberculosis.
Delogu G, Brennan MJ., Infect. Immun. 69(9), 2001
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Replication and control of circular bacterial plasmids.
del Solar G, Giraldo R, Ruiz-Echevarria MJ, Espinosa M, Diaz-Orejas R., Microbiol. Mol. Biol. Rev. 62(2), 1998
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Structural analysis of the 6 kb cryptic plasmid pFAJ2600 from Rhodococcus erythropolis NI86/21 and construction of Escherichia coli-Rhodococcus shuttle vectors.
De Mot R, Nagy I, De Schrijver A, Pattanapipitpaisal P, Schoofs G, Vanderleyden J., Microbiology (Reading, Engl.) 143 ( Pt 10)(), 1997
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A multigene approach to phylogenetic analysis using the genus Mycobacterium as a model.
Devulder G, Perouse de Montclos M, Flandrois JP., Int. J. Syst. Evol. Microbiol. 55(Pt 1), 2005
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Whole genome plasticity in pathogenic bacteria.
Dobrindt U, Hacker J., Curr. Opin. Microbiol. 4(5), 2001
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AUTHOR UNKNOWN, 1973

Characterization of the plasmid encoded virulence region pat-1 of phytopathogenic Clavibacter michiganensis subsp. michiganensis.
Dreier J, Meletzus D, Eichenlaub R., Mol. Plant Microbe Interact. 10(2), 1997
PMID: 9057325

Identification of the gene for beta-fructofuranosidase of Bifidobacterium lactis DSM10140(T) and characterization of the enzyme expressed in Escherichia coli.
Ehrmann MA, Korakli M, Vogel RF., Curr. Microbiol. 46(6), 2003
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Evidence for symmetric chromosomal inversions around the replication origin in bacteria.
Eisen JA, Heidelberg JF, White O, Salzberg SL., Genome Biol. 1(6), 2000
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Building filaments in the air: aerial morphogenesis in bacteria and fungi.
Elliot MA, Talbot NJ., Curr. Opin. Microbiol. 7(6), 2004
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The molecular phylogeny and systematics of the actinomycetes.
Embley TM, Stackebrandt E., Annu. Rev. Microbiol. 48(), 1994
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Leifsonia poae gen. nov., sp. nov., isolated from nematode galls on Poa annua, and reclassification of 'Corynebacterium aquaticum' Leifson 1962 as Leifsonia aquatica (ex Leifson 1962) gen. nov., nom. rev., comb. nov. and Clavibacter xyli Davis et al. 1984 with two subspecies as Leifsonia xyli (Davis et al. 1984) gen. nov., comb. nov.
Evtushenko LI, Dorofeeva LV, Subbotin SA, Cole JR, Tiedje JM., Int. J. Syst. Evol. Microbiol. 50 Pt 1(), 2000
PMID: 10826825

Epidemiology of infection by nontuberculous mycobacteria.
Falkinham JO 3rd., Clin. Microbiol. Rev. 9(2), 1996
PMID: 8964035

IS6110-mediated deletions of wild-type chromosomes of Mycobacterium tuberculosis.
Fang Z, Doig C, Kenna DT, Smittipat N, Palittapongarnpim P, Watt B, Forbes KJ., J. Bacteriol. 181(3), 1999
PMID: 9922268

Corynebacterium ciconiae sp. nov., isolated from the trachea of black storks (Ciconia nigra).
Fernandez-Garayzabal JF, Vela AI, Egido R, Hutson RA, Lanzarot MP, Fernandez-Garcia M, Collins MD., Int. J. Syst. Evol. Microbiol. 54(Pt 6), 2004
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Global phylogeny of Mycobacterium tuberculosis based on single nucleotide polymorphism (SNP) analysis: insights into tuberculosis evolution, phylogenetic accuracy of other DNA fingerprinting systems, and recommendations for a minimal standard SNP set.
Filliol I, Motiwala AS, Cavatore M, Qi W, Hazbon MH, Bobadilla del Valle M, Fyfe J, Garcia-Garcia L, Rastogi N, Sola C, Zozio T, Guerrero MI, Leon CI, Crabtree J, Angiuoli S, Eisenach KD, Durmaz R, Joloba ML, Rendon A, Sifuentes-Osornio J, Ponce de Leon A, Cave MD, Fleischmann R, Whittam TS, Alland D., J. Bacteriol. 188(2), 2006
PMID: 16385065

Whole genome-based phylogenetic analysis of free-living microorganisms.
Fitz-Gibbon ST, House CH., Nucleic Acids Res. 27(21), 1999
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Whole-genome comparison of Mycobacterium tuberculosis clinical and laboratory strains.
Fleischmann RD, Alland D, Eisen JA, Carpenter L, White O, Peterson J, DeBoy R, Dodson R, Gwinn M, Haft D, Hickey E, Kolonay JF, Nelson WC, Umayam LA, Ermolaeva M, Salzberg SL, Delcher A, Utterback T, Weidman J, Khouri H, Gill J, Mikula A, Bishai W, Jacobs WR Jr, Venter JC, Fraser CM., J. Bacteriol. 184(19), 2002
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Molecular organization of exopolysaccharide (EPS) encoding genes on the lactococcal bacteriophage adsorption blocking plasmid, pCI658.
Forde A, Fitzgerald GF., Plasmid 49(2), 2003
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How close is close: 16S rRNA sequence identity may not be sufficient to guarantee species identity.
Fox GE, Wisotzkey JD, Jurtshuk P Jr, Fox GE., Int. J. Syst. Bacteriol. 42(1), 1992
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Asymmetric substitution patterns: a review of possible underlying mutational or selective mechanisms.
Frank AC, Lobry JR., Gene 238(1), 1999
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Localization of Tropheryma whippelii rRNA in tissues from patients with Whipple's disease.
Fredricks DN, Relman DA., J. Infect. Dis. 183(8), 2001
PMID: 11262205

Genetic diversity in the Mycobacterium tuberculosis complex based on variable numbers of tandem DNA repeats.
Frothingham R, Meeker-O'Connell WA., Microbiology (Reading, Engl.) 144 ( Pt 5)(), 1998
PMID: 9611793

Corynebacterium efficiens sp. nov., a glutamic-acid-producing species from soil and vegetables.
Fudou R, Jojima Y, Seto A, Yamada K, Kimura E, Nakamatsu T, Hiraishi A, Yamanaka S., Int. J. Syst. Evol. Microbiol. 52(Pt 4), 2002
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Intragenic position of UUA codons in streptomycetes.
Fuglsang A., Microbiology (Reading, Engl.) 151(Pt 10), 2005
PMID: 16207899

Heterogeneity within human-derived centers for disease control and prevention (CDC) coryneform group ANF-1-like bacteria and description of Corynebacterium auris sp. nov.
Funke G, Lawson PA, Collins MD., Int. J. Syst. Bacteriol. 45(4), 1995
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Clinical microbiology of coryneform bacteria.
Funke G, von Graevenitz A, Clarridge JE 3rd, Bernard KA., Clin. Microbiol. Rev. 10(1), 1997
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Conserved indels in protein sequences that are characteristic of the phylum Actinobacteria.
Gao B, Gupta RS., Int. J. Syst. Evol. Microbiol. 55(Pt 6), 2005
PMID: 16280504

Signature proteins that are distinctive characteristics of Actinobacteria and their subgroups.
Gao B, Paramanathan R, Gupta RS., Antonie Van Leeuwenhoek 90(1), 2006
PMID: 16670965

Expression and characterization of alpha-(1,4)-glucan branching enzyme Rv1326c of Mycobacterium tuberculosis H37Rv.
Garg SK, Alam MS, Kishan KV, Agrawal P., Protein Expr. Purif. 51(2), 2006
PMID: 17005418

The complete genome sequence of Mycobacterium bovis.
Garnier T, Eiglmeier K, Camus JC, Medina N, Mansoor H, Pryor M, Duthoy S, Grondin S, Lacroix C, Monsempe C, Simon S, Harris B, Atkin R, Doggett J, Mayes R, Keating L, Wheeler PR, Parkhill J, Barrell BG, Cole ST, Gordon SV, Hewinson RG., Proc. Natl. Acad. Sci. U.S.A. 100(13), 2003
PMID: 12788972

Identification, cloning, and expression of the CAMP factor gene (cfa) of group A streptococci.
Gase K, Ferretti JJ, Primeaux C, McShan WM., Infect. Immun. 67(9), 1999
PMID: 10456923

Assembly of distinct pilus structures on the surface of Corynebacterium diphtheriae.
Gaspar AH, Ton-That H., J. Bacteriol. 188(4), 2006
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Isolation by genetic labeling of a new mycobacterial plasmid, pJAZ38, from Mycobacterium fortuitum.
Gavigan JA, Ainsa JA, Perez E, Otal I, Martin C., J. Bacteriol. 179(13), 1997
PMID: 9209023

Amyloids--a functional coat for microorganisms.
Gebbink MF, Claessen D, Bouma B, Dijkhuizen L, Wosten HA., Nat. Rev. Microbiol. 3(4), 2005
PMID: 15806095

Mycolactone: a polyketide toxin from Mycobacterium ulcerans required for virulence.
George KM, Chatterjee D, Gunawardana G, Welty D, Hayman J, Lee R, Small PL., Science 283(5403), 1999
PMID: 9933171

Mycobacterium avium subsp. paratuberculosis strains isolated from Crohn's disease patients and animal species exhibit similar polymorphic locus patterns.
Ghadiali AH, Strother M, Naser SA, Manning EJ, Sreevatsan S., J. Clin. Microbiol. 42(11), 2004
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Dietary modulation of the human colonic microbiota: introducing the concept of prebiotics.
Gibson GR, Roberfroid MB., J. Nutr. 125(6), 1995
PMID: 7782892

Determination of the core of a minimal bacterial gene set.
Gil R, Silva FJ, Pereto J, Moya A., Microbiol. Mol. Biol. Rev. 68(3), 2004
PMID: 15353568

