An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics

Rosso MG, Li Y, Strizhov N, Reiss B, Dekker K, Weisshaar B (2003)
Plant Molecular Biology 53(1/2): 247-259.

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DOI
Autor*in
Rosso, Mario G.; Li, Yong; Strizhov, Nicolai; Reiss, Bernd; Dekker, Koen; Weisshaar, BerndUniBi
Einrichtung
Centrum für Biotechnologie > Institut für Genomforschung und Systembiologie
Fakultät für Biologie > Genetik und Genomik der Pflanzen
Centrum für Biotechnologie > Arbeitsgruppe B. Weisshaar
Abstract / Bemerkung
The GABI-Kat population of T-DNA mutagenized Arabidopsis thaliana lines with sequence-characterized insertion sites is used extensively for efficient progress in plant functional genomics. Here we provide details about the establishment of the material, demonstrate the population's functionality and discuss results from quality control studies. T-DNA insertion mutants of the accession Columbia (Col-0) were created by Agrobacterium tumefaciens-mediated transformation. To allow selection of transformed plants under greenhouse conditions, a sulfadiazine resistance marker was employed. DNA from leaves of T1 plants was extracted and used as a template for PCR-based amplification of DNA fragments spanning insertion site borders. After sequencing, the data were placed in a flanking sequence tag (FST) database describing which mutant allele was present in which line. Analysis of the distribution of T-DNA insertions revealed a clear bias towards intergenic regions. Insertion sites appeared more frequent in regions in front of the ATG and after STOP codons of predicted genes. Segregation analysis for sulfadiazine resistance showed that 62% of the transformants contain an insertion at only one genetic locus. In quality control studies with gene-specific primers in combination with T-DNA primers, 76% of insertions could be confirmed. Finally, the functionality of the GABI-Kat population was demonstrated by exemplary confirmation of several new transparent testa alleles, as well as a number of other mutants, which were identified on the basis of the FST data.
Stichworte
knock-out; insertion mutagenesis; gene function; FST; reverse genetics
Erscheinungsjahr
2003
Zeitschriftentitel
Plant Molecular Biology
Band
53
Ausgabe
1/2
Seite(n)
247-259
ISSN
0167-4412
Page URI
https://pub.uni-bielefeld.de/record/1609190

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Rosso MG, Li Y, Strizhov N, Reiss B, Dekker K, Weisshaar B. An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics. Plant Molecular Biology. 2003;53(1/2):247-259.
Rosso, M. G., Li, Y., Strizhov, N., Reiss, B., Dekker, K., & Weisshaar, B. (2003). An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics. Plant Molecular Biology, 53(1/2), 247-259. https://doi.org/10.1023/B:PLAN.0000009297.37235.4a
Rosso, Mario G., Li, Yong, Strizhov, Nicolai, Reiss, Bernd, Dekker, Koen, and Weisshaar, Bernd. 2003. “An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics”. Plant Molecular Biology 53 (1/2): 247-259.
Rosso, M. G., Li, Y., Strizhov, N., Reiss, B., Dekker, K., and Weisshaar, B. (2003). An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics. Plant Molecular Biology 53, 247-259.
Rosso, M.G., et al., 2003. An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics. Plant Molecular Biology, 53(1/2), p 247-259.
M.G. Rosso, et al., “An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics”, Plant Molecular Biology, vol. 53, 2003, pp. 247-259.
Rosso, M.G., Li, Y., Strizhov, N., Reiss, B., Dekker, K., Weisshaar, B.: An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics. Plant Molecular Biology. 53, 247-259 (2003).
Rosso, Mario G., Li, Yong, Strizhov, Nicolai, Reiss, Bernd, Dekker, Koen, and Weisshaar, Bernd. “An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics”. Plant Molecular Biology 53.1/2 (2003): 247-259.

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Hunter CT, Suzuki M, Saunders J, Wu S, Tasi A, McCarty DR, Koch KE., Front Plant Sci 4(), 2014
PMID: 24432026
Effect of T-DNA insertions on mRNA transcript copy numbers upstream and downstream of the insertion site in Arabidopsis thaliana explored by surface enhanced Raman spectroscopy.
Kadam U, Moeller CA, Irudayaraj J, Schulz B., Plant Biotechnol J 12(5), 2014
PMID: 24460907
Perturbation of auxin homeostasis caused by mitochondrial FtSH4 gene-mediated peroxidase accumulation regulates arabidopsis architecture.
Zhang S, Wu J, Yuan D, Zhang D, Huang Z, Xiao L, Yang C., Mol Plant 7(5), 2014
PMID: 24482432
The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression.
Coego A, Brizuela E, Castillejo P, Ruíz S, Koncz C, del Pozo JC, Piñeiro M, Jarillo JA, Paz-Ares J, León J, TRANSPLANTA Consortium., Plant J 77(6), 2014
PMID: 24456507
Local evolution of seed flotation in Arabidopsis.
Saez-Aguayo S, Rondeau-Mouro C, Macquet A, Kronholm I, Ralet MC, Berger A, Sallé C, Poulain D, Granier F, Botran L, Loudet O, de Meaux J, Marion-Poll A, North HM., PLoS Genet 10(3), 2014
PMID: 24625826
Divergent functions of the Arabidopsis mitochondrial SCO proteins: HCC1 is essential for COX activity while HCC2 is involved in the UV-B stress response.
Steinebrunner I, Gey U, Andres M, Garcia L, Gonzalez DH., Front Plant Sci 5(), 2014
PMID: 24723925
Cell wall-related proteins of unknown function: missing links in plant cell wall development.
Mewalal R, Mizrachi E, Mansfield SD, Myburg AA., Plant Cell Physiol 55(6), 2014
PMID: 24683037
GEm-Related 5 (GER5), an ABA and stress-responsive GRAM domain protein regulating seed development and inflorescence architecture.
Baron KN, Schroeder DF, Stasolla C., Plant Sci 223(), 2014
PMID: 24767125
Dissecting a hidden gene duplication: the Arabidopsis thaliana SEC10 locus.
Vukašinović N, Cvrčková F, Eliáš M, Cole R, Fowler JE, Žárský V, Synek L., PLoS One 9(4), 2014
PMID: 24728280
The rice FISH BONE gene encodes a tryptophan aminotransferase, which affects pleiotropic auxin-related processes.
Yoshikawa T, Ito M, Sumikura T, Nakayama A, Nishimura T, Kitano H, Yamaguchi I, Koshiba T, Hibara K, Nagato Y, Itoh J., Plant J 78(6), 2014
PMID: 24654985
Update on transparent testa mutants from Arabidopsis thaliana: characterisation of new alleles from an isogenic collection.
Appelhagen I, Thiedig K, Nordholt N, Schmidt N, Huep G, Sagasser M, Weisshaar B., Planta 240(5), 2014
PMID: 24903359
Comparative analysis of Arabidopsis UGT74 glucosyltransferases reveals a special role of UGT74C1 in glucosinolate biosynthesis.
Grubb CD, Zipp BJ, Kopycki J, Schubert M, Quint M, Lim EK, Bowles DJ, Pedras MS, Abel S., Plant J 79(1), 2014
PMID: 24779768
Leaf phenomics: a systematic reverse genetic screen for Arabidopsis leaf mutants.
Wilson-Sánchez D, Rubio-Díaz S, Muñoz-Viana R, Pérez-Pérez JM, Jover-Gil S, Ponce MR, Micol JL., Plant J 79(5), 2014
PMID: 24946828
An easy-to-use primer design tool to address paralogous loci and T-DNA insertion sites in the genome of Arabidopsis thaliana.
Huep G, Kleinboelting N, Weisshaar B., Plant Methods 10(), 2014
PMID: 25324895
Selective induction and subcellular distribution of ACONITASE 3 reveal the importance of cytosolic citrate metabolism during lipid mobilization in Arabidopsis.
Hooks MA, Allwood JW, Harrison JK, Kopka J, Erban A, Goodacre R, Balk J., Biochem J 463(2), 2014
PMID: 25061985
Reliable in silico identification of sequence polymorphisms and their application for extending the genetic map of sugar beet (Beta vulgaris).
Holtgräwe D, Sörensen TR, Viehöver P, Schneider J, Schulz B, Borchardt D, Kraft T, Himmelbauer H, Weisshaar B., PLoS One 9(10), 2014
PMID: 25302600
Ion antiport accelerates photosynthetic acclimation in fluctuating light environments.
Armbruster U, Carrillo LR, Venema K, Pavlovic L, Schmidtmann E, Kornfeld A, Jahns P, Berry JA, Kramer DM, Jonikas MC., Nat Commun 5(), 2014
PMID: 25451040
AtSIG6 and other members of the sigma gene family jointly but differentially determine plastid target gene expression in Arabidopsis thaliana.
Bock S, Ortelt J, Link G., Front Plant Sci 5(), 2014
PMID: 25505479
Developmentally distinct activities of the exocyst enable rapid cell elongation and determine meristem size during primary root growth in Arabidopsis.
Cole RA, McInally SA, Fowler JE., BMC Plant Biol 14(), 2014
PMID: 25551204
In vivo function of Tic22, a protein import component of the intermembrane space of chloroplasts.
Rudolf M, Machettira AB, Groß LE, Weber KL, Bolte K, Bionda T, Sommer MS, Maier UG, Weber AP, Schleiff E, Tripp J., Mol Plant 6(3), 2013
PMID: 23204504
An Arabidopsis cell growth defect factor-related protein, CRS, promotes plant senescence by increasing the production of hydrogen peroxide.
Cui MH, Ok SH, Yoo KS, Jung KW, Yoo SD, Shin JS., Plant Cell Physiol 54(1), 2013
PMID: 23220690
Compensatory mutations in predicted metal transporters modulate auxin conjugate responsiveness in Arabidopsis.
Rampey RA, Baldridge MT, Farrow DC, Bay SN, Bartel B., G3 (Bethesda) 3(1), 2013
PMID: 23316445
Redundant and non-redundant roles of the trehalose-6-phosphate phosphatases in leaf growth, root hair specification and energy-responses in Arabidopsis.
Van Houtte H, López-Galvis L, Vandesteene L, Beeckman T, Van Dijck P., Plant Signal Behav 8(3), 2013
PMID: 23299328
Importance of adenosine-to-inosine editing adjacent to the anticodon in an Arabidopsis alanine tRNA under environmental stress.
Zhou W, Karcher D, Bock R., Nucleic Acids Res 41(5), 2013
PMID: 23355609
PECTIN METHYLESTERASE INHIBITOR6 promotes Arabidopsis mucilage release by limiting methylesterification of homogalacturonan in seed coat epidermal cells.
Saez-Aguayo S, Ralet MC, Berger A, Botran L, Ropartz D, Marion-Poll A, North HM., Plant Cell 25(1), 2013
PMID: 23362209
Regulation of flowering by trehalose-6-phosphate signaling in Arabidopsis thaliana.
Wahl V, Ponnu J, Schlereth A, Arrivault S, Langenecker T, Franke A, Feil R, Lunn JE, Stitt M, Schmid M., Science 339(6120), 2013
PMID: 23393265
Generation and analysis of a complete mutant set for the Arabidopsis FT/TFL1 family shows specific effects on thermo-sensitive flowering regulation.
Kim W, Park TI, Yoo SJ, Jun AR, Ahn JH., J Exp Bot 64(6), 2013
PMID: 23404901
Arabidopsis A BOUT DE SOUFFLE is a putative mitochondrial transporter involved in photorespiratory metabolism and is required for meristem growth at ambient CO₂ levels.
Eisenhut M, Planchais S, Cabassa C, Guivarc'h A, Justin AM, Taconnat L, Renou JP, Linka M, Gagneul D, Timm S, Bauwe H, Carol P, Weber AP., Plant J 73(5), 2013
PMID: 23181524
Cyclic nucleotide gated channels 7 and 8 are essential for male reproductive fertility.
