A combined proteome and transcriptome analysis of developing Medicago truncatula seeds
Gallardo K, Firnhaber C, Zuber H, Hericher D, Belghazi M, Henry C, Kuester H, Thompson R (2007)
MOLECULAR & CELLULAR PROTEOMICS 6(12): 2165-2179.
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Autor*in
Gallardo, Karine;
Firnhaber, Christian;
Zuber, Helene;
Hericher, Delphine;
Belghazi, Maya;
Henry, Celine;
Kuester, Helge;
Thompson, Richard
Abstract / Bemerkung
A comparative study of proteome and transcriptome changes during Medicago truncatula ( cultivar Jemalong) seed development has been carried out. Transcript and protein profiles were parallel across the time course for 50% of the comparisons made, but divergent patterns were also observed, indicative of post-transcriptional events. These data, combined with the analysis of transcript and protein distribution in the isolated seed coat, endosperm, and embryo, demonstrated the major contribution made to the embryo by the surrounding tissues. First, a remarkable compartmentalization of enzymes involved in methionine biosynthesis between the seed tissues was revealed that may regulate the availability of sulfur-containing amino acids for embryo protein synthesis during seed filling. This intertissue compartmentalization, which was also apparent for enzymes of sulfur assimilation, is relevant to strategies for modifying the nutritional value of legume seeds. Second, decreasing levels during seed filling of seed coat and endosperm metabolic enzymes, including essential steps in Met metabolism, are indicative of a metabolic shift from a highly active to a quiescent state as the embryo assimilates nutrients. Third, a concomitant persistence of several proteases in seed coat and endosperm highlighted the importance of proteolysis in these tissues as a supplementary source of amino acids for protein synthesis in the embryo. Finally, the data revealed the sites of expression within the seed of a large number of transporters implied in nutrient import and intraseed translocations. Several of these, including a sulfate transporter, were preferentially expressed in seeds compared with other plant organs. These findings provide new directions for genetic improvement of grain legumes.
Erscheinungsjahr
2007
Zeitschriftentitel
MOLECULAR & CELLULAR PROTEOMICS
Band
6
Ausgabe
12
Seite(n)
2165-2179
ISSN
1535-9476
eISSN
1535-9484
Page URI
https://pub.uni-bielefeld.de/record/1631033
Zitieren
Gallardo K, Firnhaber C, Zuber H, et al. A combined proteome and transcriptome analysis of developing Medicago truncatula seeds. MOLECULAR & CELLULAR PROTEOMICS. 2007;6(12):2165-2179.
Gallardo, K., Firnhaber, C., Zuber, H., Hericher, D., Belghazi, M., Henry, C., Kuester, H., et al. (2007). A combined proteome and transcriptome analysis of developing Medicago truncatula seeds. MOLECULAR & CELLULAR PROTEOMICS, 6(12), 2165-2179. https://doi.org/10.1074/mcp.M700171-MCP200
Gallardo, Karine, Firnhaber, Christian, Zuber, Helene, Hericher, Delphine, Belghazi, Maya, Henry, Celine, Kuester, Helge, and Thompson, Richard. 2007. “A combined proteome and transcriptome analysis of developing Medicago truncatula seeds”. MOLECULAR & CELLULAR PROTEOMICS 6 (12): 2165-2179.
Gallardo, K., Firnhaber, C., Zuber, H., Hericher, D., Belghazi, M., Henry, C., Kuester, H., and Thompson, R. (2007). A combined proteome and transcriptome analysis of developing Medicago truncatula seeds. MOLECULAR & CELLULAR PROTEOMICS 6, 2165-2179.
Gallardo, K., et al., 2007. A combined proteome and transcriptome analysis of developing Medicago truncatula seeds. MOLECULAR & CELLULAR PROTEOMICS, 6(12), p 2165-2179.
K. Gallardo, et al., “A combined proteome and transcriptome analysis of developing Medicago truncatula seeds”, MOLECULAR & CELLULAR PROTEOMICS, vol. 6, 2007, pp. 2165-2179.
Gallardo, K., Firnhaber, C., Zuber, H., Hericher, D., Belghazi, M., Henry, C., Kuester, H., Thompson, R.: A combined proteome and transcriptome analysis of developing Medicago truncatula seeds. MOLECULAR & CELLULAR PROTEOMICS. 6, 2165-2179 (2007).
Gallardo, Karine, Firnhaber, Christian, Zuber, Helene, Hericher, Delphine, Belghazi, Maya, Henry, Celine, Kuester, Helge, and Thompson, Richard. “A combined proteome and transcriptome analysis of developing Medicago truncatula seeds”. MOLECULAR & CELLULAR PROTEOMICS 6.12 (2007): 2165-2179.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
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E-MEXP-904 (ARXPR: E-MEXP-904)
Bibliography accession: E-MEXP-904 - Transcription profiling of Medicago truncatula seed coats and endosperm compared to embryos
Bibliography accession: E-MEXP-904 - Transcription profiling of Medicago truncatula seed coats and endosperm compared to embryos
E-MEXP-907 (ARXPR: E-MEXP-907)
Bibliography accession: E-MEXP-907 - Transcription profiling of Medicago truncatula seeds at 14, 16, 20, 24, and 36 days post pollination
Bibliography accession: E-MEXP-907 - Transcription profiling of Medicago truncatula seeds at 14, 16, 20, 24, and 36 days post pollination
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Verdier J, Lalanne D, Pelletier S, Torres-Jerez I, Righetti K, Bandyopadhyay K, Leprince O, Chatelain E, Vu BL, Gouzy J, Gamas P, Udvardi MK, Buitink J., Plant Physiol 163(2), 2013
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Verdier J, Lalanne D, Pelletier S, Torres-Jerez I, Righetti K, Bandyopadhyay K, Leprince O, Chatelain E, Vu BL, Gouzy J, Gamas P, Udvardi MK, Buitink J., Plant Physiol 163(2), 2013
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Legume adaptation to sulfur deficiency revealed by comparing nutrient allocation and seed traits in Medicago truncatula.