Metagenomic analysis of the human distal gut microbiome.
Gill SR, Pop M, Deboy RT, Eckburg PB, Turnbaugh PJ, Samuel BS, Gordon JI, Relman DA, Fraser-Liggett CM, Nelson KE., Science 312(5778), 2006
PMID: 16741115

Simultaneous genotyping and species identification using hybridization pattern recognition analysis of generic Mycobacterium DNA arrays.
Gingeras TR, Ghandour G, Wang E, Berno A, Small PM, Drobniewski F, Alland D, Desmond E, Holodniy M, Drenkow J., Genome Res. 8(5), 1998
PMID: 9582189

Helicobacter pylori arginase inhibits nitric oxide production by eukaryotic cells: a strategy for bacterial survival.
Gobert AP, McGee DJ, Akhtar M, Mendz GL, Newton JC, Cheng Y, Mobley HL, Wilson KT., Proc. Natl. Acad. Sci. U.S.A. 98(24), 2001
PMID: 11717441

Prokaryotic evolution in light of gene transfer.
Gogarten JP, Doolittle WF, Lawrence JG., Mol. Biol. Evol. 19(12), 2002
PMID: 12446813

Ecology of actinomycetes.
Goodfellow M, Williams ST., Annu. Rev. Microbiol. 37(), 1983
PMID: 6357051

New insertion sequences and a novel repeated sequence in the genome of Mycobacterium tuberculosis H37Rv.
Gordon SV, Heym B, Parkhill J, Barrell B, Cole ST., Microbiology (Reading, Engl.) 145 ( Pt 4)(), 1999
PMID: 10220167

The 387 kb linear plasmid pPZG101 of Streptomyces rimosus and its interactions with the chromosome.
Gravius B, Glocker D, Pigac J, Pandza K, Hranueli D, Cullum J., Microbiology (Reading, Engl.) 140 ( Pt 9)(), 1994
PMID: 7952179

Interaction of Propionibacterium acnes with skin lipids in vitro.
Gribbon EM, Cunliffe WJ, Holland KT., J. Gen. Microbiol. 139(8), 1993
PMID: 8409917

The microaerophily and photosensitivity of Propionibacterium acnes.
Gribbon EM, Shoesmith JG, Cunliffe WJ, Holland KT., J. Appl. Bacteriol. 77(5), 1994
PMID: 8002482

Distinctive protein signatures provide molecular markers and evidence for the monophyletic nature of the deinococcus-thermus phylum.
Griffiths E, Gupta RS., J. Bacteriol. 186(10), 2004
PMID: 15126471

Lateral transfers of serine hydroxymethyltransferase (glyA) and UDP-N-acetylglucosamine enolpyruvyl transferase (murA) genes from free-living Actinobacteria to the parasitic chlamydiae.
Griffiths E, Gupta RS., J. Mol. Evol. 63(2), 2006
PMID: 16830093

Analyzing genomes with cumulative skew diagrams.
Grigoriev A., Nucleic Acids Res. 26(10), 1998
PMID: 9580676

From complete genomes to measures of substitution rate variability within and between proteins.
Grishin NV, Wolf YI, Koonin EV., Genome Res. 10(7), 2000
PMID: 10899148

Gut flora in health and disease.
Guarner F, Malagelada JR., Lancet 361(9356), 2003
PMID: 12583961

Molecular characterization of Bifidobacterium longum biovar longum NAL8 plasmids and construction of a novel replicon screening system.
Guglielmetti S, Karp M, Mora D, Tamagnini I, Parini C., Appl. Microbiol. Biotechnol. 74(5), 2006
PMID: 17151871

The phylogeny and signature sequences characteristics of Fibrobacteres, Chlorobi, and Bacteroidetes.
Gupta RS., Crit. Rev. Microbiol. 30(2), 2004
PMID: 15239383

The phylogeny of proteobacteria: relationships to other eubacterial phyla and eukaryotes.
Gupta RS., FEMS Microbiol. Rev. 24(4), 2000
PMID: 10978543

Protein phylogenies and signature sequences: A reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes.
Gupta RS., Microbiol. Mol. Biol. Rev. 62(4), 1998
PMID: 9841678

Molecular signatures in protein sequences that are characteristic of cyanobacteria and plastid homologues.
Gupta RS, Pereira M, Chandrasekera C, Johari V., Int. J. Syst. Evol. Microbiol. 53(Pt 6), 2003
PMID: 14657112

Ancient origin and gene mosaicism of the progenitor of Mycobacterium tuberculosis.
Gutierrez MC, Brisse S, Brosch R, Fabre M, Omais B, Marmiesse M, Supply P, Vincent V., PLoS Pathog. 1(1), 2005
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The pathology of diphtheria.
Hadfield TL, McEvoy P, Polotsky Y, Tzinserling VA, Yakovlev AA., J. Infect. Dis. 181 Suppl 1(), 2000
PMID: 10657202

Expression of the mceA, esat-6 and hspX genes in Mycobacterium tuberculosis and their responses to aerobic conditions and to restricted oxygen supply.
Haile Y, Bjune G, Wiker HG., Microbiology (Reading, Engl.) 148(Pt 12), 2002
PMID: 12480892

Classification of hyper-variable Corynebacterium glutamicum surface-layer proteins by sequence analyses and atomic force microscopy.
Hansmeier N, Bartels FW, Ros R, Anselmetti D, Tauch A, Puhler A, Kalinowski J., J. Biotechnol. 112(1-2), 2004
PMID: 15288952

Crohn's disease and Mycobacterium avium subsp. paratuberculosis: current issues.
Harris JE, Lammerding AM., J. Food Prot. 64(12), 2001
PMID: 11770646

DNA sequence, structure and gene expression of mycobacteriophage L5: a phage system for mycobacterial genetics.
Hatfull GF, Sarkis GJ., Mol. Microbiol. 7(3), 1993
PMID: 8459766

Streptomyces coelicolor A3(2) plasmid SCP2*: deductions from the complete sequence.
Haug I, Weissenborn A, Brolle D, Bentley S, Kieser T, Altenbuchner J., Microbiology (Reading, Engl.) 149(Pt 2), 2003
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Postulated epidemiology of Mycobacterium ulcerans infection.
Hayman J., Int J Epidemiol 20(4), 1991
PMID: 1800409

Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage.
Hendrix RW, Smith MC, Burns RN, Ford ME, Hatfull GF., Proc. Natl. Acad. Sci. U.S.A. 96(5), 1999
PMID: 10051617

Bifidobacterium longum endogalactanase liberates galactotriose from type I galactans.
Hinz SW, Pastink MI, van den Broek LA, Vincken JP, Voragen AG., Appl. Environ. Microbiol. 71(9), 2005
PMID: 16151143

Improvement of desulfurization activity in Rhodococcus erythropolis KA2-5-1 by genetic engineering.
Hirasawa K, Ishii Y, Kobayashi M, Koizumi K, Maruhashi K., Biosci. Biotechnol. Biochem. 65(2), 2001
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Stable association between strains of Mycobacterium tuberculosis and their human host populations.
Hirsh AE, Tsolaki AG, DeRiemer K, Feldman MW, Small PM., Proc. Natl. Acad. Sci. U.S.A. 101(14), 2004
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Comparison of Mycobacterium tuberculosis genomes reveals frequent deletions in a 20 kb variable region in clinical isolates.
Ho TB, Robertson BD, Taylor GM, Shaw RJ, Young DB., Yeast 17(4), 2000
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Propionibacterium acnes and acne.
Holland KT, Aldana O, Bojar RA, Cunliffe WJ, Eady EA, Holland DB, Ingham E, McGeown C, Till A, Walters C., Dermatology (Basel) 196(1), 1998
PMID: 9557229

Biology and molecular epidemiology of diphtheria toxin and the tox gene.
Holmes RK., J. Infect. Dis. 181 Suppl 1(), 2000
PMID: 10657208

Characterization of the Streptomyces coelicolor A3(2) wblE gene, encoding a homologue of the sporulation transcription factor.
Homerova D, Sevcikova J, Kormanec J., Folia Microbiol. (Praha) 48(4), 2003
PMID: 14533480

Phylogenetic analysis based on genome-scale metabolic pathway reaction content.
Hong SH, Kim TY, Lee SY., Appl. Microbiol. Biotechnol. 65(2), 2004
PMID: 15197509

Systems biology and new technologies enable predictive and preventative medicine.
Hood L, Heath JR, Phelps ME, Lin B., Science 306(5696), 2004
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Soil to genomics: the Streptomyces chromosome.
Hopwood DA., Annu. Rev. Genet. 40(), 2006
PMID: 16761950

AUTHOR UNKNOWN, 2007

Mucin degradation in human colon ecosystems. Isolation and properties of fecal strains that degrade ABH blood group antigens and oligosaccharides from mucin glycoproteins.
Hoskins LC, Agustines M, McKee WB, Boulding ET, Kriaris M, Niedermeyer G., J. Clin. Invest. 75(3), 1985
PMID: 3920248

Novel genetic polymorphisms that further delineate the phylogeny of the Mycobacterium tuberculosis complex.
Huard RC, Fabre M, de Haas P, Lazzarini LC, van Soolingen D, Cousins D, Ho JL., J. Bacteriol. 188(12), 2006
PMID: 16740934

Nocardia species as an etiologic agent in Parkinson's disease: serological testing in a case-control study.
Hubble JP, Cao T, Kjelstrom JA, Koller WC, Beaman BL., J. Clin. Microbiol. 33(10), 1995
PMID: 8567923

The sulfur-regulated arylsulfatase gene cluster of Pseudomonas aeruginosa, a new member of the cys regulon.
Hummerjohann J, Laudenbach S, Retey J, Leisinger T, Kertesz MA., J. Bacteriol. 182(7), 2000
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Phylogenetic trees based on gene content.
Huson DH, Steel M., Bioinformatics 20(13), 2004
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Sensing and responding to diverse extracellular signals? Analysis of the sensor kinases and response regulators of Streptomyces coelicolor A3(2).
Hutchings MI, Hoskisson PA, Chandra G, Buttner MJ., Microbiology (Reading, Engl.) 150(Pt 9), 2004
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Propionibacterium acnes endocarditis.
Huynh TT, Walling AD, Miller MA, Leung TK, Leclerc Y, Dragtakis L., Can J Cardiol 11(9), 1995
PMID: 7585277

