The Shapley value of phylogenetic trees

Haake C-J, Kashiwada A, Su FE (2008)
JOURNAL OF MATHEMATICAL BIOLOGY 56(4): 479-497.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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Autor*in
Haake, Claus-JochenUniBi; Kashiwada, Akemi; Su, Francis Edward
Abstract / Bemerkung
Every weighted tree corresponds naturally to a cooperative game that we call a tree game; it assigns to each subset of leaves the sum of the weights of the minimal subtree spanned by those leaves. In the context of phylogenetic trees, the leaves are species and this assignment captures the diversity present in the coalition of species considered. We consider the Shapley value of tree games and suggest a biological interpretation. We determine the linear transformation M that shows the dependence of the Shapley value on the edge weights of the tree, and we also compute a null space basis of M. Both depend on the split counts of the tree. Finally, we characterize the Shapley value on tree games by four axioms, a counterpart to Shapley's original theorem on the larger class of cooperative games. We also include a brief discussion of the core of tree games.
Stichworte
phylogenetic trees; biodiversity; Shapley value; core
Erscheinungsjahr
2008
Zeitschriftentitel
JOURNAL OF MATHEMATICAL BIOLOGY
Band
56
Ausgabe
4
Seite(n)
479-497
ISSN
0303-6812
eISSN
1432-1416
Page URI
https://pub.uni-bielefeld.de/record/1630744

Zitieren

Haake C-J, Kashiwada A, Su FE. The Shapley value of phylogenetic trees. JOURNAL OF MATHEMATICAL BIOLOGY. 2008;56(4):479-497.
Haake, C. - J., Kashiwada, A., & Su, F. E. (2008). The Shapley value of phylogenetic trees. JOURNAL OF MATHEMATICAL BIOLOGY, 56(4), 479-497. https://doi.org/10.1007/s00285-007-0126-2
Haake, Claus-Jochen, Kashiwada, Akemi, and Su, Francis Edward. 2008. “The Shapley value of phylogenetic trees”. JOURNAL OF MATHEMATICAL BIOLOGY 56 (4): 479-497.
Haake, C. - J., Kashiwada, A., and Su, F. E. (2008). The Shapley value of phylogenetic trees. JOURNAL OF MATHEMATICAL BIOLOGY 56, 479-497.
Haake, C.-J., Kashiwada, A., & Su, F.E., 2008. The Shapley value of phylogenetic trees. JOURNAL OF MATHEMATICAL BIOLOGY, 56(4), p 479-497.
C.-J. Haake, A. Kashiwada, and F.E. Su, “The Shapley value of phylogenetic trees”, JOURNAL OF MATHEMATICAL BIOLOGY, vol. 56, 2008, pp. 479-497.
Haake, C.-J., Kashiwada, A., Su, F.E.: The Shapley value of phylogenetic trees. JOURNAL OF MATHEMATICAL BIOLOGY. 56, 479-497 (2008).
Haake, Claus-Jochen, Kashiwada, Akemi, and Su, Francis Edward. “The Shapley value of phylogenetic trees”. JOURNAL OF MATHEMATICAL BIOLOGY 56.4 (2008): 479-497.

12 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

On the Shapley Value of Unrooted Phylogenetic Trees.
Wicke K, Fischer M., Bull Math Biol 81(2), 2019
PMID: 29344760
Global priorities for conserving the evolutionary history of sharks, rays and chimaeras.
Stein RW, Mull CG, Kuhn TS, Aschliman NC, Davidson LNK, Joy JB, Smith GJ, Dulvy NK, Mooers AO., Nat Ecol Evol 2(2), 2018
PMID: 29348644
Prioritizing populations for conservation using phylogenetic networks.
Volkmann L, Martyn I, Moulton V, Spillner A, Mooers AO., PLoS One 9(2), 2014
PMID: 24586451
Measuring Evolutionary Isolation for Conservation.
Redding DW, Mazel F, Mooers AØ., PLoS One 9(12), 2014
PMID: 25493934
Computing evolutionary distinctiveness indices in large scale analysis.
Martyn I, Kuhn TS, Mooers AO, Moulton V, Spillner A., Algorithms Mol Biol 7(), 2012
PMID: 22502588
BIO::Phylo-phyloinformatic analysis using perl.
Vos RA, Caravas J, Hartmann K, Jensen MA, Miller C., BMC Bioinformatics 12(), 2011
PMID: 21352572
Investing in evolutionary history: implementing a phylogenetic approach for mammal conservation.
Collen B, Turvey ST, Waterman C, Meredith HM, Kuhn TS, Baillie JE, Isaac NJ., Philos Trans R Soc Lond B Biol Sci 366(1578), 2011
PMID: 21844040

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