Zuber H, Poignavent G, Le Signor C, Aimé D, Vieren E, Tadla C, Lugan R, Belghazi M, Labas V, Santoni AL, Wipf D, Buitink J, Avice JC, Salon C, Gallardo K., Plant J 76(6), 2013
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Zuber H, Poignavent G, Le Signor C, Aimé D, Vieren E, Tadla C, Lugan R, Belghazi M, Labas V, Santoni AL, Wipf D, Buitink J, Avice JC, Salon C, Gallardo K., Plant J 76(6), 2013
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Expression changes of ribosomal proteins in phosphate- and iron-deficient Arabidopsis roots predict stress-specific alterations in ribosome composition.
Wang J, Lan P, Gao H, Zheng L, Li W, Schmidt W., BMC Genomics 14(), 2013
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Wang J, Lan P, Gao H, Zheng L, Li W, Schmidt W., BMC Genomics 14(), 2013
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Tobacco seeds expressing feedback-insensitive cystathionine gamma-synthase exhibit elevated content of methionine and altered primary metabolic profile.
Matityahu I, Godo I, Hacham Y, Amir R., BMC Plant Biol 13(), 2013
PMID: 24314105
Matityahu I, Godo I, Hacham Y, Amir R., BMC Plant Biol 13(), 2013
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Proteomic analysis of embryo development in rice (Oryza sativa).
Xu H, Zhang W, Gao Y, Zhao Y, Guo L, Wang J., Planta 235(4), 2012
PMID: 22015996
Xu H, Zhang W, Gao Y, Zhao Y, Guo L, Wang J., Planta 235(4), 2012
PMID: 22015996
Seed germination and vigor.
Rajjou L, Duval M, Gallardo K, Catusse J, Bally J, Job C, Job D., Annu Rev Plant Biol 63(), 2012
PMID: 22136565
Rajjou L, Duval M, Gallardo K, Catusse J, Bally J, Job C, Job D., Annu Rev Plant Biol 63(), 2012
PMID: 22136565
Seed biology in the 21st century: perspectives and new directions.
Nambara E, Nonogaki H., Plant Cell Physiol 53(1), 2012
PMID: 22241887
Nambara E, Nonogaki H., Plant Cell Physiol 53(1), 2012
PMID: 22241887
Bioengineering approaches to improve the nutritional values of seeds by increasing their methionine content
Amir R, Han T, Ma F., Mol Breed 29(4), 2012
PMID: IND44807828
Amir R, Han T, Ma F., Mol Breed 29(4), 2012
PMID: IND44807828
Faba bean genomics: current status and future prospects
Alghamdi SS, Migdadi HM, Ammar MH, Paull JG, Siddique KHM., Euphytica 186(3), 2012
PMID: IND44739160
Alghamdi SS, Migdadi HM, Ammar MH, Paull JG, Siddique KHM., Euphytica 186(3), 2012
PMID: IND44739160
The seed nuclear proteome.
Repetto O, Rogniaux H, Larré C, Thompson R, Gallardo K., Front Plant Sci 3(), 2012
PMID: 23267364
Repetto O, Rogniaux H, Larré C, Thompson R, Gallardo K., Front Plant Sci 3(), 2012
PMID: 23267364
Using proteomics to study sexual reproduction in angiosperms.
Miernyk JA, Preťová A, Olmedilla A, Klubicová K, Obert B, Hajduch M., Sex Plant Reprod 24(1), 2011
PMID: 20830489
Miernyk JA, Preťová A, Olmedilla A, Klubicová K, Obert B, Hajduch M., Sex Plant Reprod 24(1), 2011
PMID: 20830489
Agricultural recovery of a formerly radioactive area: I. Establishment of high-resolution quantitative protein map of mature flax seeds harvested from the remediated Chernobyl area.
Klubicová K, Berčák M, Danchenko M, Skultety L, Rashydov NM, Berezhna VV, Miernyk JA, Hajduch M., Phytochemistry 72(10), 2011
PMID: 21144539
Klubicová K, Berčák M, Danchenko M, Skultety L, Rashydov NM, Berezhna VV, Miernyk JA, Hajduch M., Phytochemistry 72(10), 2011
PMID: 21144539
iTRAQ protein profile analysis of Arabidopsis roots reveals new aspects critical for iron homeostasis.
Lan P, Li W, Wen TN, Shiau JY, Wu YC, Lin W, Schmidt W., Plant Physiol 155(2), 2011
PMID: 21173025
Lan P, Li W, Wen TN, Shiau JY, Wu YC, Lin W, Schmidt W., Plant Physiol 155(2), 2011
PMID: 21173025
Using proteomics to study sexual reproduction in angiosperms
Miernyk JánA, Preová Anna, Olmedilla Adela, Klubicová Katarína, Obert Bohuš, Hajduch Martin., Sex Plant Reprod 24(1), 2011
PMID: IND44496202
Miernyk JánA, Preová Anna, Olmedilla Adela, Klubicová Katarína, Obert Bohuš, Hajduch Martin., Sex Plant Reprod 24(1), 2011
PMID: IND44496202
Reboot the system thanks to protein post-translational modifications and proteome diversity: How quiescent seeds restart their metabolism to prepare seedling establishment.