Complete genome sequence and comparative analysis of the industrial microorganism Streptomyces avermitilis.
Ikeda H, Ishikawa J, Hanamoto A, Shinose M, Kikuchi H, Shiba T, Sakaki Y, Hattori M, Omura S., Nat. Biotechnol. 21(5), 2003
PMID: 12692562

The Corynebacterium glutamicum genome: features and impacts on biotechnological processes.
Ikeda M, Nakagawa S., Appl. Microbiol. Biotechnol. 62(2-3), 2003
PMID: 12743753

Multiple novel promoters from the early region in the Streptomyces temperate phage phi C31 are activated during lytic development.
Ingham CJ, Crombie HJ, Bruton CJ, Chater KF, Hartley NM, Murphy GJ, Smith MC., Mol. Microbiol. 9(6), 1993
PMID: 7934940

The immunology of Propionibacterium acnes and acne.
Ingham E., Curr. Opin. Infect. Dis. 12(3), 1999
PMID: 17035778

The complete genomic sequence of Nocardia farcinica IFM 10152.
Ishikawa J, Yamashita A, Mikami Y, Hoshino Y, Kurita H, Hotta K, Shiba T, Hattori M., Proc. Natl. Acad. Sci. U.S.A. 101(41), 2004
PMID: 15466710

A serpin from the gut bacterium Bifidobacterium longum inhibits eukaryotic elastase-like serine proteases.
Ivanov D, Emonet C, Foata F, Affolter M, Delley M, Fisseha M, Blum-Sperisen S, Kochhar S, Arigoni F., J. Biol. Chem. 281(25), 2006
PMID: 16627467

AUTHOR UNKNOWN, 1987

Leprosy.
Jacobson RR, Krahenbuhl JL., Lancet 353(9153), 1999
PMID: 10030346

The endo-beta-1,4-glucanase CelA of Clavibacter michiganensis subsp. michiganensis is a pathogenicity determinant required for induction of bacterial wilt of tomato.
Jahr H, Dreier J, Meletzus D, Bahro R, Eichenlaub R., Mol. Plant Microbe Interact. 13(7), 2000
PMID: 10875331

Severe infections caused by Propionibacterium acnes: an underestimated pathogen in late postoperative infections.
Jakab E, Zbinden R, Gubler J, Ruef C, von Graevenitz A, Krause M., Yale J Biol Med 69(6), 1996
PMID: 9436290

Evidence that the Streptomyces developmental protein WhiD, a member of the WhiB family, binds a [4Fe-4S] cluster.
Jakimowicz P, Cheesman MR, Bishai WR, Chater KF, Thomson AJ, Buttner MJ., J. Biol. Chem. 280(9), 2004
PMID: 15615709

Out of the iron age: new insights into the critical role of manganese homeostasis in bacteria.
Jakubovics NS, Jenkinson HF., Microbiology (Reading, Engl.) 147(Pt 7), 2001
PMID: 11429449

Analysis of nucleotide methylation in DNA from Corynebacterium glutamicum and related species.
Jang KH, Chambers PJ, Britz ML., FEMS Microbiol. Lett. 136(3), 1996
PMID: 8867385

Identification of genes that are associated with DNA repeats in prokaryotes.
Jansen R, Embden JD, Gaastra W, Schouls LM., Mol. Microbiol. 43(6), 2002
PMID: 11952905

Improved culturability of soil bacteria and isolation in pure culture of novel members of the divisions Acidobacteria, Actinobacteria, Proteobacteria, and Verrucomicrobia.
Janssen PH, Yates PS, Grinton BE, Taylor PM, Sait M., Appl. Environ. Microbiol. 68(5), 2002
PMID: 11976113

Propionibacterium acnes and inflammation in acne; P. acnes has T-cell mitogenic activity.
Jappe U, Ingham E, Henwood J, Holland KT., Br. J. Dermatol. 146(2), 2002
PMID: 11903228

New approach to phylogenetic analysis of the genus Bifidobacterium based on partial HSP60 gene sequences.
Jian W, Zhu L, Dong X., Int. J. Syst. Evol. Microbiol. 51(Pt 5), 2001
PMID: 11594590

Efficient transformation system for Propionibacterium freudenreichii based on a novel vector.
Jore JP, van Luijk N, Luiten RG, van der Werf MJ, Pouwels PH., Appl. Environ. Microbiol. 67(2), 2001
PMID: 11157209

Tylosin resistance in Arcanobacterium pyogenes is encoded by an erm X determinant.
Jost BH, Field AC, Trinh HT, Songer JG, Billington SJ., Antimicrob. Agents Chemother. 47(11), 2003
PMID: 14576111

AUTHOR UNKNOWN, 2005

The complete Corynebacterium glutamicum ATCC 13032 genome sequence and its impact on the production of L-aspartate-derived amino acids and vitamins.
Kalinowski J, Bathe B, Bartels D, Bischoff N, Bott M, Burkovski A, Dusch N, Eggeling L, Eikmanns BJ, Gaigalat L, Goesmann A, Hartmann M, Huthmacher K, Kramer R, Linke B, McHardy AC, Meyer F, Mockel B, Pfefferle W, Puhler A, Rey DA, Ruckert C, Rupp O, Sahm H, Wendisch VF, Wiegrabe I, Tauch A., J. Biotechnol. 104(1-3), 2003
PMID: 12948626

Genetic and biochemical analysis of the aspartokinase from Corynebacterium glutamicum.
Kalinowski J, Cremer J, Bachmann B, Eggeling L, Sahm H, Puhler A., Mol. Microbiol. 5(5), 1991
PMID: 1956296

The terminal structures of linear plasmids from Rhodococcus opacus.
Kalkus J, Menne R, Reh M, Schlegel HG., Microbiology (Reading, Engl.) 144 ( Pt 5)(), 1998
PMID: 9611802

Differentiation of phylogenetically related slowly growing mycobacteria by their gyrB sequences.
Kasai H, Ezaki T, Harayama S., J. Clin. Microbiol. 38(1), 2000
PMID: 10618105

Molecular cloning and characterization of Bifidobacterium bifidum 1,2-alpha-L-fucosidase (AfcA), a novel inverting glycosidase (glycoside hydrolase family 95).
Katayama T, Sakuma A, Kimura T, Makimura Y, Hiratake J, Sakata K, Yamanoi T, Kumagai H, Yamamoto K., J. Bacteriol. 186(15), 2004
PMID: 15262925

The nature and consequence of genetic variability within Mycobacterium tuberculosis.
Kato-Maeda M, Bifani PJ, Kreiswirth BN, Small PM., J. Clin. Invest. 107(5), 2001
PMID: 11238552

The Five "Classical" Plant Hormones.
Kende H, Zeevaart J., Plant Cell 9(7), 1997
PMID: 12237383

AUTHOR UNKNOWN, 1984

Plasmids in group JK coryneform bacteria isolated in a single hospital.
Kerry-Williams SM, Noble WC., J Hyg (Lond) 97(2), 1986
PMID: 3023480

Molecular epidemiology of group JK Corynebacterium on a cancer ward: lack of evidence for patient-to-patient transmission.
Khabbaz RF, Kaper JB, Moody MR, Schimpff SC, Tenney JH., J. Infect. Dis. 154(1), 1986
PMID: 3711691

Characterization of pRGO1, a plasmid from Propionibacterium acidipropionici, and its use for development of a host-vector system in propionibacteria.
Kiatpapan P, Hashimoto Y, Nakamura H, Piao YZ, Ono H, Yamashita M, Murooka Y., Appl. Environ. Microbiol. 66(11), 2000
PMID: 11055911

AUTHOR UNKNOWN, 2000

Identification of mycobacterial species by comparative sequence analysis of the RNA polymerase gene (rpoB).
Kim BJ, Lee SH, Lyu MA, Kim SJ, Bai GH, Chae GT, Kim EC, Cha CY, Kook YH., J. Clin. Microbiol. 37(6), 1999
PMID: 10325313

The whcE gene of Corynebacterium glutamicum is important for survival following heat and oxidative stress.
Kim TH, Park JS, Kim HJ, Kim Y, Kim P, Lee HS., Biochem. Biophys. Res. Commun. 337(3), 2005
PMID: 16212936

AUTHOR UNKNOWN, 1957

Cryptic plasmids of Mycobacterium avium: Tn552 to the rescue.
Kirby C, Waring A, Griffin TJ, Falkinham JO 3rd, Grindley ND, Derbyshire KM., Mol. Microbiol. 43(1), 2002
PMID: 11849545

rRNA operon copy number reflects ecological strategies of bacteria.
Klappenbach JA, Dunbar JM, Schmidt TM., Appl. Environ. Microbiol. 66(4), 2000
PMID: 10742207

Evolution of minimal-gene-sets in host-dependent bacteria.
Klasson L, Andersson SG., Trends Microbiol. 12(1), 2004
PMID: 14700550

Lessons from the genomes of bifidobacteria.
Klijn A, Mercenier A, Arigoni F., FEMS Microbiol. Rev. 29(3), 2005
PMID: 15939502

Dynamic bacterial genome organization.
Kolsto AB., Mol. Microbiol. 24(2), 1997
PMID: 9159511

Cloning of the conserved regulatory operon by its aerial mycelium-inducing activity in an amfR mutant of Streptomyces griseus.
Komatsu M, Kuwahara Y, Hiroishi A, Hosono K, Beppu T, Ueda K., Gene 306(), 2003
PMID: 12657469

Trends between gene content and genome size in prokaryotic species with larger genomes.
Konstantinidis KT, Tiedje JM., Proc. Natl. Acad. Sci. U.S.A. 101(9), 2004
PMID: 14973198