Tunc-Ozdemir M, Rato C, Brown E, Rogers S, Mooneyham A, Frietsch S, Myers CT, Poulsen LR, Malhó R, Harper JF., PLoS One 8(2), 2013
PMID: 23424627
AtLAZY1 is a signaling component required for gravitropism of the Arabidopsis thaliana inflorescence.
Yoshihara T, Spalding EP, Iino M., Plant J 74(2), 2013
PMID: 23331961
Phosphorylation of an ERF transcription factor by Arabidopsis MPK3/MPK6 regulates plant defense gene induction and fungal resistance.
Meng X, Xu J, He Y, Yang KY, Mordorski B, Liu Y, Zhang S., Plant Cell 25(3), 2013
PMID: 23524660
WOX4 and WOX14 act downstream of the PXY receptor kinase to regulate plant vascular proliferation independently of any role in vascular organisation.
Etchells JP, Provost CM, Mishra L, Turner SR., Development 140(10), 2013
PMID: 23578929
Evolutionary, molecular and genetic analyses of Tic22 homologues in Arabidopsis thaliana chloroplasts.
Kasmati AR, Töpel M, Khan NZ, Patel R, Ling Q, Karim S, Aronsson H, Jarvis P., PLoS One 8(5), 2013
PMID: 23675512
Requirement for the plastidial oxidative pentose phosphate pathway for nitrate assimilation in Arabidopsis.
Bussell JD, Keech O, Fenske R, Smith SM., Plant J 75(4), 2013
PMID: 23621281
Arabidopsis plants lacking PsbQ and PsbR subunits of the oxygen-evolving complex show altered PSII super-complex organization and short-term adaptive mechanisms.
Allahverdiyeva Y, Suorsa M, Rossi F, Pavesi A, Kater MM, Antonacci A, Tadini L, Pribil M, Schneider A, Wanner G, Leister D, Aro EM, Barbato R, Pesaresi P., Plant J 75(4), 2013
PMID: 23647309
A plant homolog of animal glutamate receptors is an ion channel gated by multiple hydrophobic amino acids.
Tapken D, Anschütz U, Liu LH, Huelsken T, Seebohm G, Becker D, Hollmann M., Sci Signal 6(279), 2013
PMID: 23757024
LIFEGUARD proteins support plant colonization by biotrophic powdery mildew fungi.
Weis C, Hückelhoven R, Eichmann R., J Exp Bot 64(12), 2013
PMID: 23888068
Cytochrome b5 reductase encoded by CBR1 is essential for a functional male gametophyte in Arabidopsis.
Wayne LL, Wallis JG, Kumar R, Markham JE, Browse J., Plant Cell 25(8), 2013
PMID: 23995085
The REIL1 and REIL2 proteins of Arabidopsis thaliana are required for leaf growth in the cold.
Schmidt S, Dethloff F, Beine-Golovchuk O, Kopka J., Plant Physiol 163(4), 2013
PMID: 24038679
Targeted deletion and inversion of tandemly arrayed genes in Arabidopsis thaliana using zinc finger nucleases.
Qi Y, Li X, Zhang Y, Starker CG, Baltes NJ, Zhang F, Sander JD, Reyon D, Joung JK, Voytas DF., G3 (Bethesda) 3(10), 2013
PMID: 23979943
Roles of BOR2, a boron exporter, in cross linking of rhamnogalacturonan II and root elongation under boron limitation in Arabidopsis.
Miwa K, Wakuta S, Takada S, Ide K, Takano J, Naito S, Omori H, Matsunaga T, Fujiwara T., Plant Physiol 163(4), 2013
PMID: 24114060
Arabidopsis YELLOW STRIPE-LIKE7 (YSL7) and YSL8 transporters mediate uptake of Pseudomonas virulence factor syringolin A into plant cells.
Hofstetter SS, Dudnik A, Widmer H, Dudler R., Mol Plant Microbe Interact 26(11), 2013
PMID: 23945001
The Arabidopsis thaliana Mob1A gene is required for organ growth and correct tissue patterning of the root tip.
Pinosa F, Begheldo M, Pasternak T, Zermiani M, Paponov IA, Dovzhenko A, Barcaccia G, Ruperti B, Palme K., Ann Bot 112(9), 2013
PMID: 24201137
GreenGate---a novel, versatile, and efficient cloning system for plant transgenesis.
Lampropoulos A, Sutikovic Z, Wenzl C, Maegele I, Lohmann JU, Forner J., PLoS One 8(12), 2013
PMID: 24376629
The global translation profile in a ribosomal protein mutant resembles that of an eIF3 mutant.
Tiruneh BS, Kim BH, Gallie DR, Roy B, von Arnim AG., BMC Biol 11(), 2013
PMID: 24377433
A dicotyledon-specific glutaredoxin GRXC1 family with dimer-dependent redox regulation is functionally redundant with GRXC2.
Riondet C, Desouris JP, Montoya JG, Chartier Y, Meyer Y, Reichheld JP., Plant Cell Environ 35(2), 2012
PMID: 21767278
An alternatively spliced domain of the NDC1 NAD(P)H dehydrogenase gene strongly influences the expression of the ACTIN2 reference gene in Arabidopsis thaliana.
Wallström SV, Aidemark M, Escobar MA, Rasmusson AG., Plant Sci 183(), 2012
PMID: 22195593
Mitochondrial and plastidial COG0354 proteins have folate-dependent functions in iron-sulphur cluster metabolism.
Waller JC, Ellens KW, Alvarez S, Loizeau K, Ravanel S, Hanson AD., J Exp Bot 63(1), 2012
PMID: 21984653
The plastid-specific ribosomal proteins of Arabidopsis thaliana can be divided into non-essential proteins and genuine ribosomal proteins.
Tiller N, Weingartner M, Thiele W, Maximova E, Schöttler MA, Bock R., Plant J 69(2), 2012
PMID: 21923745
BRCA2 is a mediator of RAD51- and DMC1-facilitated homologous recombination in Arabidopsis thaliana.
Seeliger K, Dukowic-Schulze S, Wurz-Wildersinn R, Pacher M, Puchta H., New Phytol 193(2), 2012
PMID: 22077663
GABI-Kat SimpleSearch: new features of the Arabidopsis thaliana T-DNA mutant database.
Kleinboelting N, Huep G, Kloetgen A, Viehoever P, Weisshaar B., Nucleic Acids Res 40(database issue), 2012
PMID: 22080561
MES16, a member of the methylesterase protein family, specifically demethylates fluorescent chlorophyll catabolites during chlorophyll breakdown in Arabidopsis.
Christ B, Schelbert S, Aubry S, Süssenbacher I, Müller T, Kräutler B, Hörtensteiner S., Plant Physiol 158(2), 2012
PMID: 22147518
Ethylene-responsive element-binding factor 5, ERF5, is involved in chitin-induced innate immunity response.
Son GH, Wan J, Kim HJ, Nguyen XC, Chung WS, Hong JC, Stacey G., Mol Plant Microbe Interact 25(1), 2012
PMID: 21936663
Mutations in the antiviral RNAi defense pathway modify Brome mosaic virus RNA recombinant profiles.
Dzianott A, Sztuba-Solińska J, Bujarski JJ., Mol Plant Microbe Interact 25(1), 2012
PMID: 21936664
A comprehensive dataset of genes with a loss-of-function mutant phenotype in Arabidopsis.
Lloyd J, Meinke D., Plant Physiol 158(3), 2012
PMID: 22247268
Glycolate oxidase modulates reactive oxygen species-mediated signal transduction during nonhost resistance in Nicotiana benthamiana and Arabidopsis.
Rojas CM, Senthil-Kumar M, Wang K, Ryu CM, Kaundal A, Mysore KS., Plant Cell 24(1), 2012
PMID: 22286136
The GCP3-interacting proteins GIP1 and GIP2 are required for γ-tubulin complex protein localization, spindle integrity, and chromosomal stability.
Janski N, Masoud K, Batzenschlager M, Herzog E, Evrard JL, Houlné G, Bourge M, Chabouté ME, Schmit AC., Plant Cell 24(3), 2012
PMID: 22427335
Comparability of imazapyr-resistant Arabidopsis created by transgenesis and mutagenesis.
Schnell J, Labbé H, Kovinich N, Manabe Y, Miki B., Transgenic Res 21(6), 2012
PMID: 22430369
The LysM receptor-like kinase LysM RLK1 is required to activate defense and abiotic-stress responses induced by overexpression of fungal chitinases in Arabidopsis plants.
Brotman Y, Landau U, Pnini S, Lisec J, Balazadeh S, Mueller-Roeber B, Zilberstein A, Willmitzer L, Chet I, Viterbo A., Mol Plant 5(5), 2012
PMID: 22461667
Genetic and molecular characterization reveals a unique nucleobase cation symporter 1 in Arabidopsis.
Mourad GS, Tippmann-Crosby J, Hunt KA, Gicheru Y, Bade K, Mansfield TA, Schultes NP., FEBS Lett 586(9), 2012
PMID: 22616996
The Arabidopsis ubiquitin ligases ATL31 and ATL6 control the defense response as well as the carbon/nitrogen response.
Maekawa S, Sato T, Asada Y, Yasuda S, Yoshida M, Chiba Y, Yamaguchi J., Plant Mol Biol 79(3), 2012
PMID: 22481162
CDKF;1 and CDKD protein kinases regulate phosphorylation of serine residues in the C-terminal domain of Arabidopsis RNA polymerase II.
Hajheidari M, Farrona S, Huettel B, Koncz Z, Koncz C., Plant Cell 24(4), 2012
PMID: 22547781
The Fanconi anemia ortholog FANCM ensures ordered homologous recombination in both somatic and meiotic cells in Arabidopsis.
Knoll A, Higgins JD, Seeliger K, Reha SJ, Dangel NJ, Bauknecht M, Schröpfer S, Franklin FC, Puchta H., Plant Cell 24(4), 2012
PMID: 22547783
Developmentally non-redundant SET domain proteins SUVH2 and SUVH9 are required for transcriptional gene silencing in Arabidopsis thaliana.
Kuhlmann M, Mette MF., Plant Mol Biol 79(6), 2012
PMID: 22669745
Dual location of the mitochondrial preprotein transporters B14.7 and Tim23-2 in complex I and the TIM17:23 complex in Arabidopsis links mitochondrial activity and biogenesis.
Wang Y, Carrie C, Giraud E, Elhafez D, Narsai R, Duncan O, Whelan J, Murcha MW., Plant Cell 24(6), 2012
PMID: 22730406
Functional analysis of conserved motifs in the mechanosensitive channel homolog MscS-Like2 from Arabidopsis thaliana.
Jensen GS, Haswell ES., PLoS One 7(6), 2012
PMID: 22768278
Imitation Switch chromatin remodeling factors and their interacting RINGLET proteins act together in controlling the plant vegetative phase in Arabidopsis.
Li G, Zhang J, Li J, Yang Z, Huang H, Xu L., Plant J 72(2), 2012
PMID: 22694359
Reprogramming of H3K27me3 is critical for acquisition of pluripotency from cultured Arabidopsis tissues.
He C, Chen X, Huang H, Xu L., PLoS Genet 8(8), 2012
PMID: 22927830
Arabidopsis thaliana AtUTr7 encodes a golgi-localized UDP-glucose/UDP-galactose transporter that affects lateral root emergence.
Handford M, Rodríguez-Furlán C, Marchant L, Segura M, Gómez D, Alvarez-Buylla E, Xiong GY, Pauly M, Orellana A., Mol Plant 5(6), 2012
PMID: 22933714
Analysis of T-DNA alleles of flavonoid biosynthesis genes in Arabidopsis ecotype Columbia.
Bowerman PA, Ramirez MV, Price MB, Helm RF, Winkel BS., BMC Res Notes 5(), 2012
PMID: 22947320
A gene family derived from transposable elements during early angiosperm evolution has reproductive fitness benefits in Arabidopsis thaliana.
Joly-Lopez Z, Forczek E, Hoen DR, Juretic N, Bureau TE., PLoS Genet 8(9), 2012
PMID: 22969437
Impact of the absence of stem-specific β-glucosidases on lignin and monolignols.