Arc E, Galland M, Cueff G, Godin B, Lounifi I, Job D, Rajjou L., Proteomics 11(9), 2011
PMID: 21433284
Arc E, Galland M, Cueff G, Godin B, Lounifi I, Job D, Rajjou L., Proteomics 11(9), 2011
PMID: 21433284
A PQL (protein quantity loci) analysis of mature pea seed proteins identifies loci determining seed protein composition.
Bourgeois M, Jacquin F, Cassecuelle F, Savois V, Belghazi M, Aubert G, Quillien L, Huart M, Marget P, Burstin J., Proteomics 11(9), 2011
PMID: 21433288
Bourgeois M, Jacquin F, Cassecuelle F, Savois V, Belghazi M, Aubert G, Quillien L, Huart M, Marget P, Burstin J., Proteomics 11(9), 2011
PMID: 21433288
iTRAQ-based analysis of changes in the cassava root proteome reveals pathways associated with post-harvest physiological deterioration.
Owiti J, Grossmann J, Gehrig P, Dessimoz C, Laloi C, Hansen MB, Gruissem W, Vanderschuren H., Plant J 67(1), 2011
PMID: 21435052
Owiti J, Grossmann J, Gehrig P, Dessimoz C, Laloi C, Hansen MB, Gruissem W, Vanderschuren H., Plant J 67(1), 2011
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Analysis of gene expression patterns during seed coat development in Arabidopsis.
Dean G, Cao Y, Xiang D, Provart NJ, Ramsay L, Ahad A, White R, Selvaraj G, Datla R, Haughn G., Mol Plant 4(6), 2011
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Dean G, Cao Y, Xiang D, Provart NJ, Ramsay L, Ahad A, White R, Selvaraj G, Datla R, Haughn G., Mol Plant 4(6), 2011
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Cofactome analyses reveal enhanced flux of carbon into oil for potential biofuel production.
Hayden DM, Rolletschek H, Borisjuk L, Corwin J, Kliebenstein DJ, Grimberg A, Stymne S, Dehesh K., Plant J 67(6), 2011
PMID: 21615570
Hayden DM, Rolletschek H, Borisjuk L, Corwin J, Kliebenstein DJ, Grimberg A, Stymne S, Dehesh K., Plant J 67(6), 2011
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The MtSNF4b subunit of the sucrose non-fermenting-related kinase complex connects after-ripening and constitutive defense responses in seeds of Medicago truncatula.
Bolingue W, Rosnoblet C, Leprince O, Vu BL, Aubry C, Buitink J., Plant J 61(5), 2010
PMID: 20015062
Bolingue W, Rosnoblet C, Leprince O, Vu BL, Aubry C, Buitink J., Plant J 61(5), 2010
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Model legumes contribute to faba bean breeding
Rispail Nicolas, Kaló Péter, Kiss GyörgyB, Ellis THNoel, Gallardo Karine, Thompson RichardD, Prats Elena, Larrainzar Estibaliz, Ladrera Ruben, González EstherM, Arrese-Igor Cesar, Ferguson BrettJ, Gresshoff PeterM, Rubiales Diego., Field Crops Res 115(3), 2010
PMID: IND44316555
Rispail Nicolas, Kaló Péter, Kiss GyörgyB, Ellis THNoel, Gallardo Karine, Thompson RichardD, Prats Elena, Larrainzar Estibaliz, Ladrera Ruben, González EstherM, Arrese-Igor Cesar, Ferguson BrettJ, Gresshoff PeterM, Rubiales Diego., Field Crops Res 115(3), 2010
PMID: IND44316555
Flux of transcript patterns during soybean seed development.
Jones SI, Gonzalez DO, Vodkin LO., BMC Genomics 11(), 2010
PMID: 20181280
Jones SI, Gonzalez DO, Vodkin LO., BMC Genomics 11(), 2010
PMID: 20181280
Complementary genetic and genomic approaches help characterize the linkage group I seed protein QTL in soybean.
Bolon YT, Joseph B, Cannon SB, Graham MA, Diers BW, Farmer AD, May GD, Muehlbauer GJ, Specht JE, Tu ZJ, Weeks N, Xu WW, Shoemaker RC, Vance CP., BMC Plant Biol 10(), 2010
PMID: 20199683
Bolon YT, Joseph B, Cannon SB, Graham MA, Diers BW, Farmer AD, May GD, Muehlbauer GJ, Specht JE, Tu ZJ, Weeks N, Xu WW, Shoemaker RC, Vance CP., BMC Plant Biol 10(), 2010
PMID: 20199683
Proteomic approach to analyze dormancy breaking of tree seeds.
Pawłowski TA., Plant Mol Biol 73(1-2), 2010
PMID: 20306286
Pawłowski TA., Plant Mol Biol 73(1-2), 2010
PMID: 20306286
Seed desiccation: a bridge between maturation and germination.
Angelovici R, Galili G, Fernie AR, Fait A., Trends Plant Sci 15(4), 2010
PMID: 20138563
Angelovici R, Galili G, Fernie AR, Fait A., Trends Plant Sci 15(4), 2010
PMID: 20138563
Proteome profiling of early seed development in Cunninghamia lanceolata (Lamb.) Hook.
Shi J, Zhen Y, Zheng RH., J Exp Bot 61(9), 2010
PMID: 20363864
Shi J, Zhen Y, Zheng RH., J Exp Bot 61(9), 2010
PMID: 20363864
Sultr4;1 mutant seeds of Arabidopsis have an enhanced sulphate content and modified proteome suggesting metabolic adaptations to altered sulphate compartmentalization.