SHOT: a web server for the construction of genome phylogenies.
Korbel JO, Snel B, Huynen MA, Bork P., Trends Genet. 18(3), 2002
PMID: 11858840

The role of innate immunity in the pathogenesis of acne.
Koreck A, Pivarcsi A, Dobozy A, Kemeny L., Dermatology (Basel) 206(2), 2003
PMID: 12592074

A small cryptic plasmid from Rhodococcus erythropolis: characterization and utility for gene expression.
Kostichka K, Tao L, Bramucci M, Tomb JF, Nagarajan V, Cheng Q., Appl. Microbiol. Biotechnol. 62(1), 2003
PMID: 12835922

Biochemistry of homologous recombination in Escherichia coli.
Kowalczykowski SC, Dixon DA, Eggleston AK, Lauder SD, Rehrauer WM., Microbiol. Rev. 58(3), 1994
PMID: 7968921

Extensive surface diversity of a commensal microorganism by multiple DNA inversions.
Krinos CM, Coyne MJ, Weinacht KG, Tzianabos AO, Kasper DL, Comstock LE., Nature 414(6863), 2001
PMID: 11734857

Cryptic plasmid pKA22 isolated from the naphthalene degrading derivative of Rhodococcus rhodochrous NCIMB13064.
Kulakov LA, Larkin MJ, Kulakova AN., Plasmid 38(1), 1997
PMID: 9281496

Comparison of mammalian cell entry operons of mycobacteria: in silico analysis and expression profiling.
Kumar A, Chandolia A, Chaudhry U, Brahmachari V, Bose M., FEMS Immunol. Med. Microbiol. 43(2), 2005
PMID: 15681149

The balance of driving forces during genome evolution in prokaryotes.
Kunin V, Ouzounis CA., Genome Res. 13(7), 2003
PMID: 12840037

Identification and chromosomal distribution of DNA sequence segments conserved since divergence of Escherichia coli and Bacillus subtilis.
Kunisawa T., J. Mol. Evol. 40(6), 1995
PMID: 7643408

Analysis of the Corynebacterium diphtheriae DtxR regulon: identification of a putative siderophore synthesis and transport system that is similar to the Yersinia high-pathogenicity island-encoded yersiniabactin synthesis and uptake system.
Kunkle CA, Schmitt MP., J. Bacteriol. 185(23), 2003
PMID: 14617647

The complete genome sequence of the gram-positive bacterium Bacillus subtilis.
Kunst F, Ogasawara N, Moszer I, Albertini AM, Alloni G, Azevedo V, Bertero MG, Bessieres P, Bolotin A, Borchert S, Borriss R, Boursier L, Brans A, Braun M, Brignell SC, Bron S, Brouillet S, Bruschi CV, Caldwell B, Capuano V, Carter NM, Choi SK, Cordani JJ, Connerton IF, Cummings NJ, Daniel RA, Denziot F, Devine KM, Dusterhoft A, Ehrlich SD, Emmerson PT, Entian KD, Errington J, Fabret C, Ferrari E, Foulger D, Fritz C, Fujita M, Fujita Y, Fuma S, Galizzi A, Galleron N, Ghim SY, Glaser P, Goffeau A, Golightly EJ, Grandi G, Guiseppi G, Guy BJ, Haga K, Haiech J, Harwood CR, Henaut A, Hilbert H, Holsappel S, Hosono S, Hullo MF, Itaya M, Jones L, Joris B, Karamata D, Kasahara Y, Klaerr-Blanchard M, Klein C, Kobayashi Y, Koetter P, Koningstein G, Krogh S, Kumano M, Kurita K, Lapidus A, Lardinois S, Lauber J, Lazarevic V, Lee SM, Levine A, Liu H, Masuda S, Mauel C, Medigue C, Medina N, Mellado RP, Mizuno M, Moestl D, Nakai S, Noback M, Noone D, O'Reilly M, Ogawa K, Ogiwara A, Oudega B, Park SH, Parro V, Pohl TM, Portelle D, Porwollik S, Prescott AM, Presecan E, Pujic P, Purnelle B, Rapoport G, Rey M, Reynolds S, Rieger M, Rivolta C, Rocha E, Roche B, Rose M, Sadaie Y, Sato T, Scanlan E, Schleich S, Schroeter R, Scoffone F, Sekiguchi J, Sekowska A, Seror SJ, Serror P, Shin BS, Soldo B, Sorokin A, Tacconi E, Takagi T, Takahashi H, Takemaru K, Takeuchi M, Tamakoshi A, Tanaka T, Terpstra P, Togoni A, Tosato V, Uchiyama S, Vandebol M, Vannier F, Vassarotti A, Viari A, Wambutt R, Wedler H, Weitzenegger T, Winters P, Wipat A, Yamamoto H, Yamane K, Yasumoto K, Yata K, Yoshida K, Yoshikawa HF, Zumstein E, Yoshikawa H, Danchin A., Nature 390(6657), 1997
PMID: 9384377

Oligosaccharides in human milk: structural, functional, and metabolic aspects.
Kunz C, Rudloff S, Baier W, Klein N, Strobel S., Annu. Rev. Nutr. 20(), 2000
PMID: 10940350

Determination of a 15437 bp nucleotide sequence around the inhA gene of Mycobacterium avium and similarity analysis of the products of putative ORFs.
Labo M, Gusberti L, Rossi ED, Speziale P, Riccardi G., Microbiology (Reading, Engl.) 144 ( Pt 3)(), 1998
PMID: 9534249

Cytochrome p450 complement (CYPome) of the avermectin-producer Streptomyces avermitilis and comparison to that of Streptomyces coelicolor A3(2).
Lamb DC, Ikeda H, Nelson DR, Ishikawa J, Skaug T, Jackson C, Omura S, Waterman MR, Kelly SL., Biochem. Biophys. Res. Commun. 307(3), 2003
PMID: 12893267

The cytochrome P450 complement (CYPome) of Streptomyces coelicolor A3(2).
Lamb DC, Skaug T, Song HL, Jackson CJ, Podust LM, Waterman MR, Kell DB, Kelly DE, Kelly SL., J. Biol. Chem. 277(27), 2002
PMID: 11943767

Intraspecies variation in bacterial genomes: the need for a species genome concept.
Lan R, Reeves PR., Trends Microbiol. 8(9), 2000
PMID: 10989306

DNA processing reactions in bacterial conjugation.
Lanka E, Wilkins BM., Annu. Rev. Biochem. 64(), 1995
PMID: 7574478

Pleiotropic morphological and antibiotic deficiencies result from mutations in a gene encoding a tRNA-like product in Streptomyces coelicolor A3(2).
Lawlor EJ, Baylis HA, Chater KF., Genes Dev. 1(10), 1987
PMID: 2448187

Getting better with bifidobacteria.
Leahy SC, Higgins DG, Fitzgerald GF, van Sinderen D., J. Appl. Microbiol. 98(6), 2005
PMID: 15916644

Biology of actinomycetes.
Lechevalier HA, Lechevalier MP., Annu. Rev. Microbiol. 21(), 1967
PMID: 4860270

A transgenic model for listeriosis: role of internalin in crossing the intestinal barrier.
Lecuit M, Vandormael-Pournin S, Lefort J, Huerre M, Gounon P, Dupuy C, Babinet C, Cossart P., Science 292(5522), 2001
PMID: 11387478

Genomic sequence and transcriptional analysis of a 23-kilobase mycobacterial linear plasmid: evidence for horizontal transfer and identification of plasmid maintenance systems.
Le Dantec C, Winter N, Gicquel B, Vincent V, Picardeau M., J. Bacteriol. 183(7), 2001
PMID: 11244052

A master regulator sigmaB governs osmotic and oxidative response as well as differentiation via a network of sigma factors in Streptomyces coelicolor.
Lee EJ, Karoonuthaisiri N, Kim HS, Park JH, Cha CJ, Kao CM, Roe JH., Mol. Microbiol. 57(5), 2005
PMID: 16101999

Chitosan oligosaccharides, dp 2-8, have prebiotic effect on the Bifidobacterium bifidium and Lactobacillus sp.
Lee HW, Park YS, Jung JS, Shin WS., Anaerobe 8(6), 2002
PMID: 16887676

Sequence analysis of two cryptic plasmids from Bifidobacterium longum DJO10A and construction of a shuttle cloning vector.
Lee JH, O'Sullivan DJ., Appl. Environ. Microbiol. 72(1), 2006
PMID: 16391088

Site-specific integration of mycobacteriophage L5: integration-proficient vectors for Mycobacterium smegmatis, Mycobacterium tuberculosis, and bacille Calmette-Guerin.
Lee MH, Pascopella L, Jacobs WR Jr, Hatfull GF., Proc. Natl. Acad. Sci. U.S.A. 88(8), 1991
PMID: 1901654

Availability of specific reductases controls the temporal activity of the cytochrome P450 complement of Streptomyces coelicolor A3(2).
Lei L, Waterman MR, Fulco AJ, Kelly SL, Lamb DC., Proc. Natl. Acad. Sci. U.S.A. 101(2), 2004
PMID: 14704268

Psi-Phi: exploring the outer limits of bacterial pseudogenes.
Lerat E, Ochman H., Genome Res. 14(11), 2004
PMID: 15479949

The use of a rare codon specifically during development?
Leskiw BK, Bibb MJ, Chater KF., Mol. Microbiol. 5(12), 1991
PMID: 1809830

TTA codons in some genes prevent their expression in a class of developmental, antibiotic-negative, Streptomyces mutants.
Leskiw BK, Lawlor EJ, Fernandez-Abalos JM, Chater KF., Proc. Natl. Acad. Sci. U.S.A. 88(6), 1991
PMID: 1826053

Accumulation of bldA-specified tRNA is temporally regulated in Streptomyces coelicolor A3(2).
Leskiw BK, Mah R, Lawlor EJ, Chater KF., J. Bacteriol. 175(7), 1993
PMID: 8458842