Chapelle A, Morreel K, Vanholme R, Le-Bris P, Morin H, Lapierre C, Boerjan W, Jouanin L, Demont-Caulet N., Plant Physiol 160(3), 2012
PMID: 22984124
NBS1 plays a synergistic role with telomerase in the maintenance of telomeres in Arabidopsis thaliana.
Najdekrova L, Siroky J., BMC Plant Biol 12(), 2012
PMID: 22985462
Proteasome-mediated turnover of Arabidopsis MED25 is coupled to the activation of FLOWERING LOCUS T transcription.
Iñigo S, Giraldez AN, Chory J, Cerdán PD., Plant Physiol 160(3), 2012
PMID: 22992513
A systems biology view of responses to lignin biosynthesis perturbations in Arabidopsis.
Vanholme R, Storme V, Vanholme B, Sundin L, Christensen JH, Goeminne G, Halpin C, Rohde A, Morreel K, Boerjan W., Plant Cell 24(9), 2012
PMID: 23012438
Impact of SO(2) on Arabidopsis thaliana transcriptome in wildtype and sulfite oxidase knockout plants analyzed by RNA deep sequencing.
Hamisch D, Randewig D, Schliesky S, Bräutigam A, Weber AP, Geffers R, Herschbach C, Rennenberg H, Mendel RR, Hänsch R., New Phytol 196(4), 2012
PMID: 23025405
Gene dosage effect of WEE1 on growth and morphogenesis from arabidopsis hypocotyl explants.
Spadafora N, Perrotta L, Nieuwland J, Albani D, Bitonti MB, Herbert RJ, Doonan JH, Marchbank AM, Siciliano I, Lentz Grønlund A, Francis D, Rogers HJ., Ann Bot 110(8), 2012
PMID: 23065633
Versatile roles of Arabidopsis plastid ribosomal proteins in plant growth and development.
Romani I, Tadini L, Rossi F, Masiero S, Pribil M, Jahns P, Kater M, Leister D, Pesaresi P., Plant J 72(6), 2012
PMID: 22900828
Metabolic and transcriptomic changes induced in Arabidopsis by the rhizobacterium Pseudomonas fluorescens SS101.
van de Mortel JE, de Vos RC, Dekkers E, Pineda A, Guillod L, Bouwmeester K, van Loon JJ, Dicke M, Raaijmakers JM., Plant Physiol 160(4), 2012
PMID: 23073694
Background-dependent effects of polyglutamine variation in the Arabidopsis thaliana gene ELF3.
Undurraga SF, Press MO, Legendre M, Bujdoso N, Bale J, Wang H, Davis SJ, Verstrepen KJ, Queitsch C., Proc Natl Acad Sci U S A 109(47), 2012
PMID: 23129635
Forward chemical genetic screens in Arabidopsis identify genes that influence sensitivity to the phytotoxic compound sulfamethoxazole.
Schreiber KJ, Austin RS, Gong Y, Zhang J, Fung P, Wang PW, Guttman DS, Desveaux D., BMC Plant Biol 12(), 2012
PMID: 23176361
CLE peptides can negatively regulate protoxylem vessel formation via cytokinin signaling.
Kondo Y, Hirakawa Y, Kieber JJ, Fukuda H., Plant Cell Physiol 52(1), 2011
PMID: 20802224
BRCC36A is epistatic to BRCA1 in DNA crosslink repair and homologous recombination in Arabidopsis thaliana.
Block-Schmidt AS, Dukowic-Schulze S, Wanieck K, Reidt W, Puchta H., Nucleic Acids Res 39(1), 2011
PMID: 20817926
Three endo-β-mannanase genes expressed in the micropylar endosperm and in the radicle influence germination of Arabidopsis thaliana seeds.
Iglesias-Fernández R, Rodríguez-Gacio MC, Barrero-Sicilia C, Carbonero P, Matilla A., Planta 233(1), 2011
PMID: 20878180
Betaine aldehyde dehydrogenase genes from Arabidopsis with different sub-cellular localization affect stress responses.
Missihoun TD, Schmitz J, Klug R, Kirch HH, Bartels D., Planta 233(2), 2011
PMID: 21053011
HCC1, the Arabidopsis homologue of the yeast mitochondrial copper chaperone SCO1, is essential for embryonic development.
Steinebrunner I, Landschreiber M, Krause-Buchholz U, Teichmann J, Rödel G., J Exp Bot 62(1), 2011
PMID: 21041373
Involvement of Arabidopsis RACK1 in protein translation and its regulation by abscisic acid.
Guo J, Wang S, Valerius O, Hall H, Zeng Q, Li JF, Weston DJ, Ellis BE, Chen JG., Plant Physiol 155(1), 2011
PMID: 21098678
Ribosomal protein L27a is required for growth and patterning in Arabidopsis thaliana.
Szakonyi D, Byrne ME., Plant J 65(2), 2011
PMID: 21223391
Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
Bryant N, Lloyd J, Sweeney C, Myouga F, Meinke D., Plant Physiol 155(4), 2011
PMID: 21139083
Analysis of ven3 and ven6 reticulate mutants reveals the importance of arginine biosynthesis in Arabidopsis leaf development.
Mollá-Morales A, Sarmiento-Mañús R, Robles P, Quesada V, Pérez-Pérez JM, González-Bayón R, Hannah MA, Willmitzer L, Ponce MR, Micol JL., Plant J 65(3), 2011
PMID: 21265888
Metabolic sugar signal promotes Arabidopsis meristematic proliferation via G2.
Skylar A, Sung F, Hong F, Chory J, Wu X., Dev Biol 351(1), 2011
PMID: 21185286
Loss-of-function mutation of REDUCED WALL ACETYLATION2 in Arabidopsis leads to reduced cell wall acetylation and increased resistance to Botrytis cinerea.
Manabe Y, Nafisi M, Verhertbruggen Y, Orfila C, Gille S, Rautengarten C, Cherk C, Marcus SE, Somerville S, Pauly M, Knox JP, Sakuragi Y, Scheller HV., Plant Physiol 155(3), 2011
PMID: 21212300
Cytokinin regulates the activity of reproductive meristems, flower organ size, ovule formation, and thus seed yield in Arabidopsis thaliana.
Bartrina I, Otto E, Strnad M, Werner T, Schmülling T., Plant Cell 23(1), 2011
PMID: 21224426
Characterization of JAZ-interacting bHLH transcription factors that regulate jasmonate responses in Arabidopsis.
Niu Y, Figueroa P, Browse J., J Exp Bot 62(6), 2011
PMID: 21321051
The Arabidopsis peptide kiss of death is an inducer of programmed cell death.
Blanvillain R, Young B, Cai YM, Hecht V, Varoquaux F, Delorme V, Lancelin JM, Delseny M, Gallois P., EMBO J 30(6), 2011
PMID: 21326210
A plant-specific transcription factor IIB-related protein, pBRP2, is involved in endosperm growth control.
Cavel E, Pillot M, Pontier D, Lahmy S, Bies-Etheve N, Vega D, Grimanelli D, Lagrange T., PLoS One 6(2), 2011
PMID: 21390310
Perspectives on Systematic Analyses of Gene Function in Arabidopsis thaliana: New Tools, Topics and Trends.
Bolle C, Schneider A, Leister D., Curr Genomics 12(1), 2011
PMID: 21886450
Novel sulI binary vectors enable an inexpensive foliar selection method in Arabidopsis.
Thomson JG, Cook M, Guttman M, Smith J, Thilmony R., BMC Res Notes 4(), 2011
PMID: 21366919
Probing the roles of LRR RLK genes in Arabidopsis thaliana roots using a custom T-DNA insertion set.
ten Hove CA, Bochdanovits Z, Jansweijer VM, Koning FG, Berke L, Sanchez-Perez GF, Scheres B, Heidstra R., Plant Mol Biol 76(1-2), 2011
PMID: 21431781
High-throughput phenotyping of multicellular organisms: finding the link between genotype and phenotype.
Sozzani R, Benfey PN., Genome Biol 12(3), 2011
PMID: 21457493
Transporters in Arabidopsis roots mediating uptake of amino acids at naturally occurring concentrations.
Svennerstam H, Jämtgård S, Ahmad I, Huss-Danell K, Näsholm T, Ganeteg U., New Phytol 191(2), 2011
PMID: 21453345
Molecular and genetic analyses of Tic20 homologues in Arabidopsis thaliana chloroplasts.
Kasmati AR, Töpel M, Patel R, Murtaza G, Jarvis P., Plant J 66(5), 2011
PMID: 21395885
The interconversion of UDP-arabinopyranose and UDP-arabinofuranose is indispensable for plant development in Arabidopsis.
Rautengarten C, Ebert B, Herter T, Petzold CJ, Ishii T, Mukhopadhyay A, Usadel B, Scheller HV., Plant Cell 23(4), 2011
PMID: 21478444
Trans-repression of gene activity upstream of T-DNA tagged RLK902 links Arabidopsis root growth inhibition and downy mildew resistance.
ten Hove CA, de Jong M, Lapin D, Andel A, Sanchez-Perez GF, Tarutani Y, Suzuki Y, Heidstra R, van den Ackerveken G., PLoS One 6(4), 2011
PMID: 21532992
Malate transport by the vacuolar AtALMT6 channel in guard cells is subject to multiple regulation.
Meyer S, Scholz-Starke J, De Angeli A, Kovermann P, Burla B, Gambale F, Martinoia E., Plant J 67(2), 2011
PMID: 21443686
The phosphatidylcholine-hydrolysing phospholipase C NPC4 plays a role in response of Arabidopsis roots to salt stress.
Kocourková D, Krcková Z, Pejchar P, Veselková S, Valentová O, Wimalasekera R, Scherer GF, Martinec J., J Exp Bot 62(11), 2011
PMID: 21525137
EXORDIUM-LIKE1 promotes growth during low carbon availability in Arabidopsis.
Schröder F, Lisso J, Müssig C., Plant Physiol 156(3), 2011
PMID: 21543728
Arabidopsis nitrate transporter NRT1.9 is important in phloem nitrate transport.
Wang YY, Tsay YF., Plant Cell 23(5), 2011
PMID: 21571952
The sucrose synthase-1 promoter from Citrus sinensis directs expression of the β-glucuronidase reporter gene in phloem tissue and in response to wounding in transgenic plants.
Singer SD, Hily JM, Cox KD., Planta 234(3), 2011
PMID: 21594624
Members of the RKD transcription factor family induce an egg cell-like gene expression program.
Koszegi D, Johnston AJ, Rutten T, Czihal A, Altschmied L, Kumlehn J, Wüst SE, Kirioukhova O, Gheyselinck J, Grossniklaus U, Bäumlein H., Plant J 67(2), 2011
PMID: 21457369
A membrane trafficking pathway regulated by the plant-specific RAB GTPase ARA6.
Ebine K, Fujimoto M, Okatani Y, Nishiyama T, Goh T, Ito E, Dainobu T, Nishitani A, Uemura T, Sato MH, Thordal-Christensen H, Tsutsumi N, Nakano A, Ueda T., Nat Cell Biol 13(7), 2011
PMID: 21666683
Leucoanthocyanidin Dioxygenase in Arabidopsis thaliana: characterization of mutant alleles and regulation by MYB-BHLH-TTG1 transcription factor complexes.
Appelhagen I, Jahns O, Bartelniewoehner L, Sagasser M, Weisshaar B, Stracke R., Gene 484(1-2), 2011
PMID: 21683773
AtSAP130/AtSF3b-3 function is required for reproduction in Arabidopsis thaliana.
Aki S, Nakai H, Aoyama T, Oka A, Tsuge T., Plant Cell Physiol 52(8), 2011
PMID: 21680607
Succinic semialdehyde dehydrogenase is involved in the robust patterning of Arabidopsis leaves along the adaxial-abaxial axis.
Toyokura K, Watanabe K, Oiwaka A, Kusano M, Tameshige T, Tatematsu K, Matsumoto N, Tsugeki R, Saito K, Okada K., Plant Cell Physiol 52(8), 2011
PMID: 21690177
Analysis of the enhancer-blocking function of the TBS element from Petunia hybrida in transgenic Arabidopsis thaliana and Nicotiana tabacum.