Zuber H, Davidian JC, Wirtz M, Hell R, Belghazi M, Thompson R, Gallardo K., BMC Plant Biol 10(), 2010
PMID: 20426829
Zuber H, Davidian JC, Wirtz M, Hell R, Belghazi M, Thompson R, Gallardo K., BMC Plant Biol 10(), 2010
PMID: 20426829
The seed composition of Arabidopsis mutants for the group 3 sulfate transporters indicates a role in sulfate translocation within developing seeds.
Zuber H, Davidian JC, Aubert G, Aimé D, Belghazi M, Lugan R, Heintz D, Wirtz M, Hell R, Thompson R, Gallardo K., Plant Physiol 154(2), 2010
PMID: 20702726
Zuber H, Davidian JC, Aubert G, Aimé D, Belghazi M, Lugan R, Heintz D, Wirtz M, Hell R, Thompson R, Gallardo K., Plant Physiol 154(2), 2010
PMID: 20702726
Medicago truncatula contains a second gene encoding a plastid located glutamine synthetase exclusively expressed in developing seeds.
Seabra AR, Vieira CP, Cullimore JV, Carvalho HG., BMC Plant Biol 10(), 2010
PMID: 20723225
Seabra AR, Vieira CP, Cullimore JV, Carvalho HG., BMC Plant Biol 10(), 2010
PMID: 20723225
Zebrafish fin immune responses during high mortality infections with viral haemorrhagic septicemia rhabdovirus. A proteomic and transcriptomic approach.
Encinas P, Rodriguez-Milla MA, Novoa B, Estepa A, Figueras A, Coll J., BMC Genomics 11(), 2010
PMID: 20875106
Encinas P, Rodriguez-Milla MA, Novoa B, Estepa A, Figueras A, Coll J., BMC Genomics 11(), 2010
PMID: 20875106
Increased phloem transport of S-methylmethionine positively affects sulfur and nitrogen metabolism and seed development in pea plants.
Tan Q, Zhang L, Grant J, Cooper P, Tegeder M., Plant Physiol 154(4), 2010
PMID: 20923886
Tan Q, Zhang L, Grant J, Cooper P, Tegeder M., Plant Physiol 154(4), 2010
PMID: 20923886
On the mechanisms of cadmium stress alleviation in Medicago truncatula by arbuscular mycorrhizal symbiosis: a root proteomic study.
Aloui A, Recorbet G, Gollotte A, Robert F, Valot B, Gianinazzi-Pearson V, Aschi-Smiti S, Dumas-Gaudot E., Proteomics 9(2), 2009
PMID: 19072729
Aloui A, Recorbet G, Gollotte A, Robert F, Valot B, Gianinazzi-Pearson V, Aschi-Smiti S, Dumas-Gaudot E., Proteomics 9(2), 2009
PMID: 19072729
The proteome of seed development in the model legume Lotus japonicus.
Dam S, Laursen BS, Ornfelt JH, Jochimsen B, Staerfeldt HH, Friis C, Nielsen K, Goffard N, Besenbacher S, Krusell L, Sato S, Tabata S, Thøgersen IB, Enghild JJ, Stougaard J., Plant Physiol 149(3), 2009
PMID: 19129418
Dam S, Laursen BS, Ornfelt JH, Jochimsen B, Staerfeldt HH, Friis C, Nielsen K, Goffard N, Besenbacher S, Krusell L, Sato S, Tabata S, Thøgersen IB, Enghild JJ, Stougaard J., Plant Physiol 149(3), 2009
PMID: 19129418
Translating Medicago truncatula genomics to crop legumes.
Young ND, Udvardi M., Curr Opin Plant Biol 12(2), 2009
PMID: 19162532
Young ND, Udvardi M., Curr Opin Plant Biol 12(2), 2009
PMID: 19162532
Metabolic pathways in tropical dicotyledonous albuminous seeds: Coffea arabica as a case study.
Joët T, Laffargue A, Salmona J, Doulbeau S, Descroix F, Bertrand B, de Kochko A, Dussert S., New Phytol 182(1), 2009
PMID: 19207685
Joët T, Laffargue A, Salmona J, Doulbeau S, Descroix F, Bertrand B, de Kochko A, Dussert S., New Phytol 182(1), 2009
PMID: 19207685
Plant phosphoproteomics: an update.
Kersten B, Agrawal GK, Durek P, Neigenfind J, Schulze W, Walther D, Rakwal R., Proteomics 9(4), 2009
PMID: 19212952
Kersten B, Agrawal GK, Durek P, Neigenfind J, Schulze W, Walther D, Rakwal R., Proteomics 9(4), 2009
PMID: 19212952
TRUNCATULIX--a data warehouse for the legume community.
Henckel K, Runte KJ, Bekel T, Dondrup M, Jakobi T, Küster H, Goesmann A., BMC Plant Biol 9(), 2009
PMID: 19210766
Henckel K, Runte KJ, Bekel T, Dondrup M, Jakobi T, Küster H, Goesmann A., BMC Plant Biol 9(), 2009
PMID: 19210766
System analysis of an Arabidopsis mutant altered in de novo fatty acid synthesis reveals diverse changes in seed composition and metabolism.
Chen M, Mooney BP, Hajduch M, Joshi T, Zhou M, Xu D, Thelen JJ., Plant Physiol 150(1), 2009
PMID: 19279196
Chen M, Mooney BP, Hajduch M, Joshi T, Zhou M, Xu D, Thelen JJ., Plant Physiol 150(1), 2009
PMID: 19279196
Plant proteomics update (2007-2008): Second-generation proteomic techniques, an appropriate experimental design, and data analysis to fulfill MIAPE standards, increase plant proteome coverage and expand biological knowledge.