Biotechnological production of amino acids and derivatives: current status and prospects.
Leuchtenberger W, Huthmacher K, Drauz K., Appl. Microbiol. Biotechnol. 69(1), 2005
PMID: 16195792

The complete genome sequence of Mycobacterium avium subspecies paratuberculosis.
Li L, Bannantine JP, Zhang Q, Amonsin A, May BJ, Alt D, Banerji N, Kanjilal S, Kapur V., Proc. Natl. Acad. Sci. U.S.A. 102(35), 2005
PMID: 16116077

Characterization of the replicon of a 51-kb native plasmid from the gram-positive bacterium Leifsonia xyli subsp. cynodontis.
Li TY, Yin P, Zhou Y, Zhang Y, Zhang YY, Chen TA., FEMS Microbiol. Lett. 236(1), 2004
PMID: 15212787

A genetic and bioinformatic analysis of Streptomyces coelicolor genes containing TTA codons, possible targets for regulation by a developmentally significant tRNA.
Li W, Wu J, Tao W, Zhao C, Wang Y, He X, Chandra G, Zhou X, Deng Z, Chater KF, Tao M., FEMS Microbiol. Lett. 266(1), 2006
PMID: 17100986

A Mycobacterium avium PPE gene is associated with the ability of the bacterium to grow in macrophages and virulence in mice.
Li Y, Miltner E, Wu M, Petrofsky M, Bermudez LE., Cell. Microbiol. 7(4), 2005
PMID: 15760454

AUTHOR UNKNOWN, 2005

Bifidobacterium strains from resident infant human gastrointestinal microflora exert antimicrobial activity.
Lievin V, Peiffer I, Hudault S, Rochat F, Brassart D, Neeser JR, Servin AL., Gut 47(5), 2000
PMID: 11034580

The chromosomal DNA of Streptomyces lividans 66 is linear.
Lin YS, Kieser HM, Hopwood DA, Chen CW., Mol. Microbiol. 10(5), 1993
PMID: 7934869

Reverse transcriptase-mediated tropism switching in Bordetella bacteriophage.
Liu M, Deora R, Doulatov SR, Gingery M, Eiserling FA, Preston A, Maskell DJ, Simons RW, Cotter PA, Parkhill J, Miller JF., Science 295(5562), 2002
PMID: 11896279

Genome update: lactic acid bacteria genome sequencing is booming.
Liu M, van Enckevort FH, Siezen RJ., Microbiology (Reading, Engl.) 151(Pt 12), 2005
PMID: 16339927

Cloning and characterization of the replicon of the Nocardia italica plasmid, pNI100.
Liu YT, Su CM, Lee CH, Sui MJ, Chang YH, Lin WP, Wu WT, Chen CY., Plasmid 43(3), 2000
PMID: 10783301

Polarisation of prokaryotic chromosomes.
Lobry JR, Louarn JM., Curr. Opin. Microbiol. 6(2), 2003
PMID: 12732297

Genetics and molecular biology of Streptomyces bacteriophages.
Lomovskaya ND, Chater KF, Mkrtumian NM., Microbiol. Rev. 44(2), 1980
PMID: 6247632

Evolution of plant pathogenicity in Streptomyces.
Loria R, Kers J, Joshi M., Annu Rev Phytopathol 44(), 2006
PMID: 16719719

Genome sequence and analysis of the soil cellulolytic actinomycete Thermobifida fusca YX.
Lykidis A, Mavromatis K, Ivanova N, Anderson I, Land M, DiBartolo G, Martinez M, Lapidus A, Lucas S, Copeland A, Richardson P, Wilson DB, Kyrpides N., J. Bacteriol. 189(6), 2007
PMID: 17209016

Reassessment of the phylogenetic position of the bacterium associated with Whipple's disease and determination of the 16S-23S ribosomal intergenic spacer sequence.
Maiwald M, Ditton HJ, von Herbay A, Rainey FA, Stackebrandt E., Int. J. Syst. Bacteriol. 46(4), 1996
PMID: 8863438

Environmental occurrence of the Whipple's disease bacterium (Tropheryma whippelii).
Maiwald M, Schuhmacher F, Ditton HJ, von Herbay A., Appl. Environ. Microbiol. 64(2), 1998
PMID: 9464419

Corynebacterium diphtheriae employs specific minor pilins to target human pharyngeal epithelial cells.
Mandlik A, Swierczynski A, Das A, Ton-That H., Mol. Microbiol. 64(1), 2007
PMID: 17376076

Characterization of the plasmid pVS809 from Bifidobacterium globosum.
Mattarelli P, Biavati B, Alessandrini A, Crociani F, Scardovi V., New Microbiol. 17(4), 1994
PMID: 7861989

Cell surface components and adhesion in Corynebacterium diphtheriae.
Mattos-Guaraldi AL, Duarte Formiga LC, Pereira GA., Microbes Infect. 2(12), 2000
PMID: 11099937

Identification and characterization of a fructose phosphotransferase system in Bifidobacterium breve UCC2003.
Maze A, O'Connell-Motherway M, Fitzgerald GF, Deutscher J, van Sinderen D., Appl. Environ. Microbiol. 73(2), 2006
PMID: 17098914

Base composition skews, replication orientation, and gene orientation in 12 prokaryote genomes.
McLean MJ, Wolfe KH, Devine KM., J. Mol. Evol. 47(6), 1998
PMID: 9847411

Complete genome sequence of Rickettsia typhi and comparison with sequences of other rickettsiae.
McLeod MP, Qin X, Karpathy SE, Gioia J, Highlander SK, Fox GE, McNeill TZ, Jiang H, Muzny D, Jacob LS, Hawes AC, Sodergren E, Gill R, Hume J, Morgan M, Fan G, Amin AG, Gibbs RA, Hong C, Yu XJ, Walker DH, Weinstock GM., J. Bacteriol. 186(17), 2004
PMID: 15317790

Genome organization and characterization of mycobacteriophage Bxb1.
Mediavilla J, Jain S, Kriakov J, Ford ME, Duda RL, Jacobs WR Jr, Hendrix RW, Hatfull GF., Mol. Microbiol. 38(5), 2000
PMID: 11123671

E-cadherin is the receptor for internalin, a surface protein required for entry of L. monocytogenes into epithelial cells.
Mengaud J, Ohayon H, Gounon P, Mege R-M , Cossart P., Cell 84(6), 1996
PMID: 8601315

Transformation of the gram-positive bacterium Clavibacter xyli subsp. cynodontis by electroporation with plasmids from the IncP incompatibility group.
Metzler MC, Zhang YP, Chen TA., J. Bacteriol. 174(13), 1992
PMID: 1624442

Deletional bias and the evolution of bacterial genomes.
Mira A, Ochman H, Moran NA., Trends Genet. 17(10), 2001
PMID: 11585665

Propionibacterium acnes, a resident of lipid-rich human skin, produces a 33 kDa extracellular lipase encoded by gehA.
Miskin JE, Farrell AM, Cunliffe WJ, Holland KT., Microbiology (Reading, Engl.) 143 ( Pt 5)(), 1997
PMID: 9168624

AUTHOR UNKNOWN, 1997

The large linear plasmid pSLA2-L of Streptomyces rochei has an unusually condensed gene organization for secondary metabolism.
Mochizuki S, Hiratsu K, Suwa M, Ishii T, Sugino F, Yamada K, Kinashi H., Mol. Microbiol. 48(6), 2003
PMID: 12791134

Biological significance of a family of regularly spaced repeats in the genomes of Archaea, Bacteria and mitochondria.
Mojica FJ, Diez-Villasenor C, Soria E, Juez G., Mol. Microbiol. 36(1), 2000
PMID: 10760181

WhiD and WhiB, homologous proteins required for different stages of sporulation in Streptomyces coelicolor A3(2).
Molle V, Palframan WJ, Findlay KC, Buttner MJ., J. Bacteriol. 182(5), 2000
PMID: 10671449

On the origin of leprosy.
Monot M, Honore N, Garnier T, Araoz R, Coppee JY, Lacroix C, Sow S, Spencer JS, Truman RW, Williams DL, Gelber R, Virmond M, Flageul B, Cho SN, Ji B, Paniz-Mondolfi A, Convit J, Young S, Fine PE, Rasolofo V, Brennan PJ, Cole ST., Science 308(5724), 2005
PMID: 15894530

The genome sequence of the gram-positive sugarcane pathogen Leifsonia xyli subsp. xyli.
Monteiro-Vitorello CB, Camargo LE, Van Sluys MA, Kitajima JP, Truffi D, do Amaral AM, Harakava R, de Oliveira JC, Wood D, de Oliveira MC, Miyaki C, Takita MA, da Silva AC, Furlan LR, Carraro DM, Camarotte G, Almeida NF Jr, Carrer H, Coutinho LL, El-Dorry HA, Ferro MI, Gagliardi PR, Giglioti E, Goldman MH, Goldman GH, Kimura ET, Ferro ES, Kuramae EE, Lemos EG, Lemos MV, Mauro SM, Machado MA, Marino CL, Menck CF, Nunes LR, Oliveira RC, Pereira GG, Siqueira W, de Souza AA, Tsai SM, Zanca AS, Simpson AJ, Brumbley SM, Setubal JC., Mol. Plant Microbe Interact. 17(8), 2004
PMID: 15305603

Fine structure of Corynebacterium acnes.
Montes LF, Wilborn WH., J. Invest. Dermatol. 54(4), 1970
PMID: 4245203

Microbial minimalism: genome reduction in bacterial pathogens.
Moran NA., Cell 108(5), 2002
PMID: 11893328

Effects of iron limitation on adherence and cell surface carbohydrates of Corynebacterium diphtheriae strains.
Moreira LO, Andrade AF, Vale MD, Souza SM, Hirata R Jr, Asad LM, Asad NR, Monteiro-Leal LH, Previato JO, Mattos-Guaraldi AL., Appl. Environ. Microbiol. 69(10), 2003
PMID: 14532043