Singer SD, Hily JM, Cox KD., Plant Cell Rep 30(11), 2011
PMID: 21706298
Acireductone dioxygenase 1 (ARD1) is an effector of the heterotrimeric G protein beta subunit in Arabidopsis.
Friedman EJ, Wang HX, Jiang K, Perovic I, Deshpande A, Pochapsky TC, Temple BR, Hicks SN, Harden TK, Jones AM., J Biol Chem 286(34), 2011
PMID: 21712381
Cytosolic γ-glutamyl peptidases process glutathione conjugates in the biosynthesis of glucosinolates and camalexin in Arabidopsis.
Geu-Flores F, Møldrup ME, Böttcher C, Olsen CE, Scheel D, Halkier BA., Plant Cell 23(6), 2011
PMID: 21712415
Arabidopsis IRE1 catalyses unconventional splicing of bZIP60 mRNA to produce the active transcription factor.
Nagashima Y, Mishiba K, Suzuki E, Shimada Y, Iwata Y, Koizumi N., Sci Rep 1(), 2011
PMID: 22355548
The RCC1 family protein RUG3 is required for splicing of nad2 and complex I biogenesis in mitochondria of Arabidopsis thaliana.
Kühn K, Carrie C, Giraud E, Wang Y, Meyer EH, Narsai R, des Francs-Small CC, Zhang B, Murcha MW, Whelan J., Plant J 67(6), 2011
PMID: 21623974
LOV KELCH PROTEIN2 and ZEITLUPE repress Arabidopsis photoperiodic flowering under non-inductive conditions, dependent on FLAVIN-BINDING KELCH REPEAT F-BOX1.
Takase T, Nishiyama Y, Tanihigashi H, Ogura Y, Miyazaki Y, Yamada Y, Kiyosue T., Plant J 67(4), 2011
PMID: 21518052
Developmental regulation of CYCA2s contributes to tissue-specific proliferation in Arabidopsis.
Vanneste S, Coppens F, Lee E, Donner TJ, Xie Z, Van Isterdael G, Dhondt S, De Winter F, De Rybel B, Vuylsteke M, De Veylder L, Friml J, Inzé D, Grotewold E, Scarpella E, Sack F, Beemster GT, Beeckman T., EMBO J 30(16), 2011
PMID: 21772250
Perturbation of Arabidopsis amino acid metabolism causes incompatibility with the adapted biotrophic pathogen Hyaloperonospora arabidopsidis.
Stuttmann J, Hubberten HM, Rietz S, Kaur J, Muskett P, Guerois R, Bednarek P, Hoefgen R, Parker JE., Plant Cell 23(7), 2011
PMID: 21784950
Two mechanosensitive channel homologs influence division ring placement in Arabidopsis chloroplasts.
Wilson ME, Jensen GS, Haswell ES., Plant Cell 23(8), 2011
PMID: 21810996
The Arabidopsis deubiquitinating enzyme AMSH3 interacts with ESCRT-III subunits and regulates their localization.
Katsiarimpa A, Anzenberger F, Schlager N, Neubert S, Hauser MT, Schwechheimer C, Isono E., Plant Cell 23(8), 2011
PMID: 21810997
Pairing of lacO tandem repeats in Arabidopsis thaliana nuclei requires the presence of hypermethylated, large arrays at two chromosomal positions, but does not depend on H3-lysine-9-dimethylation.
Jovtchev G, Borisova BE, Kuhlmann M, Fuchs J, Watanabe K, Schubert I, Mette MF., Chromosoma 120(6), 2011
PMID: 21830056
Pyrimidine degradation influences germination seedling growth and production of Arabidopsis seeds.
Cornelius S, Witz S, Rolletschek H, Möhlmann T., J Exp Bot 62(15), 2011
PMID: 21865177
AtHaspin phosphorylates histone H3 at threonine 3 during mitosis and contributes to embryonic patterning in Arabidopsis.
Ashtiyani RK, Moghaddam AM, Schubert V, Rutten T, Fuchs J, Demidov D, Blattner FR, Houben A., Plant J 68(3), 2011
PMID: 21749502
Photosystem II supercomplex remodeling serves as an entry mechanism for state transitions in Arabidopsis.
Dietzel L, Bräutigam K, Steiner S, Schüffler K, Lepetit B, Grimm B, Schöttler MA, Pfannschmidt T., Plant Cell 23(8), 2011
PMID: 21880991
Adenosine 5'-phosphosulfate reductase (APR2) mutation in Arabidopsis implicates glutathione deficiency in selenate toxicity.
Grant K, Carey NM, Mendoza M, Schulze J, Pilon M, Pilon-Smits EA, van Hoewyk D., Biochem J 438(2), 2011
PMID: 21585336
Biosynthesis and defensive function of Nδ-acetylornithine, a jasmonate-induced Arabidopsis metabolite.
Adio AM, Casteel CL, De Vos M, Kim JH, Joshi V, Li B, Juéry C, Daron J, Kliebenstein DJ, Jander G., Plant Cell 23(9), 2011
PMID: 21917546
Genome walking in eukaryotes.
Leoni C, Volpicella M, De Leo F, Gallerani R, Ceci LR., FEBS J 278(21), 2011
PMID: 21848672
A genetic screen reveals Arabidopsis stomatal and/or apoplastic defenses against Pseudomonas syringae pv. tomato DC3000.
Zeng W, Brutus A, Kremer JM, Withers JC, Gao X, Jones AD, He SY., PLoS Pathog 7(10), 2011
PMID: 21998587
The ATG1/ATG13 protein kinase complex is both a regulator and a target of autophagic recycling in Arabidopsis.
Suttangkakul A, Li F, Chung T, Vierstra RD., Plant Cell 23(10), 2011
PMID: 21984698
NFX1-LIKE2 (NFXL2) suppresses abscisic acid accumulation and stomatal closure in Arabidopsis thaliana.
Lisso J, Schröder F, Fisahn J, Müssig C., PLoS One 6(11), 2011
PMID: 22073231
Arabidopsis thaliana plastidial methionine sulfoxide reductases B, MSRBs, account for most leaf peptide MSR activity and are essential for growth under environmental constraints through a role in the preservation of photosystem antennae.
Laugier E, Tarrago L, Vieira Dos Santos C, Eymery F, Havaux M, Rey P., Plant J 61(2), 2010
PMID: 19874542
Disruption of poly(ADP-ribosyl)ation mechanisms alters responses of Arabidopsis to biotic stress.
Adams-Phillips L, Briggs AG, Bent AF., Plant Physiol 152(1), 2010
PMID: 19889874
The Chloroplast Function Database: a large-scale collection of Arabidopsis Ds/Spm- or T-DNA-tagged homozygous lines for nuclear-encoded chloroplast proteins, and their systematic phenotype analysis.
Myouga F, Akiyama K, Motohashi R, Kuromori T, Ito T, Iizumi H, Ryusui R, Sakurai T, Shinozaki K., Plant J 61(3), 2010
PMID: 19912565
Involvement of Arabidopsis thaliana phospholipase Dzeta2 in root hydrotropism through the suppression of root gravitropism.
Taniguchi YY, Taniguchi M, Tsuge T, Oka A, Aoyama T., Planta 231(2), 2010
PMID: 19915862
Plastidial glycolysis in developing Arabidopsis embryos.
Andriotis VM, Kruger NJ, Pike MJ, Smith AM., New Phytol 185(3), 2010
PMID: 20002588
Intersection of the tocopherol and plastoquinol metabolic pathways at the plastoglobule.
Zbierzak AM, Kanwischer M, Wille C, Vidi PA, Giavalisco P, Lohmann A, Briesen I, Porfirova S, Bréhélin C, Kessler F, Dörmann P., Biochem J 425(2), 2010
PMID: 19843012
Arabidopsis uracil DNA glycosylase (UNG) is required for base excision repair of uracil and increases plant sensitivity to 5-fluorouracil.
Córdoba-Cañero D, Dubois E, Ariza RR, Doutriaux MP, Roldán-Arjona T., J Biol Chem 285(10), 2010
PMID: 20056608
AtSIG6, a plastid sigma factor from Arabidopsis, reveals functional impact of cpCK2 phosphorylation.
Schweer J, Türkeri H, Link B, Link G., Plant J 62(2), 2010
PMID: 20088902
Metabolic profiling and cytological analysis of proanthocyanidins in immature seeds of Arabidopsis thaliana flavonoid accumulation mutants.
Kitamura S, Matsuda F, Tohge T, Yonekura-Sakakibara K, Yamazaki M, Saito K, Narumi I., Plant J 62(4), 2010
PMID: 20180920
A plant-specific histone H3 lysine 4 demethylase represses the floral transition in Arabidopsis.
Yang W, Jiang D, Jiang J, He Y., Plant J 62(4), 2010
PMID: 20202164
Arabidopsis has a cytosolic fumarase required for the massive allocation of photosynthate into fumaric acid and for rapid plant growth on high nitrogen.
Pracharoenwattana I, Zhou W, Keech O, Francisco PB, Udomchalothorn T, Tschoep H, Stitt M, Gibon Y, Smith SM., Plant J 62(5), 2010
PMID: 20202172
The development of Arabidopsis as a model plant.
Koornneef M, Meinke D., Plant J 61(6), 2010
PMID: 20409266
Linking genotype to phenotype using the Arabidopsis unimutant collection.
O'Malley RC, Ecker JR., Plant J 61(6), 2010
PMID: 20409268
Arabidopsis and primary photosynthetic metabolism - more than the icing on the cake.
Stitt M, Lunn J, Usadel B., Plant J 61(6), 2010
PMID: 20409279
RLF, a cytochrome b(5)-like heme/steroid binding domain protein, controls lateral root formation independently of ARF7/19-mediated auxin signaling in Arabidopsis thaliana.
Ikeyama Y, Tasaka M, Fukaki H., Plant J 62(5), 2010
PMID: 20230485
The RST and PARP-like domain containing SRO protein family: analysis of protein structure, function and conservation in land plants.
Jaspers P, Overmyer K, Wrzaczek M, Vainonen JP, Blomster T, Salojärvi J, Reddy RA, Kangasjärvi J., BMC Genomics 11(), 2010
PMID: 20226034
Distribution and characterization of more than 1000 T-DNA tags in the genome of Brachypodium distachyon community standard line Bd21.
Thole V, Worland B, Wright J, Bevan MW, Vain P., Plant Biotechnol J 8(6), 2010
PMID: 20374523
miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth.
Marin E, Jouannet V, Herz A, Lokerse AS, Weijers D, Vaucheret H, Nussaume L, Crespi MD, Maizel A., Plant Cell 22(4), 2010
PMID: 20363771
Non-redundant functions of two proline dehydrogenase isoforms in Arabidopsis.
Funck D, Eckard S, Müller G., BMC Plant Biol 10(), 2010
PMID: 20403182
BROTHER OF FT AND TFL1 (BFT) has TFL1-like activity and functions redundantly with TFL1 in inflorescence meristem development in Arabidopsis.
Yoo SJ, Chung KS, Jung SH, Yoo SY, Lee JS, Ahn JH., Plant J 63(2), 2010
PMID: 20409005
Arabidopsis stromal 70-kDa heat shock proteins are essential for chloroplast development.
Latijnhouwers M, Xu XM, Møller SG., Planta 232(3), 2010
PMID: 20506024
The conserved splicing factor SUA controls alternative splicing of the developmental regulator ABI3 in Arabidopsis.
Sugliani M, Brambilla V, Clerkx EJ, Koornneef M, Soppe WJ., Plant Cell 22(6), 2010
PMID: 20525852
The TOR pathway modulates the structure of cell walls in Arabidopsis.
Leiber RM, John F, Verhertbruggen Y, Diet A, Knox JP, Ringli C., Plant Cell 22(6), 2010
PMID: 20530756
Both the constitutive cauliflower mosaic virus 35S and tissue-specific AGAMOUS enhancers activate transcription autonomously in Arabidopsis thaliana.