Jorrín-Novo JV, Maldonado AM, Echevarría-Zomeño S, Valledor L, Castillejo MA, Curto M, Valero J, Sghaier B, Donoso G, Redondo I., J Proteomics 72(3), 2009
PMID: 19367730
Jorrín-Novo JV, Maldonado AM, Echevarría-Zomeño S, Valledor L, Castillejo MA, Curto M, Valero J, Sghaier B, Donoso G, Redondo I., J Proteomics 72(3), 2009
PMID: 19367730
Proteomic analysis of the development and germination of date palm (Phoenix dactylifera L.) zygotic embryos.
Sghaier-Hammami B, Valledor L, Drira N, Jorrin-Novo JV., Proteomics 9(9), 2009
PMID: 19402047
Sghaier-Hammami B, Valledor L, Drira N, Jorrin-Novo JV., Proteomics 9(9), 2009
PMID: 19402047
Proteome analysis of Norway maple (Acer platanoides L.) seeds dormancy breaking and germination: influence of abscisic and gibberellic acids.
Pawłowski TA., BMC Plant Biol 9(), 2009
PMID: 19413897
Pawłowski TA., BMC Plant Biol 9(), 2009
PMID: 19413897
A combined 15N tracing/proteomics study in Brassica napus reveals the chronology of proteomics events associated with N remobilisation during leaf senescence induced by nitrate limitation or starvation.
Desclos M, Etienne P, Coquet L, Jouenne T, Bonnefoy J, Segura R, Reze S, Ourry A, Avice JC., Proteomics 9(13), 2009
PMID: 19609964
Desclos M, Etienne P, Coquet L, Jouenne T, Bonnefoy J, Segura R, Reze S, Ourry A, Avice JC., Proteomics 9(13), 2009
PMID: 19609964
Comparative 2-DE proteomic analysis of date palm (Phoenix dactylifera L.) somatic and zygotic embryos.
Sghaier-Hammami B, Drira N, Jorrín-Novo JV., J Proteomics 73(1), 2009
PMID: 19619682
Sghaier-Hammami B, Drira N, Jorrín-Novo JV., J Proteomics 73(1), 2009
PMID: 19619682
Analysis of post-transcriptional regulations by a functional, integrated, and quantitative method.
Laloo B, Simon D, Veillat V, Lauzel D, Guyonnet-Duperat V, Moreau-Gaudry F, Sagliocco F, Grosset C., Mol Cell Proteomics 8(8), 2009
PMID: 19411282
Laloo B, Simon D, Veillat V, Lauzel D, Guyonnet-Duperat V, Moreau-Gaudry F, Sagliocco F, Grosset C., Mol Cell Proteomics 8(8), 2009
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Post-genomics studies of developmental processes in legume seeds.
Thompson R, Burstin J, Gallardo K., Plant Physiol 151(3), 2009
PMID: 19675147
Thompson R, Burstin J, Gallardo K., Plant Physiol 151(3), 2009
PMID: 19675147
Quantitative proteomics of seed filling in castor: comparison with soybean and rapeseed reveals differences between photosynthetic and nonphotosynthetic seed metabolism.
Houston NL, Hajduch M, Thelen JJ., Plant Physiol 151(2), 2009
PMID: 19675154
Houston NL, Hajduch M, Thelen JJ., Plant Physiol 151(2), 2009
PMID: 19675154
The metabolic role of the legume endosperm: a noninvasive imaging study.
Melkus G, Rolletschek H, Radchuk R, Fuchs J, Rutten T, Wobus U, Altmann T, Jakob P, Borisjuk L., Plant Physiol 151(3), 2009
PMID: 19748915
Melkus G, Rolletschek H, Radchuk R, Fuchs J, Rutten T, Wobus U, Altmann T, Jakob P, Borisjuk L., Plant Physiol 151(3), 2009
PMID: 19748915
Low oxygen levels as a trigger for enhancement of respiratory metabolism in Saccharomyces cerevisiae.
Rintala E, Toivari M, Pitkänen JP, Wiebe MG, Ruohonen L, Penttilä M., BMC Genomics 10(), 2009
PMID: 19804647
Rintala E, Toivari M, Pitkänen JP, Wiebe MG, Ruohonen L, Penttilä M., BMC Genomics 10(), 2009
PMID: 19804647
Comparative analyses of the proteomes of leaves and flowers at various stages of development reveal organ-specific functional differentiation of proteins in soybean.
Ahsan N, Komatsu S., Proteomics 9(21), 2009
PMID: 19862761
Ahsan N, Komatsu S., Proteomics 9(21), 2009
PMID: 19862761
Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics.
Baerenfaller K, Grossmann J, Grobei MA, Hull R, Hirsch-Hoffmann M, Yalovsky S, Zimmermann P, Grossniklaus U, Gruissem W, Baginsky S., Science 320(5878), 2008
PMID: 18436743
Baerenfaller K, Grossmann J, Grobei MA, Hull R, Hirsch-Hoffmann M, Yalovsky S, Zimmermann P, Grossniklaus U, Gruissem W, Baginsky S., Science 320(5878), 2008
PMID: 18436743
Gene expression profiling of M. truncatula transcription factors identifies putative regulators of grain legume seed filling.
Verdier J, Kakar K, Gallardo K, Le Signor C, Aubert G, Schlereth A, Town CD, Udvardi MK, Thompson RD., Plant Mol Biol 67(6), 2008
PMID: 18528765
Verdier J, Kakar K, Gallardo K, Le Signor C, Aubert G, Schlereth A, Town CD, Udvardi MK, Thompson RD., Plant Mol Biol 67(6), 2008
PMID: 18528765
In-depth investigation of the soybean seed-filling proteome and comparison with a parallel study of rapeseed.