Ancestral antibiotic resistance in Mycobacterium tuberculosis.
Morris RP, Nguyen L, Gatfield J, Visconti K, Nguyen K, Schnappinger D, Ehrt S, Liu Y, Heifets L, Pieters J, Schoolnik G, Thompson CJ., Proc. Natl. Acad. Sci. U.S.A. 102(34), 2005
PMID: 16103351

Revisiting the evolution of Mycobacterium bovis.
Mostowy S, Inwald J, Gordon S, Martin C, Warren R, Kremer K, Cousins D, Behr MA., J. Bacteriol. 187(18), 2005
PMID: 16159772

Complete genome structure of the thermophilic cyanobacterium Thermosynechococcus elongatus BP-1 (supplement).
Nakamura Y, Kaneko T, Sato S, Ikeuchi M, Katoh H, Sasamoto S, Watanabe A, Iriguchi M, Kawashima K, Kimura T, Kishida Y, Kiyokawa C, Kohara M, Matsumoto M, Matsuno A, Nakazaki N, Shimpo S, Sugimoto M, Takeuchi C, Yamada M, Tabata S., DNA Res. 9(4), 2002
PMID: 12240836

The genome stability in Corynebacterium species due to lack of the recombinational repair system.
Nakamura Y, Nishio Y, Ikeo K, Gojobori T., Gene 317(1-2), 2003
PMID: 14604803

Sialic acid in human milk: composition and functions.
Nakano T, Sugawara M, Kawakami H., Acta Paediatr Taiwan 42(1), 2001
PMID: 11270179

Isolation and characterization of a rolling-circle-type plasmid from Rhodococcus erythropolis and application of the plasmid to multiple-recombinant-protein expression.
Nakashima N, Tamura T., Appl. Environ. Microbiol. 70(9), 2004
PMID: 15345444

A specific bacterial aminoacylase cleaves odorant precursors secreted in the human axilla.
Natsch A, Gfeller H, Gygax P, Schmid J, Acuna G., J. Biol. Chem. 278(8), 2002
PMID: 12468539

Transcriptional regulation of repressor synthesis in mycobacteriophage L5.
Nesbit CE, Levin ME, Donnelly-Wu MK, Hatfull GF., Mol. Microbiol. 17(6), 1995
PMID: 8594325

Mode of action of the antimicrobial peptide aureocin A53 from Staphylococcus aureus.
Netz DJ, Bastos Mdo C, Sahl HG., Appl. Environ. Microbiol. 68(11), 2002
PMID: 12406714

Biochemical characterisation and genetic analysis of aureocin A53, a new, atypical bacteriocin from Staphylococcus aureus.
Netz DJ, Pohl R, Beck-Sickinger AG, Selmer T, Pierik AJ, Bastos Mdo C, Sahl HG., J. Mol. Biol. 319(3), 2002
PMID: 12054867

Colonial differentiation in Streptomyces coelicolor depends on translation of a specific codon within the adpA gene.
Nguyen KT, Tenor J, Stettler H, Nguyen LT, Nguyen LD, Thompson CJ., J. Bacteriol. 185(24), 2003
PMID: 14645292

Molecular cloning and characterization of the alkaline ceramidase from Pseudomonas aeruginosa PA01.
Nieuwenhuizen WF, van Leeuwen S, Jack RW, Egmond MR, Gotz F., Protein Expr. Purif. 30(1), 2003
PMID: 12821326

Cloning and sequence analysis of a Streptomyces cholesterol esterase gene.
Nishimura M, Sugiyama M., Appl. Microbiol. Biotechnol. 41(4), 1994
PMID: 7765102

Comparative complete genome sequence analysis of the amino acid replacements responsible for the thermostability of Corynebacterium efficiens.
Nishio Y, Nakamura Y, Kawarabayasi Y, Usuda Y, Kimura E, Sugimoto S, Matsui K, Yamagishi A, Kikuchi H, Ikeo K, Gojobori T., Genome Res. 13(7), 2003
PMID: 12840036

Evolutionary process of amino acid biosynthesis in Corynebacterium at the whole genome level.
Nishio Y, Nakamura Y, Usuda Y, Sugimoto S, Matsui K, Kawarabayasi Y, Kikuchi H, Gojobori T, Ikeo K., Mol. Biol. Evol. 21(9), 2004
PMID: 15163767

SsgA-like proteins determine the fate of peptidoglycan during sporulation of Streptomyces coelicolor.
Noens EE, Mersinias V, Traag BA, Smith CP, Koerten HK, van Wezel GP., Mol. Microbiol. 58(4), 2005
PMID: 16262781

Genome characteristics of facultatively symbiotic Frankia sp. strains reflect host range and host plant biogeography.
Normand P, Lapierre P, Tisa LS, Gogarten JP, Alloisio N, Bagnarol E, Bassi CA, Berry AM, Bickhart DM, Choisne N, Couloux A, Cournoyer B, Cruveiller S, Daubin V, Demange N, Francino MP, Goltsman E, Huang Y, Kopp OR, Labarre L, Lapidus A, Lavire C, Marechal J, Martinez M, Mastronunzio JE, Mullin BC, Niemann J, Pujic P, Rawnsley T, Rouy Z, Schenowitz C, Sellstedt A, Tavares F, Tomkins JP, Vallenet D, Valverde C, Wall LG, Wang Y, Medigue C, Benson DR., Genome Res. 17(1), 2006
PMID: 17151343

The nature and dynamics of bacterial genomes.
Ochman H, Davalos LM., Science 311(5768), 2006
PMID: 16556833

Lateral gene transfer and the nature of bacterial innovation.
Ochman H, Lawrence JG, Groisman EA., Nature 405(6784), 2000
PMID: 10830951

Genes lost and genes found: evolution of bacterial pathogenesis and symbiosis.
Ochman H, Moran NA., Science 292(5519), 2001
PMID: 11352062

A novel methodology employing Corynebacterium glutamicum genome information to generate a new L-lysine-producing mutant.
Ohnishi J, Mitsuhashi S, Hayashi M, Ando S, Yokoi H, Ochiai K, Ikeda M., Appl. Microbiol. Biotechnol. 58(2), 2002
PMID: 11876415

Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites.
Omura S, Ikeda H, Ishikawa J, Hanamoto A, Takahashi C, Shinose M, Takahashi Y, Horikawa H, Nakazawa H, Osonoe T, Kikuchi H, Shiba T, Sakaki Y, Hattori M., Proc. Natl. Acad. Sci. U.S.A. 98(21), 2001
PMID: 11572948

AUTHOR UNKNOWN, 1997

Analysis of genes that encode DtxR-like transcriptional regulators in pathogenic and saprophytic corynebacterial species.
Oram DM, Avdalovic A, Holmes RK., Infect. Immun. 72(4), 2004
PMID: 15039307

Molecular characterisation of a 5.75-kb cryptic plasmid from Bifidobacterium breve NCFB 2258 and determination of mode of replication.
O'Riordan K, Fitzgerald GF., FEMS Microbiol. Lett. 174(2), 1999
PMID: 10339821

Corynebacterium resistens sp. nov., a new multidrug-resistant coryneform bacterium isolated from human infections.
Otsuka Y, Kawamura Y, Koyama T, Iihara H, Ohkusu K, Ezaki T., J. Clin. Microbiol. 43(8), 2005
PMID: 16081900

Probiotics: an overview of beneficial effects.
Ouwehand AC, Salminen S, Isolauri E., Antonie Van Leeuwenhoek 82(1-4), 2002
PMID: 12369194

Recombination between the linear plasmid pPZG101 and the linear chromosome of Streptomyces rimosus can lead to exchange of ends.
Pandza S, Biukovic G, Paravic A, Dadbin A, Cullum J, Hranueli D., Mol. Microbiol. 28(6), 1998
PMID: 9680206

Genome analyses of Streptomyces peucetius ATCC 27952 for the identification and comparison of cytochrome P450 complement with other Streptomyces.
Parajuli N, Basnet DB, Chan Lee H, Sohng JK, Liou K., Arch. Biochem. Biophys. 425(2), 2004
PMID: 15111132

Isolation and characterization of two plasmids from Bifidobacterium longum.
Park MS, Lee KH, Ji GE., Lett. Appl. Microbiol. 25(1), 1997
PMID: 9248072

Sequence analysis of plasmid pKJ50 from Bifidobacterium longum.
Park MS, Shin DW, Lee KH, Ji GE., Microbiology (Reading, Engl.) 145 ( Pt 3)(), 1999
PMID: 10217492