Singer SD, Cox KD, Liu Z., Plant Mol Biol 74(3), 2010
PMID: 20703807
Tethering factors required for cytokinesis in Arabidopsis.
Thellmann M, Rybak K, Thiele K, Wanner G, Assaad FF., Plant Physiol 154(2), 2010
PMID: 20713617
TDIF peptide signaling regulates vascular stem cell proliferation via the WOX4 homeobox gene in Arabidopsis.
Hirakawa Y, Kondo Y, Fukuda H., Plant Cell 22(8), 2010
PMID: 20729381
Analysis of PRODUCTION OF FLAVONOL GLYCOSIDES-dependent flavonol glycoside accumulation in Arabidopsis thaliana plants reveals MYB11-, MYB12- and MYB111-independent flavonol glycoside accumulation.
Stracke R, Jahns O, Keck M, Tohge T, Niehaus K, Fernie AR, Weisshaar B., New Phytol 188(4), 2010
PMID: 20731781
Phosphoenolpyruvate provision to plastids is essential for gametophyte and sporophyte development in Arabidopsis thaliana.
Prabhakar V, Löttgert T, Geimer S, Dörmann P, Krüger S, Vijayakumar V, Schreiber L, Göbel C, Feussner K, Feussner I, Marin K, Staehr P, Bell K, Flügge UI, Häusler RE., Plant Cell 22(8), 2010
PMID: 20798327
Lack of α-xylosidase activity in Arabidopsis alters xyloglucan composition and results in growth defects.
Sampedro J, Pardo B, Gianzo C, Guitián E, Revilla G, Zarra I., Plant Physiol 154(3), 2010
PMID: 20801759
Kinetic analyses of plant water relocation using deuterium as tracer - reduced water flux of Arabidopsis pip2 aquaporin knockout mutants.
Da Ines O, Graf W, Franck KI, Albert A, Winkler JB, Scherb H, Stichler W, Schäffner AR., Plant Biol (Stuttg) 12 Suppl 1(), 2010
PMID: 20712628
BRIZ1 and BRIZ2 proteins form a heteromeric E3 ligase complex required for seed germination and post-germination growth in Arabidopsis thaliana.
Hsia MM, Callis J., J Biol Chem 285(47), 2010
PMID: 20810661
Pea chloroplast DnaJ-J8 and Toc12 are encoded by the same gene and localized in the stroma.
Chiu CC, Chen LJ, Li HM., Plant Physiol 154(3), 2010
PMID: 20841453
The Arabidopsis exocyst complex is involved in cytokinesis and cell plate maturation.
Fendrych M, Synek L, Pecenková T, Toupalová H, Cole R, Drdová E, Nebesárová J, Sedinová M, Hála M, Fowler JE, Zársky V., Plant Cell 22(9), 2010
PMID: 20870962
Mitochondrial malate dehydrogenase lowers leaf respiration and alters photorespiration and plant growth in Arabidopsis.
Tomaz T, Bagard M, Pracharoenwattana I, Lindén P, Lee CP, Carroll AJ, Ströher E, Smith SM, Gardeström P, Millar AH., Plant Physiol 154(3), 2010
PMID: 20876337
Reverse genetics in eukaryotes.
Hardy S, Legagneux V, Audic Y, Paillard L., Biol Cell 102(10), 2010
PMID: 20812916
The Arabidopsis Botrytis Susceptible1 Interactor defines a subclass of RING E3 ligases that regulate pathogen and stress responses.
Luo H, Laluk K, Lai Z, Veronese P, Song F, Mengiste T., Plant Physiol 154(4), 2010
PMID: 20921156
The Arabidopsis thylakoid protein PAM68 is required for efficient D1 biogenesis and photosystem II assembly.
Armbruster U, Zühlke J, Rengstl B, Kreller R, Makarenko E, Rühle T, Schünemann D, Jahns P, Weisshaar B, Nickelsen J, Leister D., Plant Cell 22(10), 2010
PMID: 20923938
RAD5A, RECQ4A, and MUS81 have specific functions in homologous recombination and define different pathways of DNA repair in Arabidopsis thaliana.
Mannuss A, Dukowic-Schulze S, Suer S, Hartung F, Pacher M, Puchta H., Plant Cell 22(10), 2010
PMID: 20971895
Herbivore-induced and floral homoterpene volatiles are biosynthesized by a single P450 enzyme (CYP82G1) in Arabidopsis.
Lee S, Badieyan S, Bevan DR, Herde M, Gatz C, Tholl D., Proc Natl Acad Sci U S A 107(49), 2010
PMID: 21088219
TCP transcription factors regulate the activities of ASYMMETRIC LEAVES1 and miR164, as well as the auxin response, during differentiation of leaves in Arabidopsis.
Koyama T, Mitsuda N, Seki M, Shinozaki K, Ohme-Takagi M., Plant Cell 22(11), 2010
PMID: 21119060
LAP6/POLYKETIDE SYNTHASE A and LAP5/POLYKETIDE SYNTHASE B encode hydroxyalkyl α-pyrone synthases required for pollen development and sporopollenin biosynthesis in Arabidopsis thaliana.
Kim SS, Grienenberger E, Lallemand B, Colpitts CC, Kim SY, Souza Cde A, Geoffroy P, Heintz D, Krahn D, Kaiser M, Kombrink E, Heitz T, Suh DY, Legrand M, Douglas CJ., Plant Cell 22(12), 2010
PMID: 21193570
Analysis of TETRAKETIDE α-PYRONE REDUCTASE function in Arabidopsis thaliana reveals a previously unknown, but conserved, biochemical pathway in sporopollenin monomer biosynthesis.
Grienenberger E, Kim SS, Lallemand B, Geoffroy P, Heintz D, Souza Cde A, Heitz T, Douglas CJ, Legrand M., Plant Cell 22(12), 2010
PMID: 21193572
Highly boron deficiency-tolerant plants generated by enhanced expression of NIP5;1, a boric acid channel.
Kato Y, Miwa K, Takano J, Wada M, Fujiwara T., Plant Cell Physiol 50(1), 2009
PMID: 19017629
Identification of two Arabidopsis genes encoding a peroxisomal oxidoreductase-like protein and an acyl-CoA synthetase-like protein that are required for responses to pro-auxins.
Wiszniewski AA, Zhou W, Smith SM, Bussell JD., Plant Mol Biol 69(5), 2009
PMID: 19043666
AtAMT1;4, a pollen-specific high-affinity ammonium transporter of the plasma membrane in Arabidopsis.
Yuan L, Graff L, Loqué D, Kojima S, Tsuchiya YN, Takahashi H, von Wirén N., Plant Cell Physiol 50(1), 2009
PMID: 19073648
Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II.
Ream TS, Haag JR, Wierzbicki AT, Nicora CD, Norbeck AD, Zhu JK, Hagen G, Guilfoyle TJ, Pasa-Tolić L, Pikaard CS., Mol Cell 33(2), 2009
PMID: 19110459
Genetic technologies for the identification of plant genes controlling environmental stress responses
Papdi Csaba, Joseph MaryPrathiba, Salamó ImmaPérez, Vidal Sabina, Szabados László., Funct Plant Biol 36(8), 2009
PMID: IND44235750
BTB and TAZ domain scaffold proteins perform a crucial function in Arabidopsis development.
Robert HS, Quint A, Brand D, Vivian-Smith A, Offringa R., Plant J 58(1), 2009
PMID: 19054356
STARCH-EXCESS4 is a laforin-like Phosphoglucan phosphatase required for starch degradation in Arabidopsis thaliana.
Kötting O, Santelia D, Edner C, Eicke S, Marthaler T, Gentry MS, Comparot-Moss S, Chen J, Smith AM, Steup M, Ritte G, Zeeman SC., Plant Cell 21(1), 2009
PMID: 19141707
ARABIDOPSIS DEHISCENCE ZONE POLYGALACTURONASE1 (ADPG1), ADPG2, and QUARTET2 are Polygalacturonases required for cell separation during reproductive development in Arabidopsis.
Ogawa M, Kay P, Wilson S, Swain SM., Plant Cell 21(1), 2009
PMID: 19168715
Chlorophyll limitation in plants remodels and balances the photosynthetic apparatus by changing the accumulation of photosystems I and II through two different approaches
Hansson A, Jensen PE., Physiol Plant 135(2), 2009
PMID: IND44153017
A novel ATM-dependent X-ray-inducible gene is essential for both plant meiosis and gametogenesis.
Dean PJ, Siwiec T, Waterworth WM, Schlögelhofer P, Armstrong SJ, West CE., Plant J 58(5), 2009
PMID: 19187040
GASA5, a regulator of flowering time and stem growth in Arabidopsis thaliana.
Zhang S, Yang C, Peng J, Sun S, Wang X., Plant Mol Biol 69(6), 2009
PMID: 19190987
cpFBPaseII, a novel redox-independent chloroplastic isoform of fructose-1,6-bisphosphatase.
Serrato AJ, Yubero-Serrano EM, Sandalio LM, Muñoz-Blanco J, Chueca A, Caballero JL, Sahrawy M., Plant Cell Environ 32(7), 2009
PMID: 19220782
The Rab GTPase RabA4d regulates pollen tube tip growth in Arabidopsis thaliana.
Szumlanski AL, Nielsen E., Plant Cell 21(2), 2009
PMID: 19208902
Inactivation of genes, encoding tocopherol biosynthetic pathway enzymes, results in oxidative stress in outdoor grown Arabidopsis thaliana.
Semchuk NM, Lushchak OV, Falk J, Krupinska K, Lushchak VI., Plant Physiol Biochem 47(5), 2009
PMID: 19264498
Protocol: Streamlined sub-protocols for floral-dip transformation and selection of transformants in Arabidopsis thaliana.
Davis AM, Hall A, Millar AJ, Darrah C, Davis SJ., Plant Methods 5(), 2009
PMID: 19250520
Studies on rice seed quality through analysis of a large-scale T-DNA insertion population.
Fu FF, Ye R, Xu SP, Xue HW., Cell Res 19(3), 2009
PMID: 19223856
Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance.
Doherty CJ, Van Buskirk HA, Myers SJ, Thomashow MF., Plant Cell 21(3), 2009
PMID: 19270186
The Arabidopsis RING finger E3 ligase RHA2a is a novel positive regulator of abscisic acid signaling during seed germination and early seedling development.
Bu Q, Li H, Zhao Q, Jiang H, Zhai Q, Zhang J, Wu X, Sun J, Xie Q, Wang D, Li C., Plant Physiol 150(1), 2009
PMID: 19286935
Pheophytin pheophorbide hydrolase (pheophytinase) is involved in chlorophyll breakdown during leaf senescence in Arabidopsis.
Schelbert S, Aubry S, Burla B, Agne B, Kessler F, Krupinska K, Hörtensteiner S., Plant Cell 21(3), 2009
PMID: 19304936
A single vegetative actin isovariant overexpressed under the control of multiple regulatory sequences is sufficient for normal Arabidopsis development.
Kandasamy MK, McKinney EC, Meagher RB., Plant Cell 21(3), 2009
PMID: 19304937
A non-canonical transferred DNA insertion at the BRI1 locus in Arabidopsis thaliana.
Zhao Z, Zhu Y, Erhardt M, Ruan Y, Shen WH., J Integr Plant Biol 51(4), 2009
PMID: 19341406
Loss of chloroplast protease SPPA function alters high light acclimation processes in Arabidopsis thaliana L. (Heynh.).
Wetzel CM, Harmacek LD, Yuan LH, Wopereis JL, Chubb R, Turini P., J Exp Bot 60(6), 2009
PMID: 19349419
A transformation booster sequence (TBS) from Petunia hybrida functions as an enhancer-blocking insulator in Arabidopsis thaliana.
Hily JM, Singer SD, Yang Y, Liu Z., Plant Cell Rep 28(7), 2009
PMID: 19373469
The signaling peptide EPF2 controls asymmetric cell divisions during stomatal development.