Agrawal GK, Hajduch M, Graham K, Thelen JJ., Plant Physiol 148(1), 2008
PMID: 18599654
Agrawal GK, Hajduch M, Graham K, Thelen JJ., Plant Physiol 148(1), 2008
PMID: 18599654
Exploring the nuclear proteome of Medicago truncatula at the switch towards seed filling.
Repetto O, Rogniaux H, Firnhaber C, Zuber H, Küster H, Larré C, Thompson R, Gallardo K., Plant J 56(3), 2008
PMID: 18643982
Repetto O, Rogniaux H, Firnhaber C, Zuber H, Küster H, Larré C, Thompson R, Gallardo K., Plant J 56(3), 2008
PMID: 18643982
Proteome-wide characterization of sugarbeet seed vigor and its tissue specific expression.
Catusse J, Strub JM, Job C, Van Dorsselaer A, Job D., Proc Natl Acad Sci U S A 105(29), 2008
PMID: 18635686
Catusse J, Strub JM, Job C, Van Dorsselaer A, Job D., Proc Natl Acad Sci U S A 105(29), 2008
PMID: 18635686
Transcriptional regulation of storage protein synthesis during dicotyledon seed filling.
Verdier J, Thompson RD., Plant Cell Physiol 49(9), 2008
PMID: 18701524
Verdier J, Thompson RD., Plant Cell Physiol 49(9), 2008
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Reserve accumulation in legume seeds.
Gallardo K, Thompson R, Burstin J., C R Biol 331(10), 2008
PMID: 18926489
Gallardo K, Thompson R, Burstin J., C R Biol 331(10), 2008
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Transcriptome- and proteome-wide analyses of seed germination.
Catusse J, Job C, Job D., C R Biol 331(10), 2008
PMID: 18926496
Catusse J, Job C, Job D., C R Biol 331(10), 2008
PMID: 18926496
Transcript profiles uncover temporal and stress-induced changes of metabolic pathways in germinating sugar beet seeds.
Pestsova E, Meinhard J, Menze A, Fischer U, Windhövel A, Westhoff P., BMC Plant Biol 8(), 2008
PMID: 19046420
Pestsova E, Meinhard J, Menze A, Fischer U, Windhövel A, Westhoff P., BMC Plant Biol 8(), 2008
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Zhang H, Sreenivasulu N, Weschke W, Stein N, Rudd S, Radchuk V, Potokina E, Scholz U, Schweizer P, Zierold U, Langridge P, Varshney RK, Wobus U, Graner A., Plant J. 40(2), 2004
PMID: 15447653
Systematic spatial analysis of gene expression during wheat caryopsis development.
Drea S, Leader DJ, Arnold BC, Shaw P, Dolan L, Doonan JH., Plant Cell 17(8), 2005
PMID: 16006577
Drea S, Leader DJ, Arnold BC, Shaw P, Dolan L, Doonan JH., Plant Cell 17(8), 2005
PMID: 16006577
Timing of the maternal-to-zygotic transition during early seed development in maize.
Grimanelli D, Perotti E, Ramirez J, Leblanc O., Plant Cell 17(4), 2005
PMID: 15749756
Grimanelli D, Perotti E, Ramirez J, Leblanc O., Plant Cell 17(4), 2005
PMID: 15749756
Developmental analysis of maize endosperm proteome suggests a pivotal role for pyruvate orthophosphate dikinase.
Mechin V, Thevenot C, Le Guilloux M, Prioul JL, Damerval C., Plant Physiol. 143(3), 2007
PMID: 17237188
Mechin V, Thevenot C, Le Guilloux M, Prioul JL, Damerval C., Plant Physiol. 143(3), 2007
PMID: 17237188
AUTHOR UNKNOWN, accharomyces cerevisiae. 18(), 2001
AUTHOR UNKNOWN, Saccharomyces cerevisiae 4(), 2005
AUTHOR UNKNOWN, Methanosarcina acetivorans 6(), 2007
AUTHOR UNKNOWN, Staphylococcus aureus 6(), 2006
AUTHOR UNKNOWN, Cell Cycle 5(), 2006
The heterogeneity of human mesenchymal stem cell preparations--evidence from simultaneous analysis of proteomes and transcriptomes.
Wagner W, Feldmann RE Jr, Seckinger A, Maurer MH, Wein F, Blake J, Krause U, Kalenka A, Burgers HF, Saffrich R, Wuchter P, Kuschinsky W, Ho AD., Exp. Hematol. 34(4), 2006
PMID: 16569600
Wagner W, Feldmann RE Jr, Seckinger A, Maurer MH, Wein F, Blake J, Krause U, Kalenka A, Burgers HF, Saffrich R, Wuchter P, Kuschinsky W, Ho AD., Exp. Hematol. 34(4), 2006
PMID: 16569600
AUTHOR UNKNOWN, Arabidopsis thaliana. 5(), 2005
Using quantitative proteomics of Arabidopsis roots and leaves to predict metabolic activity
Mooney BP, Miernyk JA, Michael Greenlief C, Thelen JJ., Physiol Plant 128(2), 2006
PMID: IND43835964
Mooney BP, Miernyk JA, Michael Greenlief C, Thelen JJ., Physiol Plant 128(2), 2006
PMID: IND43835964
Estimating genome conservation between crop and model legume species.
Choi HK, Mun JH, Kim DJ, Zhu H, Baek JM, Mudge J, Roe B, Ellis N, Doyle J, Kiss GB, Young ND, Cook DR., Proc. Natl. Acad. Sci. U.S.A. 101(43), 2004
PMID: 15489274
Choi HK, Mun JH, Kim DJ, Zhu H, Baek JM, Mudge J, Roe B, Ellis N, Doyle J, Kiss GB, Young ND, Cook DR., Proc. Natl. Acad. Sci. U.S.A. 101(43), 2004
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AUTHOR UNKNOWN, Medicago truncatula 43(), 2005
Proteome analysis of embryo and endosperm from germinating tomato seeds.