Genome sequence of Yersinia pestis, the causative agent of plague.
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Phylogenetic analysis of the genus Corynebacterium based on 16S rRNA gene sequences.
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Isolation of Mycobacterium tuberculosis mutants defective in the arrest of phagosome maturation.
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An investigation of nosocomial infection with Corynebacterium jeikeium in surgical patients using a ribosomal RNA gene probe.
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Fastidious xylem-limited bacterial plant pathogens.
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Cultivation of the bacillus of Whipple's disease.
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Culture and immunological detection of Tropheryma whippelii from the duodenum of a patient with Whipple disease.
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Tropheryma whipplei circulating in blood monocytes.
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The mycobacteria: an introduction to nomenclature and pathogenesis.
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A tRNA(2Arg) gene of Corynebacterium diphtheriae is the chromosomal integration site for toxinogenic bacteriophages.
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Cloning and sequence analysis of the mercury resistance operon of Streptomyces sp. Strain CHR28 reveals a novel putative second regulatory gene.
Ravel J, DiRuggiero J, Robb FT, Hill RT., J. Bacteriol. 182(8), 2000
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Leifsonia rubra sp. nov. and Leifsonia aurea sp. nov., psychrophiles from a pond in Antarctica.
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Characterization of Propionibacterium plasmids.
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Characterization and sequencing of a respiratory burst-inhibiting acid phosphatase from Francisella tularensis.
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Comparative analyses of fundamental differences in membrane transport capabilities in prokaryotes and eukaryotes.
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Genome-based design of a cell-free culture medium for Tropheryma whipplei.
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Conclusive evidence that the major T-cell antigens of the Mycobacterium tuberculosis complex ESAT-6 and CFP-10 form a tight, 1:1 complex and characterization of the structural properties of ESAT-6, CFP-10, and the ESAT-6*CFP-10 complex. Implications for pathogenesis and virulence.
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Isolation of Corynebacterium tuscaniae sp. nov. from blood cultures of a patient with endocarditis.
Riegel P, Creti R, Mattei R, Nieri A, von Hunolstein C., J. Clin. Microbiol. 44(2), 2006
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Bacteriocins: evolution, ecology, and application.
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Prebiotics: preferential substrates for specific germs?
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DNA repeats lead to the accelerated loss of gene order in bacteria.
Rocha EP., Trends Genet. 19(11), 2003
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Environmental genomics, the big picture?
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The Phage Proteomic Tree: a genome-based taxonomy for phage.
Rohwer F, Edwards R., J. Bacteriol. 184(16), 2002
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Genome-scale approaches to resolving incongruence in molecular phylogenies.
Rokas A, Williams BL, King N, Carroll SB., Nature 425(6960), 2003
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Gram-positive bacteria with a high DNA G+C content are characterized by a common insertion within their 23S rRNA genes.
Roller C, Ludwig W, Schleifer KH., J. Gen. Microbiol. 138(6), 1992
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Horizontal transfer of a virulence operon to the ancestor of Mycobacterium tuberculosis.
Rosas-Magallanes V, Deschavanne P, Quintana-Murci L, Brosch R, Gicquel B, Neyrolles O., Mol. Biol. Evol. 23(6), 2006
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The species concept for prokaryotes.
Rossello-Mora R, Amann R., FEMS Microbiol. Rev. 25(1), 2001
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Characterization of the plasmid pMB1 from Bifidobacterium longum and its use for shuttle vector construction.
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Screening for and identification of starch-, amylopectin-, and pullulan-degrading activities in bifidobacterial strains.
Ryan SM, Fitzgerald GF, van Sinderen D., Appl. Environ. Microbiol. 72(8), 2006
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Transcriptional regulation and characterization of a novel beta-fructofuranosidase-encoding gene from Bifidobacterium breve UCC2003.
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Skewed oligomers and origins of replication.
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Increased fertility of Corynebacterium glutamicum recipients in intergeneric matings with Escherichia coli after stress exposure.
Schafer A, Kalinowski J, Puhler A., Appl. Environ. Microbiol. 60(2), 1994
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Cloning and characterization of a DNA region encoding a stress-sensitive restriction system from Corynebacterium glutamicum ATCC 13032 and analysis of its role in intergeneric conjugation with Escherichia coli.
Schafer A, Schwarzer A, Kalinowski J, Puhler A., J. Bacteriol. 176(23), 1994
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The genome sequence of Bifidobacterium longum reflects its adaptation to the human gastrointestinal tract.
Schell MA, Karmirantzou M, Snel B, Vilanova D, Berger B, Pessi G, Zwahlen MC, Desiere F, Bork P, Delley M, Pridmore RD, Arigoni F., Proc. Natl. Acad. Sci. U.S.A. 99(22), 2002
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Plasmids in Corynebacterium diphtheriae and diphtheroids mediating erythromycin resistance.
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Relationship between pNG2, an Emr plasmid in Corynebacterium diphtheriae, and plasmids in aerobic skin coryneforms.
Schiller J, Strom M, Groman N, Coyle M., Antimicrob. Agents Chemother. 24(6), 1983
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Duplicated gene clusters suggest an interplay of glycogen and trehalose metabolism during sequential stages of aerial mycelium development in Streptomyces coelicolor A3(2).
Schneider D, Bruton CJ, Chater KF., Mol. Gen. Genet. 263(3), 2000
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Horizontal transfer of segments of the 16S rRNA genes between species of the Streptococcus anginosus group.
Schouls LM, Schot CS, Jacobs JA., J. Bacteriol. 185(24), 2003
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Recognition and degradation of chitin by streptomycetes.
Schrempf H., Antonie Van Leeuwenhoek 79(3-4), 2001
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Transformation of Corynebacterium diphtheriae, Corynebacterium ulcerans, Corynebacterium glutamicum, and Escherichia coli with the C. diphtheriae plasmid pNG2.
Serwold-Davis TM, Groman N, Rabin M., Proc. Natl. Acad. Sci. U.S.A. 84(14), 1987
PMID: 3110777

Rifampicin region revisited. New rifampicin-resistant and streptolydigin-resistant mutants in the beta subunit of Escherichia coli RNA polymerase.
Severinov K, Soushko M, Goldfarb A, Nikiforov V., J. Biol. Chem. 268(20), 1993
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Plasmids in the genus Bifidobacterium.
Sgorbati B, Scardovi V, Leblanc DJ., J. Gen. Microbiol. 128(9), 1982
PMID: 7175496

Brasilicardin A. A Novel Tricyclic Metabolite with Potent Immunosuppressive Activity from Actinomycete Nocardiabrasiliensis.
Shigemori H, Komaki H, Yazawa K, Mikami Y, Nemoto A, Tanaka Y, Sasaki T, In Y, Ishida T, Kobayashi J., J. Org. Chem. 63(20), 1998
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Genome sequence of the endocellular bacterial symbiont of aphids Buchnera sp. APS.
Shigenobu S, Watanabe H, Hattori M, Sakaki Y, Ishikawa H., Nature 407(6800), 2000
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The complete genome sequence of the Streptomyces temperate phage straight phiC31: evolutionary relationships to other viruses.
Smith MC, Burns RN, Wilson SE, Gregory MA., Nucleic Acids Res. 27(10), 1999
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Cluster of DnaA boxes involved in regulation of Streptomyces chromosome replication: from in silico to in vivo studies.
Smulczyk-Krawczyszyn A, Jakimowicz D, Ruban-Osmialowska B, Zawilak-Pawlik A, Majka J, Chater K, Zakrzewska-Czerwinska J., J. Bacteriol. 188(17), 2006
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Genome phylogeny based on gene content.
Snel B, Bork P, Huynen MA., Nat. Genet. 21(1), 1999
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Genomes in flux: the evolution of archaeal and proteobacterial gene content.
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Genome trees and the nature of genome evolution.
Snel B, Huynen MA, Dutilh BE., Annu. Rev. Microbiol. 59(), 2005
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Multiple paralogous genes related to the Streptomyces coelicolor developmental regulatory gene whiB are present in Streptomyces and other actinomycetes.
Soliveri JA, Gomez J, Bishai WR, Chater KF., Microbiology (Reading, Engl.) 146 ( Pt 2)(), 2000
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Purification and characterization of a low-molecular-mass T-cell antigen secreted by Mycobacterium tuberculosis.
Sorensen AL, Nagai S, Houen G, Andersen P, Andersen AB., Infect. Immun. 63(5), 1995
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Restricted structural gene polymorphism in the Mycobacterium tuberculosis complex indicates evolutionarily recent global dissemination.
Sreevatsan S, Pan X, Stockbauer KE, Connell ND, Kreiswirth BN, Whittam TS, Musser JM., Proc. Natl. Acad. Sci. U.S.A. 94(18), 1997
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Estimating and comparing the diversity of marine actinobacteria.
Stach JE, Bull AT., Antonie Van Leeuwenhoek 87(1), 2005
PMID: 15726285

AUTHOR UNKNOWN, 2000

Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology.
Stackebrandt E, Frederiksen W, Garrity GM, Grimont PA, Kampfer P, Maiden MC, Nesme X, Rossello-Mora R, Swings J, Truper HG, Vauterin L, Ward AC, Whitman WB., Int. J. Syst. Evol. Microbiol. 52(Pt 3), 2002
PMID: 12054223

Phylogenetic analysis of the genus Desulfotomaculum: evidence for the misclassification of Desulfotomaculum guttoideum and description of Desulfotomaculum orientis as Desulfosporosinus orientis gen. nov., comb. nov.
Stackebrandt E, Sproer C, Rainey FA, Burghardt J, Pauker O, Hippe H., Int. J. Syst. Bacteriol. 47(4), 1997
PMID: 9336920

Fermented functional foods based on probiotics and their biogenic metabolites.
Stanton C, Ross RP, Fitzgerald GF, Van Sinderen D., Curr. Opin. Biotechnol. 16(2), 2005
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Cloning and sequencing of the hyaluronate lyase gene from Propionibacterium acnes.
Steiner B, Romero-Steiner S, Cruce D, George R., Can. J. Microbiol. 43(4), 1997
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Sebaceous gland lipids.
Stewart ME., Semin Dermatol 11(2), 1992
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Mycobacterium tuberculosis WhiB3 interacts with RpoV to affect host survival but is dispensable for in vivo growth.
Steyn AJ, Collins DM, Hondalus MK, Jacobs WR Jr, Kawakami RP, Bloom BR., Proc. Natl. Acad. Sci. U.S.A. 99(5), 2002
PMID: 11880648

Giant plasmid-encoded polyketide synthases produce the macrolide toxin of Mycobacterium ulcerans.
Stinear TP, Mve-Obiang A, Small PL, Frigui W, Pryor MJ, Brosch R, Jenkin GA, Johnson PD, Davies JK, Lee RE, Adusumilli S, Garnier T, Haydock SF, Leadlay PF, Cole ST., Proc. Natl. Acad. Sci. U.S.A. 101(5), 2004
PMID: 14736915

Identification of novel intergenic repetitive units in a mycobacterial two-component system operon.
Supply P, Magdalena J, Himpens S, Locht C., Mol. Microbiol. 26(5), 1997
PMID: 9426136

Leifsonia gen. nov., a genus for 2,4-diaminobutyric acid-containing actinomycetes to accommodate "Corynebacterium aquaticum" Leifson 1962 and Clavibacter xyli subsp. cynodontis Davis et al. 1984.
Suzuki KI, Suzuki M, Sasaki J, Park YH, Komagata KK., J. Gen. Appl. Microbiol. 45(5), 1999
PMID: 12501368