Hunt L, Gray JE., Curr Biol 19(10), 2009
PMID: 19398336
A comparative genomics approach identifies a PPR-DYW protein that is essential for C-to-U editing of the Arabidopsis chloroplast accD transcript.
Robbins JC, Heller WP, Hanson MR., RNA 15(6), 2009
PMID: 19395655
A functional analysis of the pyrimidine catabolic pathway in Arabidopsis.
Zrenner R, Riegler H, Marquard CR, Lange PR, Geserick C, Bartosz CE, Chen CT, Slocum RD., New Phytol 183(1), 2009
PMID: 19413687
Characterization of full-length enriched expressed sequence tags of dehydration-treated white fibrous roots of sweetpotato.
Kim SH, Song WK, Kim YH, Kwon SY, Lee HS, Lee IC, Kwak SS., BMB Rep 42(5), 2009
PMID: 19470240
Arabidopsis mutants carrying chimeric sigma factor genes reveal regulatory determinants for plastid gene expression.
Schweer J, Geimer S, Meurer J, Link G., Plant Cell Physiol 50(7), 2009
PMID: 19439445
The role of annexin 1 in drought stress in Arabidopsis.
Konopka-Postupolska D, Clark G, Goch G, Debski J, Debski J, Floras K, Cantero A, Fijolek B, Roux S, Hennig J., Plant Physiol 150(3), 2009
PMID: 19482919
Phenome analysis in plant species using loss-of-function and gain-of-function mutants.
Kuromori T, Takahashi S, Kondou Y, Shinozaki K, Matsui M., Plant Cell Physiol 50(7), 2009
PMID: 19502383
Cohesin gene defects may impair sister chromatid alignment and genome stability in Arabidopsis thaliana.
Schubert V, Weissleder A, Ali H, Fuchs J, Lermontova I, Meister A, Schubert I., Chromosoma 118(5), 2009
PMID: 19533160
Three Arabidopsis SnRK2 protein kinases, SRK2D/SnRK2.2, SRK2E/SnRK2.6/OST1 and SRK2I/SnRK2.3, involved in ABA signaling are essential for the control of seed development and dormancy.
Nakashima K, Fujita Y, Kanamori N, Katagiri T, Umezawa T, Kidokoro S, Maruyama K, Yoshida T, Ishiyama K, Kobayashi M, Shinozaki K, Yamaguchi-Shinozaki K., Plant Cell Physiol 50(7), 2009
PMID: 19541597
AINTEGUMENTA and AINTEGUMENTA-LIKE6 act redundantly to regulate Arabidopsis floral growth and patterning.
Krizek B., Plant Physiol 150(4), 2009
PMID: 19542297
Arabidopsis DOF transcription factors act redundantly to reduce CONSTANS expression and are essential for a photoperiodic flowering response.
Fornara F, Panigrahi KC, Gissot L, Sauerbrunn N, Rühl M, Jarillo JA, Coupland G., Dev Cell 17(1), 2009
PMID: 19619493
Arabidopsis thaliana encodes a bacterial-type heterodimeric isopropylmalate isomerase involved in both Leu biosynthesis and the Met chain elongation pathway of glucosinolate formation.
Knill T, Reichelt M, Paetz C, Gershenzon J, Binder S., Plant Mol Biol 71(3), 2009
PMID: 19597944
Arabidopsis tRNA adenosine deaminase arginine edits the wobble nucleotide of chloroplast tRNAArg(ACG) and is essential for efficient chloroplast translation.
Delannoy E, Le Ret M, Faivre-Nitschke E, Estavillo GM, Bergdoll M, Taylor NL, Pogson BJ, Small I, Imbault P, Gualberto JM., Plant Cell 21(7), 2009
PMID: 19602623
The Arabidopsis MCM2 gene is essential to embryo development and its over-expression alters root meristem function.
Ni DA, Sozzani R, Blanchet S, Domenichini S, Reuzeau C, Cella R, Bergounioux C, Raynaud C., New Phytol 184(2), 2009
PMID: 19650778
Genetic and spatial interactions between FT, TSF and SVP during the early stages of floral induction in Arabidopsis.
Jang S, Torti S, Coupland G., Plant J 60(4), 2009
PMID: 19656342
AtObgC, a plant ortholog of bacterial Obg, is a chloroplast-targeting GTPase essential for early embryogenesis.
Bang WY, Hata A, Jeong IS, Umeda T, Masuda T, Chen J, Yoko I, Suwastika IN, Kim DW, Im CH, Lee BH, Lee Y, Lee KW, Shiina T, Bahk JD., Plant Mol Biol 71(4-5), 2009
PMID: 19636801
Starch granule initiation in Arabidopsis requires the presence of either class IV or class III starch synthases.
Szydlowski N, Ragel P, Raynaud S, Lucas MM, Roldán I, Montero M, Muñoz FJ, Ovecka M, Bahaji A, Planchot V, Pozueta-Romero J, D'Hulst C, Mérida A., Plant Cell 21(8), 2009
PMID: 19666739
CNI1/ATL31, a RING-type ubiquitin ligase that functions in the carbon/nitrogen response for growth phase transition in Arabidopsis seedlings.
Sato T, Maekawa S, Yasuda S, Sonoda Y, Katoh E, Ichikawa T, Nakazawa M, Seki M, Shinozaki K, Matsui M, Goto DB, Ikeda A, Yamaguchi J., Plant J 60(5), 2009
PMID: 19702666
Coordination of plastid protein import and nuclear gene expression by plastid-to-nucleus retrograde signaling.
Kakizaki T, Matsumura H, Nakayama K, Che FS, Terauchi R, Inaba T., Plant Physiol 151(3), 2009
PMID: 19726569
Arabidopsis FtsZ2-1 and FtsZ2-2 are functionally redundant, but FtsZ-based plastid division is not essential for chloroplast partitioning or plant growth and development.
Schmitz AJ, Glynn JM, Olson BJ, Stokes KD, Osteryoung KW., Mol Plant 2(6), 2009
PMID: 19995726
Phage-type RNA polymerase RPOTmp performs gene-specific transcription in mitochondria of Arabidopsis thaliana.
Kühn K, Richter U, Meyer EH, Delannoy E, de Longevialle AF, O'Toole N, Börner T, Millar AH, Small ID, Whelan J., Plant Cell 21(9), 2009
PMID: 19783760
OWL1: an Arabidopsis J-domain protein involved in perception of very low light fluences.
Kneissl J, Wachtler V, Chua NH, Bolle C., Plant Cell 21(10), 2009
PMID: 19808946
Integrating the genetic and physical maps of Arabidopsis thaliana: identification of mapped alleles of cloned essential (EMB) genes.
Meinke D, Sweeney C, Muralla R., PLoS One 4(10), 2009
PMID: 19812694
In vivo studies on the roles of Tic55-related proteins in chloroplast protein import in Arabidopsis thaliana.
Boij P, Patel R, Garcia C, Jarvis P, Aronsson H., Mol Plant 2(6), 2009
PMID: 19995737
Eukaryotic GCP1 is a conserved mitochondrial protein required for progression of embryo development beyond the globular stage in Arabidopsis thaliana.
Haussuehl K, Huesgen PF, Meier M, Dessi P, Glaser E, Adamski J, Adamska I., Biochem J 423(3), 2009
PMID: 19694617
ARABIDOPSIS TRITHORAX-RELATED7 is required for methylation of lysine 4 of histone H3 and for transcriptional activation of FLOWERING LOCUS C.
Tamada Y, Yun JY, Woo SC, Amasino RM., Plant Cell 21(10), 2009
PMID: 19855050
Genome-wide identification, structure and expression studies, and mutant collection of 22 early nodulin-like protein genes in Arabidopsis.
Mashiguchi K, Asami T, Suzuki Y., Biosci Biotechnol Biochem 73(11), 2009
PMID: 19897921
Members of the LBD family of transcription factors repress anthocyanin synthesis and affect additional nitrogen responses in Arabidopsis.
Rubin G, Tohge T, Matsuda F, Saito K, Scheible WR., Plant Cell 21(11), 2009
PMID: 19933203
A high-density collection of EMS-induced mutations for TILLING in Landsberg erecta genetic background of Arabidopsis.
Martín B, Ramiro M, Martínez-Zapater JM, Alonso-Blanco C., BMC Plant Biol 9(), 2009
PMID: 20003424
The D-type cyclin CYCD4;1 modulates lateral root density in Arabidopsis by affecting the basal meristem region.
Nieuwland J, Maughan S, Dewitte W, Scofield S, Sanz L, Murray JA., Proc Natl Acad Sci U S A 106(52), 2009
PMID: 20018777
Arabidopsis Tic62 and ferredoxin-NADP(H) oxidoreductase form light-regulated complexes that are integrated into the chloroplast redox poise.
Benz JP, Stengel A, Lintala M, Lee YH, Weber A, Philippar K, Gügel IL, Kaieda S, Ikegami T, Mulo P, Soll J, Bölter B., Plant Cell 21(12), 2009
PMID: 20040542
Duplicated P5CS genes of Arabidopsis play distinct roles in stress regulation and developmental control of proline biosynthesis.
Székely G, Abrahám E, Cséplo A, Rigó G, Zsigmond L, Csiszár J, Ayaydin F, Strizhov N, Jásik J, Schmelzer E, Koncz C, Szabados L., Plant J 53(1), 2008
PMID: 17971042
Arabidopsis extra-large G proteins (XLGs) regulate root morphogenesis.
Ding L, Pandey S, Assmann SM., Plant J 53(2), 2008
PMID: 17999646
Degradation of the cyclin-dependent kinase inhibitor KRP1 is regulated by two different ubiquitin E3 ligases.
Ren H, Santner A, del Pozo JC, Murray JA, Estelle M., Plant J 53(5), 2008
PMID: 18005227
PHYTOCHROME KINASE SUBSTRATE1 regulates root phototropism and gravitropism.
Boccalandro HE, De Simone SN, Bergmann-Honsberger A, Schepens I, Fankhauser C, Casal JJ., Plant Physiol 146(1), 2008
PMID: 18024556
Redirection of the phenylpropanoid pathway to feruloyl malate in Arabidopsis mutants deficient for cinnamoyl-CoA reductase 1.
Mir Derikvand M, Sierra JB, Ruel K, Pollet B, Do CT, Thévenin J, Buffard D, Jouanin L, Lapierre C., Planta 227(5), 2008
PMID: 18046574
The gibberellin biosynthetic genes AtGA20ox1 and AtGA20ox2 act, partially redundantly, to promote growth and development throughout the Arabidopsis life cycle.
Rieu I, Ruiz-Rivero O, Fernandez-Garcia N, Griffiths J, Powers SJ, Gong F, Linhartova T, Eriksson S, Nilsson O, Thomas SG, Phillips AL, Hedden P., Plant J 53(3), 2008
PMID: 18069939
Restricting glutathione biosynthesis to the cytosol is sufficient for normal plant development.
Pasternak M, Lim B, Wirtz M, Hell R, Cobbett CS, Meyer AJ., Plant J 53(6), 2008
PMID: 18088327
Functions of chloroplastic adenylate kinases in Arabidopsis.
Lange PR, Geserick C, Tischendorf G, Zrenner R., Plant Physiol 146(2), 2008
PMID: 18162585
Arabidopsis branched-chain aminotransferase 3 functions in both amino acid and glucosinolate biosynthesis.
Knill T, Schuster J, Reichelt M, Gershenzon J, Binder S., Plant Physiol 146(3), 2008
PMID: 18162591
Systems approaches to identifying gene regulatory networks in plants.
Long TA, Brady SM, Benfey PN., Annu Rev Cell Dev Biol 24(), 2008
PMID: 18616425
The OSU1/QUA2/TSD2-encoded putative methyltransferase is a critical modulator of carbon and nitrogen nutrient balance response in Arabidopsis.
Gao P, Xin Z, Zheng ZL., PLoS One 3(1), 2008
PMID: 18167546
Functional analysis of an Arabidopsis heat-shock transcription factor HsfA3 in the transcriptional cascade downstream of the DREB2A stress-regulatory system.