Sheoran IS, Olson DJ, Ross AR, Sawhney VK., Proteomics 5(14), 2005
PMID: 16097031
Sheoran IS, Olson DJ, Ross AR, Sawhney VK., Proteomics 5(14), 2005
PMID: 16097031
Identification of genes specifically expressed in maternal and filial tissues of barley caryopses: a cDNA array analysis.
Sreenivasulu N, Altschmied L, Panitz R, Hahnel U, Michalek W, Weschke W, Wobus U., Mol. Genet. Genomics 266(5), 2001
PMID: 11810249
Sreenivasulu N, Altschmied L, Panitz R, Hahnel U, Michalek W, Weschke W, Wobus U., Mol. Genet. Genomics 266(5), 2001
PMID: 11810249
Feasibility study of a tissue-specific approach to barley proteome analysis: aleurone layer, endosperm, embryo and single seeds
Finnie C, Svensson B., J. Cereal Sci. 38(2), 2003
PMID: IND44758901
Finnie C, Svensson B., J. Cereal Sci. 38(2), 2003
PMID: IND44758901
Transcript profiles and deduced changes of metabolic pathways in maternal and filial tissues of developing barley grains.
Sreenivasulu N, Altschmied L, Radchuk V, Gubatz S, Wobus U, Weschke W., Plant J. 37(4), 2004
PMID: 14756762
Sreenivasulu N, Altschmied L, Radchuk V, Gubatz S, Wobus U, Weschke W., Plant J. 37(4), 2004
PMID: 14756762
AUTHOR UNKNOWN, Medicago truncatula 137(), 2005
A small-scale procedure for the rapid isolation of plant RNAs.
Verwoerd TC, Dekker BM, Hoekema A., Nucleic Acids Res. 17(6), 1989
PMID: 2468132
Verwoerd TC, Dekker BM, Hoekema A., Nucleic Acids Res. 17(6), 1989
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AUTHOR UNKNOWN, Medicago truncatula. 108(), 2004
AUTHOR UNKNOWN, Vicia faba 191(), 1993
EMMA: a platform for consistent storage and efficient analysis of microarray data.
Dondrup M, Goesmann A, Bartels D, Kalinowski J, Krause L, Linke B, Rupp O, Sczyrba A, Puhler A, Meyer F., J. Biotechnol. 106(2-3), 2003
PMID: 14651856
Dondrup M, Goesmann A, Bartels D, Kalinowski J, Krause L, Linke B, Rupp O, Sczyrba A, Puhler A, Meyer F., J. Biotechnol. 106(2-3), 2003
PMID: 14651856
AUTHOR UNKNOWN, Statistica Sinica 12(), 2002
Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses.
Usadel B, Nagel A, Thimm O, Redestig H, Blaesing OE, Palacios-Rojas N, Selbig J, Hannemann J, Piques MC, Steinhauser D, Scheible WR, Gibon Y, Morcuende R, Weicht D, Meyer S, Stitt M., Plant Physiol. 138(3), 2005
PMID: 16009995
Usadel B, Nagel A, Thimm O, Redestig H, Blaesing OE, Palacios-Rojas N, Selbig J, Hannemann J, Piques MC, Steinhauser D, Scheible WR, Gibon Y, Morcuende R, Weicht D, Meyer S, Stitt M., Plant Physiol. 138(3), 2005
PMID: 16009995
Cluster analysis and display of genome-wide expression patterns.
Eisen MB, Spellman PT, Brown PO, Botstein D., Proc. Natl. Acad. Sci. U.S.A. 95(25), 1998
PMID: 9843981
Eisen MB, Spellman PT, Brown PO, Botstein D., Proc. Natl. Acad. Sci. U.S.A. 95(25), 1998
PMID: 9843981
AUTHOR UNKNOWN, 0
AUTHOR UNKNOWN, Medicago truncatula 56(), 2005
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A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding.
Bradford MM., Anal. Biochem. 72(), 1976
PMID: 942051
Bradford MM., Anal. Biochem. 72(), 1976
PMID: 942051
Proteomics of Arabidopsis seed germination. A comparative study of wild-type and gibberellin-deficient seeds.
Gallardo K, Job C, Groot SP, Puype M, Demol H, Vandekerckhove J, Job D., Plant Physiol. 129(2), 2002
PMID: 12068122
Gallardo K, Job C, Groot SP, Puype M, Demol H, Vandekerckhove J, Job D., Plant Physiol. 129(2), 2002
PMID: 12068122
AUTHOR UNKNOWN, Medicago truncatula 1(), 2001
AUTHOR UNKNOWN, 0
Use of matrix clusters and trypsin autolysis fragments as mass calibrants in matrix-assisted laser desorption/ionization time-of-flight mass spectrometry.
Harris WA, Janecki DJ, Reilly JP., Rapid Commun. Mass Spectrom. 16(18), 2002
PMID: 12207358
Harris WA, Janecki DJ, Reilly JP., Rapid Commun. Mass Spectrom. 16(18), 2002
PMID: 12207358
Unmatched masses in peptide mass fingerprints caused by cross-contamination: an updated statistical result.
Ding Q, Xiao L, Xiong S, Jia Y, Que H, Guo Y, Liu S., Proteomics 3(7), 2003
PMID: 12872232
Ding Q, Xiao L, Xiong S, Jia Y, Que H, Guo Y, Liu S., Proteomics 3(7), 2003
PMID: 12872232
The effect of alpha-amanitin on the Arabidopsis seed proteome highlights the distinct roles of stored and neosynthesized mRNAs during germination.