High-throughput transposon mutagenesis of Corynebacterium glutamicum and construction of a single-gene disruptant mutant library.
Suzuki N, Okai N, Nonaka H, Tsuge Y, Inui M, Yukawa H., Appl. Environ. Microbiol. 72(5), 2006
PMID: 16672528

Large-scale engineering of the Corynebacterium glutamicum genome.
Suzuki N, Okayama S, Nonaka H, Tsuge Y, Inui M, Yukawa H., Appl. Environ. Microbiol. 71(6), 2005
PMID: 15933044

Cre/loxP-mediated deletion system for large genome rearrangements in Corynebacterium glutamicum.
Suzuki N, Tsuge Y, Inui M, Yukawa H., Appl. Microbiol. Biotechnol. 67(2), 2004
PMID: 15834716

Type III pilus of corynebacteria: Pilus length is determined by the level of its major pilin subunit.
Swierczynski A, Ton-That H., J. Bacteriol. 188(17), 2006
PMID: 16923899

A rare leucine codon in adpA is implicated in the morphological defect of bldA mutants of Streptomyces coelicolor.
Takano E, Tao M, Long F, Bibb MJ, Wang L, Li W, Buttner MJ, Bibb MJ, Deng ZX, Chater KF., Mol. Microbiol. 50(2), 2003
PMID: 14617172

50 million years of genomic stasis in endosymbiotic bacteria.
Tamas I, Klasson L, Canback B, Naslund AK, Eriksson AS, Wernegreen JJ, Sandstrom JP, Moran NA, Andersson SG., Science 296(5577), 2002
PMID: 12089438

Mutualists and parasites: how to paint yourself into a (metabolic) corner.
Tamas I, Klasson LM, Sandstrom JP, Andersson SG., FEBS Lett. 498(2-3), 2001
PMID: 11412844

Structural and functional analysis of pTB6 from Bifidobacterium longum.
Tanaka K, Samura K, Kano Y., Biosci. Biotechnol. Biochem. 69(2), 2005
PMID: 15725673

Brasilinolide A, a new macrolide antibiotic produced by Nocardia brasiliensis: producing strain, isolation and biological activity.
Tanaka Y, Komaki H, Yazawa K, Mikami Y, Nemoto A, Tojyo T, Kadowaki K, Shigemori H, Kobayashi J., J. Antibiot. 50(12), 1997
PMID: 9510911

AUTHOR UNKNOWN, 2005

Insights into the genetic organization of the Corynebacterium diphtheriae erythromycin resistance plasmid pNG2 deduced from its complete nucleotide sequence.
Tauch A, Bischoff N, Brune I, Kalinowski J., Plasmid 49(1), 2003
PMID: 12584002

Comparative genomics identified two conserved DNA modules in a corynebacterial plasmid family present in clinical isolates of the opportunistic human pathogen Corynebacterium jeikeium.
Tauch A, Bischoff N, Puhler A, Kalinowski J., Plasmid 52(2), 2004
PMID: 15336488

The 27.8-kb R-plasmid pTET3 from Corynebacterium glutamicum encodes the aminoglycoside adenyltransferase gene cassette aadA9 and the regulated tetracycline efflux system Tet 33 flanked by active copies of the widespread insertion sequence IS6100.
Tauch A, Gotker S, Puhler A, Kalinowski J, Thierbach G., Plasmid 48(2), 2002
PMID: 12383729

Complete genome sequence and analysis of the multiresistant nosocomial pathogen Corynebacterium jeikeium K411, a lipid-requiring bacterium of the human skin flora.
Tauch A, Kaiser O, Hain T, Goesmann A, Weisshaar B, Albersmeier A, Bekel T, Bischoff N, Brune I, Chakraborty T, Kalinowski J, Meyer F, Rupp O, Schneiker S, Viehoever P, Puhler A., J. Bacteriol. 187(13), 2005
PMID: 15968079

The 51,409-bp R-plasmid pTP10 from the multiresistant clinical isolate Corynebacterium striatum M82B is composed of DNA segments initially identified in soil bacteria and in plant, animal, and human pathogens.
Tauch A, Krieft S, Kalinowski J, Puhler A., Mol. Gen. Genet. 263(1), 2000
PMID: 10732668

Plasmids in Corynebacterium glutamicum and their molecular classification by comparative genomics.
Tauch A, Puhler A, Kalinowski J, Thierbach G., J. Biotechnol. 104(1-3), 2003
PMID: 12948627

TetZ, a new tetracycline resistance determinant discovered in gram-positive bacteria, shows high homology to gram-negative regulated efflux systems.
Tauch A, Puhler A, Kalinowski J, Thierbach G., Plasmid 44(3), 2000
PMID: 11078655

Development of a native plasmid as a cloning vector in Clavibacter xyli subsp. cynodontis.
Taylor J, Stearman RS, Uratani BB., Plasmid 29(3), 1993
PMID: 7689234

Analysis of the proteome of Mycobacterium tuberculosis in silico.
Tekaia F, Gordon SV, Garnier T, Brosch R, Barrell BG, Cole ST., Tuber. Lung Dis. 79(6), 1999
PMID: 10694977

The genomic tree as revealed from whole proteome comparisons.
Tekaia F, Lazcano A, Dujon B., Genome Res. 9(6), 1999
PMID: 10400922

AUTHOR UNKNOWN, 1998

Sortases and pilin elements involved in pilus assembly of Corynebacterium diphtheriae.
Ton-That H, Marraffini LA, Schneewind O., Mol. Microbiol. 53(1), 2004
PMID: 15225319

Assembly of pili on the surface of Corynebacterium diphtheriae.
Ton-That H, Schneewind O., Mol. Microbiol. 50(4), 2003
PMID: 14622427

Use of polymerase chain reaction to identify a leucyl tRNA in Streptomyces coelicolor.
Trepanier NK, Nguyen GD, Leedell PJ, Leskiw BK., Gene 193(1), 1997
PMID: 9249067

Functional and evolutionary genomics of Mycobacterium tuberculosis: insights from genomic deletions in 100 strains.
Tsolaki AG, Hirsh AE, DeRiemer K, Enciso JA, Wong MZ, Hannan M, Goguet de la Salmoniere YO, Aman K, Kato-Maeda M, Small PM., Proc. Natl. Acad. Sci. U.S.A. 101(14), 2004
PMID: 15024109

Screening method for microorganisms accumulating metabolites and its use in the isolation of Micrococcus glutamicus.
UDAKA S., J. Bacteriol. 79(), 1960
PMID: 13840150

Two distinct mechanisms cause heterogeneity of 16S rRNA.
Ueda K, Seki T, Kudo T, Yoshida T, Kataoka M., J. Bacteriol. 181(1), 1999
PMID: 9864315

An outbreak involving extensive transmission of a virulent strain of Mycobacterium tuberculosis.
Valway SE, Sanchez MP, Shinnick TF, Orme I, Agerton T, Hoy D, Jones JS, Westmoreland H, Onorato IM., N. Engl. J. Med. 338(10), 1998
PMID: 9486991

The automatic detection of homologous regions (ADHoRe) and its application to microcolinearity between Arabidopsis and rice.
Vandepoele K, Saeys Y, Simillion C, Raes J, Van De Peer Y., Genome Res. 12(11), 2002
PMID: 12421767

Mycobacterium ulcerans infection.
van der Werf TS, van der Graaf WT, Tappero JW, Asiedu K., Lancet 354(9183), 1999
PMID: 10501380

Complete genomic nucleotide sequence and analysis of the temperate bacteriophage VWB.
Van Dessel W, Van Mellaert L, Liesegang H, Raasch C, De Keersmaeker S, Geukens N, Lammertyn E, Streit W, Anne J., Virology 331(2), 2005
PMID: 15629775

Strain identification of Mycobacterium tuberculosis by DNA fingerprinting: recommendations for a standardized methodology.
van Embden JD, Cave MD, Crawford JT, Dale JW, Eisenach KD, Gicquel B, Hermans P, Martin C, McAdam R, Shinnick TM., J. Clin. Microbiol. 31(2), 1993
PMID: 8381814

Evolution and expansion of the Mycobacterium tuberculosis PE and PPE multigene families and their association with the duplication of the ESAT-6 (esx) gene cluster regions.
Gey van Pittius NC, Sampson SL, Lee H, Kim Y, van Helden PD, Warren RM., BMC Evol. Biol. 6(), 2006
PMID: 17105670

Diversity, vitality and activities of intestinal lactic acid bacteria and bifidobacteria assessed by molecular approaches.
Vaughan EE, Heilig HG, Ben-Amor K, de Vos WM., FEMS Microbiol. Rev. 29(3), 2005
PMID: 16125009

Analysis of bifidobacterial evolution using a multilocus approach.
Ventura M, Canchaya C, Del Casale A, Dellaglio F, Neviani E, Fitzgerald GF, van Sinderen D., Int. J. Syst. Evol. Microbiol. 56(Pt 12), 2006
PMID: 17158978

Genomics as a means to understand bacterial phylogeny and ecological adaptation: the case of bifidobacteria.
Ventura M, Canchaya C, Fitzgerald GF, Gupta RS, van Sinderen D., Antonie Van Leeuwenhoek 91(4), 2006
PMID: 17072531

Analysis, characterization, and loci of the tuf genes in lactobacillus and bifidobacterium species and their direct application for species identification.
Ventura M, Canchaya C, Meylan V, Klaenhammer TR, Zink R., Appl. Environ. Microbiol. 69(11), 2003
PMID: 14602655

Bifidobacterium lactis DSM 10140: identification of the atp (atpBEFHAGDC) operon and analysis of its genetic structure, characteristics, and phylogeny.
Ventura M, Canchaya C, van Sinderen D, Fitzgerald GF, Zink R., Appl. Environ. Microbiol. 70(5), 2004
PMID: 15128574

How high G+C Gram-positive bacteria and in particular bifidobacteria cope with heat stress: protein players and regulators.
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