Yoshida T, Sakuma Y, Todaka D, Maruyama K, Qin F, Mizoi J, Kidokoro S, Fujita Y, Shinozaki K, Yamaguchi-Shinozaki K., Biochem Biophys Res Commun 368(3), 2008
PMID: 18261981
A subtilisin-like serine protease essential for mucilage release from Arabidopsis seed coats.
Rautengarten C, Usadel B, Neumetzler L, Hartmann J, Büssis D, Altmann T., Plant J 54(3), 2008
PMID: 18266922
A LysM receptor-like kinase plays a critical role in chitin signaling and fungal resistance in Arabidopsis.
Wan J, Zhang XC, Neece D, Ramonell KM, Clough S, Kim SY, Stacey MG, Stacey G., Plant Cell 20(2), 2008
PMID: 18263776
Degradation of a polyadenylated rRNA maturation by-product involves one of the three RRP6-like proteins in Arabidopsis thaliana.
Lange H, Holec S, Cognat V, Pieuchot L, Le Ret M, Canaday J, Gagliardi D., Mol Cell Biol 28(9), 2008
PMID: 18285452
Dual function of Arabidopsis glucan synthase-like genes GSL8 and GSL10 in male gametophyte development and plant growth.
Töller A, Brownfield L, Neu C, Twell D, Schulze-Lefert P., Plant J 54(5), 2008
PMID: 18315544
The Arabidopsis thaliana type I Isopentenyl Diphosphate Isomerases are targeted to multiple subcellular compartments and have overlapping functions in isoprenoid biosynthesis.
Phillips MA, D'Auria JC, Gershenzon J, Pichersky E., Plant Cell 20(3), 2008
PMID: 18319397
Light regulation of CaS, a novel phosphoprotein in the thylakoid membrane of Arabidopsis thaliana.
Vainonen JP, Sakuragi Y, Stael S, Tikkanen M, Allahverdiyeva Y, Paakkarinen V, Aro E, Suorsa M, Scheller HV, Vener AV, Aro EM., FEBS J 275(8), 2008
PMID: 18331354
Cell wall modifications in Arabidopsis plants with altered alpha-L-arabinofuranosidase activity.
Chávez Montes RA, Ranocha P, Martinez Y, Minic Z, Jouanin L, Marquis M, Saulnier L, Fulton LM, Cobbett CS, Bitton F, Renou JP, Jauneau A, Goffner D., Plant Physiol 147(1), 2008
PMID: 18344421
RLM3, a TIR domain encoding gene involved in broad-range immunity of Arabidopsis to necrotrophic fungal pathogens.
Staal J, Kaliff M, Dewaele E, Persson M, Dixelius C., Plant J 55(2), 2008
PMID: 18397376
Deletion of the chloroplast-localized AtTerC gene product in Arabidopsis thaliana leads to loss of the thylakoid membrane and to seedling lethality.
Kwon KC, Cho MH., Plant J 55(3), 2008
PMID: 18429937
A genome-wide functional investigation into the roles of receptor-like proteins in Arabidopsis.
Wang G, Ellendorff U, Kemp B, Mansfield JW, Forsyth A, Mitchell K, Bastas K, Liu CM, Woods-Tör A, Zipfel C, de Wit PJ, Jones JD, Tör M, Thomma BP., Plant Physiol 147(2), 2008
PMID: 18434605
AtCYP38 ensures early biogenesis, correct assembly and sustenance of photosystem II.
Sirpiö S, Khrouchtchova A, Allahverdiyeva Y, Hansson M, Fristedt R, Vener AV, Scheller HV, Jensen PE, Haldrup A, Aro EM., Plant J 55(4), 2008
PMID: 18445132
Ggamma1 + Ggamma2 not equal to Gbeta: heterotrimeric G protein Ggamma-deficient mutants do not recapitulate all phenotypes of Gbeta-deficient mutants.
Trusov Y, Zhang W, Assmann SM, Botella JR., Plant Physiol 147(2), 2008
PMID: 18441222
Functional analysis of a predicted flavonol synthase gene family in Arabidopsis.
Owens DK, Alerding AB, Crosby KC, Bandara AB, Westwood JH, Winkel BS., Plant Physiol 147(3), 2008
PMID: 18467451
An exocyst complex functions in plant cell growth in Arabidopsis and tobacco.
Hála M, Cole R, Synek L, Drdová E, Pecenková T, Nordheim A, Lamkemeyer T, Madlung J, Hochholdinger F, Fowler JE, Zárský V., Plant Cell 20(5), 2008
PMID: 18492870
Domain II mutations in CRANE/IAA18 suppress lateral root formation and affect shoot development in Arabidopsis thaliana.
Uehara T, Okushima Y, Mimura T, Tasaka M, Fukaki H., Plant Cell Physiol 49(7), 2008
PMID: 18505759
A 125 kDa RNase E/G-like protein is present in plastids and is essential for chloroplast development and autotrophic growth in Arabidopsis.
Mudd EA, Sullivan S, Gisby MF, Mironov A, Kwon CS, Chung WI, Day A., J Exp Bot 59(10), 2008
PMID: 18515828
Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana.
Laubinger S, Sachsenberg T, Zeller G, Busch W, Lohmann JU, Rätsch G, Weigel D., Proc Natl Acad Sci U S A 105(25), 2008
PMID: 18550839
RETARDED GROWTH OF EMBRYO1, a new basic helix-loop-helix protein, expresses in endosperm to control embryo growth.
Kondou Y, Nakazawa M, Kawashima M, Ichikawa T, Yoshizumi T, Suzuki K, Ishikawa A, Koshi T, Matsui R, Muto S, Matsui M., Plant Physiol 147(4), 2008
PMID: 18567831
Arabidopsis XXT5 gene encodes a putative alpha-1,6-xylosyltransferase that is involved in xyloglucan biosynthesis.
Zabotina OA, van de Ven WT, Freshour G, Drakakaki G, Cavalier D, Mouille G, Hahn MG, Keegstra K, Raikhel NV., Plant J 56(1), 2008
PMID: 18557833
Involvement of sphingosine kinase in plant cell signalling.
Worrall D, Liang YK, Alvarez S, Holroyd GH, Spiegel S, Panagopulos M, Gray JE, Hetherington AM., Plant J 56(1), 2008
PMID: 18557834
Two distinct interacting classes of nuclear envelope-associated coiled-coil proteins are required for the tissue-specific nuclear envelope targeting of Arabidopsis RanGAP.
Zhao Q, Brkljacic J, Meier I., Plant Cell 20(6), 2008
PMID: 18591351
AGL61 interacts with AGL80 and is required for central cell development in Arabidopsis.
Steffen JG, Kang IH, Portereiko MF, Lloyd A, Drews GN., Plant Physiol 148(1), 2008
PMID: 18599653
Getting the most out of publicly available T-DNA insertion lines.
Ulker B, Peiter E, Dixon DP, Moffat C, Capper R, Bouché N, Edwards R, Sanders D, Knight H, Knight MR., Plant J 56(4), 2008
PMID: 18644000
Articulation of three core metabolic processes in Arabidopsis: fatty acid biosynthesis, leucine catabolism and starch metabolism.
Mentzen WI, Peng J, Ransom N, Nikolau BJ, Wurtele ES., BMC Plant Biol 8(), 2008
PMID: 18616834
The Omp85-related chloroplast outer envelope protein OEP80 is essential for viability in Arabidopsis.
Patel R, Hsu SC, Bédard J, Inoue K, Jarvis P., Plant Physiol 148(1), 2008
PMID: 18621981
NADPH-dependent thioredoxin reductase and 2-Cys peroxiredoxins are needed for the protection of Mg-protoporphyrin monomethyl ester cyclase.
Stenbaek A, Hansson A, Wulff RP, Hansson M, Dietz KJ, Jensen PE., FEBS Lett 582(18), 2008
PMID: 18625226
Identification and characterization of Cor413im proteins as novel components of the chloroplast inner envelope.
Okawa K, Nakayama K, Kakizaki T, Yamashita T, Inaba T., Plant Cell Environ 31(10), 2008
PMID: 18643950
ScORK17, a transmembrane receptor-like kinase predominantly expressed in ovules is involved in seed development.
Germain H, Gray-Mitsumune M, Lafleur E, Matton DP., Planta 228(5), 2008
PMID: 18649087
Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR KINASE proteins serve brassinosteroid-dependent and -independent signaling pathways.
Albrecht C, Russinova E, Kemmerling B, Kwaaitaal M, de Vries SC., Plant Physiol 148(1), 2008
PMID: 18667726
Root uptake of cationic amino acids by Arabidopsis depends on functional expression of amino acid permease 5.
Svennerstam H, Ganeteg U, Näsholm T., New Phytol 180(3), 2008
PMID: 18681934
The MADS domain protein DIANA acts together with AGAMOUS-LIKE80 to specify the central cell in Arabidopsis ovules.
Bemer M, Wolters-Arts M, Grossniklaus U, Angenent GC., Plant Cell 20(8), 2008
PMID: 18713950
Sex-biased lethality or transmission of defective transcription machinery in Arabidopsis.
Onodera Y, Nakagawa K, Haag JR, Pikaard D, Mikami T, Ream T, Ito Y, Pikaard CS., Genetics 180(1), 2008
PMID: 18723889
T-DNA-mediated transfer of Agrobacterium tumefaciens chromosomal DNA into plants.
Ulker B, Li Y, Rosso MG, Logemann E, Somssich IE, Weisshaar B., Nat Biotechnol 26(9), 2008
PMID: 18758448
Transcriptional profiling of mature Arabidopsis trichomes reveals that NOECK encodes the MIXTA-like transcriptional regulator MYB106.
Jakoby MJ, Falkenhan D, Mader MT, Brininstool G, Wischnitzki E, Platz N, Hudson A, Hülskamp M, Larkin J, Schnittger A., Plant Physiol 148(3), 2008
PMID: 18805951
Genetic analysis reveals that C19-GA 2-oxidation is a major gibberellin inactivation pathway in Arabidopsis.
Rieu I, Eriksson S, Powers SJ, Gong F, Griffiths J, Woolley L, Benlloch R, Nilsson O, Thomas SG, Hedden P, Phillips AL., Plant Cell 20(9), 2008
PMID: 18805991
Overexpression of Arabidopsis sorting nexin AtSNX2b inhibits endocytic trafficking to the vacuole.
Phan NQ, Kim SJ, Bassham DC., Mol Plant 1(6), 2008
PMID: 19825596
A small subfamily of Arabidopsis RADIALIS-LIKE SANT/MYB genes: a link to HOOKLESS1-mediated signal transduction during early morphogenesis.
Hamaguchi A, Yamashino T, Koizumi N, Kiba T, Kiba T, Kojima M, Sakakibara H, Mizuno T., Biosci Biotechnol Biochem 72(10), 2008
PMID: 18838801
Identification and characterization of ADNT1, a novel mitochondrial adenine nucleotide transporter from Arabidopsis.
Palmieri L, Santoro A, Carrari F, Blanco E, Nunes-Nesi A, Arrigoni R, Genchi F, Fernie AR, Palmieri F., Plant Physiol 148(4), 2008
PMID: 18923018
Web-based Arabidopsis functional and structural genomics resources.
Lu Y, Last RL., Arabidopsis Book 6(), 2008
PMID: 22303243
A SNARE complex unique to seed plants is required for protein storage vacuole biogenesis and seed development of Arabidopsis thaliana.
Ebine K, Okatani Y, Uemura T, Goh T, Shoda K, Niihama M, Morita MT, Spitzer C, Otegui MS, Nakano A, Ueda T., Plant Cell 20(11), 2008
PMID: 18984676
A heterocomplex of iron superoxide dismutases defends chloroplast nucleoids against oxidative stress and is essential for chloroplast development in Arabidopsis.
Myouga F, Hosoda C, Umezawa T, Iizumi H, Kuromori T, Motohashi R, Shono Y, Nagata N, Ikeuchi M, Shinozaki K., Plant Cell 20(11), 2008
PMID: 18996978
Arabidopsis bZIP60 is a proteolysis-activated transcription factor involved in the endoplasmic reticulum stress response.