Rajjou L, Gallardo K, Debeaujon I, Vandekerckhove J, Job C, Job D., Plant Physiol. 134(4), 2004
PMID: 15047896
Rajjou L, Gallardo K, Debeaujon I, Vandekerckhove J, Job C, Job D., Plant Physiol. 134(4), 2004
PMID: 15047896
AUTHOR UNKNOWN, clpP 44(), 2003
Importance of methionine biosynthesis for Arabidopsis seed germination and seedling growth.
Gallardo K, Job C, Groot SP, Puype M, Demol H, Vandekerckhove J, Job D., Physiol Plant 116(2), 2002
PMID: 12354201
Gallardo K, Job C, Groot SP, Puype M, Demol H, Vandekerckhove J, Job D., Physiol Plant 116(2), 2002
PMID: 12354201
AUTHOR UNKNOWN, 0
Global analysis of stress-regulated mRNA turnover by using cDNA arrays.
Fan J, Yang X, Wang W, Wood WH 3rd, Becker KG, Gorospe M., Proc. Natl. Acad. Sci. U.S.A. 99(16), 2002
PMID: 12149460
Fan J, Yang X, Wang W, Wood WH 3rd, Becker KG, Gorospe M., Proc. Natl. Acad. Sci. U.S.A. 99(16), 2002
PMID: 12149460
AUTHOR UNKNOWN, Lotus japonicus 134(), 2004
AUTHOR UNKNOWN, Picea abies 53(), 2002
AUTHOR UNKNOWN, Lemna paucicostata. 93(), 1990
Developmental changes in the metabolic protein profiles of wheat endosperm.
Vensel WH, Tanaka CK, Cai N, Wong JH, Buchanan BB, Hurkman WJ., Proteomics 5(6), 2005
PMID: 15800972
Vensel WH, Tanaka CK, Cai N, Wong JH, Buchanan BB, Hurkman WJ., Proteomics 5(6), 2005
PMID: 15800972
AUTHOR UNKNOWN, de novo 77(), 1985
AUTHOR UNKNOWN, de novo 279(), 2004
AUTHOR UNKNOWN, S 25(), 2001
Mitochondrial succinic-semialdehyde dehydrogenase of the gamma-aminobutyrate shunt is required to restrict levels of reactive oxygen intermediates in plants.
Bouche N, Fait A, Bouchez D, Moller SG, Fromm H., Proc. Natl. Acad. Sci. U.S.A. 100(11), 2003
PMID: 12740438
Bouche N, Fait A, Bouchez D, Moller SG, Fromm H., Proc. Natl. Acad. Sci. U.S.A. 100(11), 2003
PMID: 12740438
AUTHOR UNKNOWN, Arabidopsis thaliana 281(), 2006
Sulfate transport and assimilation in plants
Leustek T, Saito K., Plant Physiol. 120(3), 1999
PMID: 10398698
Leustek T, Saito K., Plant Physiol. 120(3), 1999
PMID: 10398698
AUTHOR UNKNOWN, In vitro 170(), 2006
Two subtilisin-like proteases from soybean.
Beilinson V, Moskalenko OV, Livingstone DS, Reverdatto SV, Jung R, Nielsen NC., Physiol Plant 115(4), 2002
PMID: 12121465
Beilinson V, Moskalenko OV, Livingstone DS, Reverdatto SV, Jung R, Nielsen NC., Physiol Plant 115(4), 2002
PMID: 12121465
The seed coat-specific expression of a subtilisin-like gene, SCS1, from soybean.
Batchelor AK, Boutilier K, Miller SS, Labbe H, Bowman L, Hu M, Johnson DA, Gijzen M, Miki BL., Planta 211(4), 2000
PMID: 11030547
Batchelor AK, Boutilier K, Miller SS, Labbe H, Bowman L, Hu M, Johnson DA, Gijzen M, Miki BL., Planta 211(4), 2000
PMID: 11030547
A subtilisin-like serine protease is required for epidermal surface formation in Arabidopsis embryos and juvenile plants.
Tanaka H, Onouchi H, Kondo M, Hara-Nishimura I, Nishimura M, Machida C, Machida Y., Development 128(23), 2001
PMID: 11731449
Tanaka H, Onouchi H, Kondo M, Hara-Nishimura I, Nishimura M, Machida C, Machida Y., Development 128(23), 2001
PMID: 11731449
AUTHOR UNKNOWN, Arabidopsis thaliana 370(), 2003
AUTHOR UNKNOWN, Arabidopsis thaliana S 142(), 2006
Plant sulphate transporters: co-ordination of uptake, intracellular and long-distance transport.
Buchner P, Takahashi H, Hawkesford MJ., J. Exp. Bot. 55(404), 2004
PMID: 15258169
Buchner P, Takahashi H, Hawkesford MJ., J. Exp. Bot. 55(404), 2004
PMID: 15258169
Evidence of a key role for photosynthetic oxygen release in oil storage in developing soybean seeds.
Rolletschek H, Radchuk R, Klukas C, Schreiber F, Wobus U, Borisjuk L., New Phytol. 167(3), 2005
PMID: 16101914
Rolletschek H, Radchuk R, Klukas C, Schreiber F, Wobus U, Borisjuk L., New Phytol. 167(3), 2005
PMID: 16101914
Synthesis of the sulfur amino acids: cysteine and methionine.
Wirtz M, Droux M., Photosyn. Res. 86(3), 2005
PMID: 16307301
Wirtz M, Droux M., Photosyn. Res. 86(3), 2005
PMID: 16307301
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