Iwata Y, Fedoroff NV, Koizumi N., Plant Cell 20(11), 2008
PMID: 19017746
The MYST histone acetyltransferases are essential for gametophyte development in Arabidopsis.
Latrasse D, Benhamed M, Henry Y, Domenichini S, Kim W, Zhou DX, Delarue M., BMC Plant Biol 8(), 2008
PMID: 19040736
Topoisomerase 3alpha and RMI1 suppress somatic crossovers and are essential for resolution of meiotic recombination intermediates in Arabidopsis thaliana.
Hartung F, Suer S, Knoll A, Wurz-Wildersinn R, Puchta H., PLoS Genet 4(12), 2008
PMID: 19096507
A critical assessment of Agrobacterium tumefaciens-mediated transformation as a tool for pathogenicity gene discovery in the phytopathogenic fungus Leptosphaeria maculans.
Blaise F, Rémy E, Meyer M, Zhou L, Narcy JP, Roux J, Balesdent MH, Rouxel T., Fungal Genet Biol 44(2), 2007
PMID: 16979359
Aconitase plays a role in regulating resistance to oxidative stress and cell death in Arabidopsis and Nicotiana benthamiana.
Moeder W, Del Pozo O, Navarre DA, Martin GB, Klessig DF., Plant Mol Biol 63(2), 2007
PMID: 17013749
GABI-Kat SimpleSearch: an Arabidopsis thaliana T-DNA mutant database with detailed information for confirmed insertions.
Li Y, Rosso MG, Viehoever P, Weisshaar B., Nucleic Acids Res 35(database issue), 2007
PMID: 17062622
A heat-inducible transcription factor, HsfA2, is required for extension of acquired thermotolerance in Arabidopsis.
Charng YY, Liu HC, Liu NY, Chi WT, Wang CN, Chang SH, Wang TT., Plant Physiol 143(1), 2007
PMID: 17085506
The WiscDsLox T-DNA collection: an arabidopsis community resource generated by using an improved high-throughput T-DNA sequencing pipeline.
Woody ST, Austin-Phillips S, Amasino RM, Krysan PJ., J Plant Res 120(1), 2007
PMID: 17186119
The phenotype of soluble starch synthase IV defective mutants of Arabidopsis thaliana suggests a novel function of elongation enzymes in the control of starch granule formation.
Roldán I, Wattebled F, Mercedes Lucas M, Delvallé D, Planchot V, Jiménez S, Pérez R, Ball S, D'Hulst C, Mérida A., Plant J 49(3), 2007
PMID: 17217470
An early nodulin-like protein accumulates in the sieve element plasma membrane of Arabidopsis.
Khan JA, Wang Q, Sjölund RD, Schulz A, Thompson GA., Plant Physiol 143(4), 2007
PMID: 17293437
Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds.
Aguilar-Martínez JA, Poza-Carrión C, Cubas P., Plant Cell 19(2), 2007
PMID: 17307924
Identification of two protein kinases required for abscisic acid regulation of seed germination, root growth, and gene expression in Arabidopsis.
Fujii H, Verslues PE, Zhu JK., Plant Cell 19(2), 2007
PMID: 17307925
The WRKY70 transcription factor of Arabidopsis influences both the plant senescence and defense signaling pathways.
Ulker B, Shahid Mukhtar M, Somssich IE., Planta 226(1), 2007
PMID: 17310369
The absence of histone H2B monoubiquitination in the Arabidopsis hub1 (rdo4) mutant reveals a role for chromatin remodeling in seed dormancy.
Liu Y, Koornneef M, Soppe WJ., Plant Cell 19(2), 2007
PMID: 17329563
The Arabidopsis thaliana homolog of yeast BRE1 has a function in cell cycle regulation during early leaf and root growth.
Fleury D, Himanen K, Cnops G, Nelissen H, Boccardi TM, Maere S, Beemster GT, Neyt P, Anami S, Robles P, Micol JL, Inzé D, Van Lijsebettens M., Plant Cell 19(2), 2007
PMID: 17329565
PIC1, an ancient permease in Arabidopsis chloroplasts, mediates iron transport.
Duy D, Wanner G, Meda AR, von Wirén N, Soll J, Philippar K., Plant Cell 19(3), 2007
PMID: 17337631
A core subunit of the RNA-processing/degrading exosome specifically influences cuticular wax biosynthesis in Arabidopsis.
Hooker TS, Lam P, Zheng H, Kunst L., Plant Cell 19(3), 2007
PMID: 17351114
TERMINAL FLOWER1 is a mobile signal controlling Arabidopsis architecture.
Conti L, Bradley D., Plant Cell 19(3), 2007
PMID: 17369370
Genetic interactions of TGA transcription factors in the regulation of pathogenesis-related genes and disease resistance in Arabidopsis.
Kesarwani M, Yoo J, Dong X., Plant Physiol 144(1), 2007
PMID: 17369431
Further in vivo studies on the role of the molecular chaperone, Hsp93, in plastid protein import.
Kovacheva S, Bédard J, Wardle A, Patel R, Jarvis P., Plant J 50(2), 2007
PMID: 17376159
Arabidopsis peroxisomal malate dehydrogenase functions in beta-oxidation but not in the glyoxylate cycle.
Pracharoenwattana I, Cornah JE, Smith SM., Plant J 50(3), 2007
PMID: 17376163
A permeable cuticle in Arabidopsis leads to a strong resistance to Botrytis cinerea.
Bessire M, Chassot C, Jacquat AC, Humphry M, Borel S, Petétot JM, Métraux JP, Nawrath C., EMBO J 26(8), 2007
PMID: 17396154
Molecular characterisation of the STRUBBELIG-RECEPTOR FAMILY of genes encoding putative leucine-rich repeat receptor-like kinases in Arabidopsis thaliana.
Eyüboglu B, Pfister K, Haberer G, Chevalier D, Fuchs A, Mayer KF, Schneitz K., BMC Plant Biol 7(), 2007
PMID: 17397538
Sulphite oxidase as key enzyme for protecting plants against sulphur dioxide.
Lang C, Popko J, Wirtz M, Hell R, Herschbach C, Kreuzwieser J, Rennenberg H, Mendel RR, Hänsch R., Plant Cell Environ 30(4), 2007
PMID: 17324231
Differential regulation of closely related R2R3-MYB transcription factors controls flavonol accumulation in different parts of the Arabidopsis thaliana seedling.
Stracke R, Ishihara H, Huep G, Barsch A, Mehrtens F, Niehaus K, Weisshaar B., Plant J 50(4), 2007
PMID: 17419845
The DELLA domain of GA INSENSITIVE mediates the interaction with the GA INSENSITIVE DWARF1A gibberellin receptor of Arabidopsis.
Willige BC, Ghosh S, Nill C, Zourelidou M, Dohmann EM, Maier A, Schwechheimer C., Plant Cell 19(4), 2007
PMID: 17416730
Homogalacturonan synthesis in Arabidopsis thaliana requires a Golgi-localized protein with a putative methyltransferase domain.
Mouille G, Ralet MC, Cavelier C, Eland C, Effroy D, Hématy K, McCartney L, Truong HN, Gaudon V, Thibault JF, Marchant A, Höfte H., Plant J 50(4), 2007
PMID: 17425712
Tandem gene arrays: a challenge for functional genomics.
Jander G, Barth C., Trends Plant Sci 12(5), 2007
PMID: 17416543
The nuclear-encoded factor HCF173 is involved in the initiation of translation of the psbA mRNA in Arabidopsis thaliana.
Schult K, Meierhoff K, Paradies S, Töller T, Wolff P, Westhoff P., Plant Cell 19(4), 2007
PMID: 17435084
Characterization of the VIER F-BOX PROTEINE genes from Arabidopsis reveals their importance for plant growth and development.
Schwager KM, Calderon-Villalobos LI, Dohmann EM, Willige BC, Knierer S, Nill C, Schwechheimer C., Plant Cell 19(4), 2007
PMID: 17435085
Arabidopsis Teosinte Branched1-like 1 regulates axillary bud outgrowth and is homologous to monocot Teosinte Branched1.
Finlayson SA., Plant Cell Physiol 48(5), 2007
PMID: 17452340
A bona fide La protein is required for embryogenesis in Arabidopsis thaliana.
Fleurdépine S, Deragon JM, Devic M, Guilleminot J, Bousquet-Antonelli C., Nucleic Acids Res 35(10), 2007
PMID: 17459889
The transcription factor HIG1/MYB51 regulates indolic glucosinolate biosynthesis in Arabidopsis thaliana.
Gigolashvili T, Berger B, Mock HP, Müller C, Weisshaar B, Flügge UI., Plant J 50(5), 2007
PMID: 17461791
Sequence-indexed mutations in maize using the UniformMu transposon-tagging population.
Settles AM, Holding DR, Tan BC, Latshaw SP, Liu J, Suzuki M, Li L, O'Brien BA, Fajardo DS, Wroclawska E, Tseung CW, Lai J, Hunter CT, Avigne WT, Baier J, Messing J, Hannah LC, Koch KE, Becraft PW, Larkins BA, McCarty DR., BMC Genomics 8(), 2007
PMID: 17490480
Arabidopsis VIRE2 INTERACTING PROTEIN2 is required for Agrobacterium T-DNA integration in plants.
Anand A, Krichevsky A, Schornack S, Lahaye T, Tzfira T, Tang Y, Citovsky V, Mysore KS., Plant Cell 19(5), 2007
PMID: 17496122
PRT6/At5g02310 encodes an Arabidopsis ubiquitin ligase of the N-end rule pathway with arginine specificity and is not the CER3 locus.
Garzón M, Eifler K, Faust A, Scheel H, Hofmann K, Koncz C, Yephremov A, Bachmair A., FEBS Lett 581(17), 2007
PMID: 17572409
Arabidopsis cytochrome P450 monooxygenase 71A13 catalyzes the conversion of indole-3-acetaldoxime in camalexin synthesis.
Nafisi M, Goregaoker S, Botanga CJ, Glawischnig E, Olsen CE, Halkier BA, Glazebrook J., Plant Cell 19(6), 2007
PMID: 17573535
Natural variation for sulfate content in Arabidopsis thaliana is highly controlled by APR2.
Loudet O, Saliba-Colombani V, Camilleri C, Calenge F, Gaudon V, Koprivova A, North KA, Kopriva S, Daniel-Vedele F., Nat Genet 39(7), 2007
PMID: 17589509
Both caffeoyl Coenzyme A 3-O-methyltransferase 1 and caffeic acid O-methyltransferase 1 are involved in redundant functions for lignin, flavonoids and sinapoyl malate biosynthesis in Arabidopsis.
Do CT, Pollet B, Thévenin J, Sibout R, Denoue D, Barrière Y, Lapierre C, Jouanin L., Planta 226(5), 2007
PMID: 17594112
Nitration of gamma-tocopherol in plant tissues.
Desel C, Hubbermann EM, Schwarz K, Krupinska K., Planta 226(5), 2007
PMID: 17619201
Characterization of seed-specific benzoyloxyglucosinolate mutations in Arabidopsis thaliana.
Kliebenstein DJ, D'Auria JC, Behere AS, Kim JH, Gunderson KL, Breen JN, Lee G, Gershenzon J, Last RL, Jander G., Plant J 51(6), 2007
PMID: 17651367
Toc64/OEP64 is not essential for the efficient import of proteins into chloroplasts in Arabidopsis thaliana.
Aronsson H, Boij P, Patel R, Wardle A, Töpel M, Jarvis P., Plant J 52(1), 2007
PMID: 17655652
The iron-responsive element (IRE)/iron-regulatory protein 1 (IRP1)-cytosolic aconitase iron-regulatory switch does not operate in plants.
Arnaud N, Ravet K, Borlotti A, Touraine B, Boucherez J, Fizames C, Briat JF, Cellier F, Gaymard F., Biochem J 405(3), 2007
PMID: 17437406
NBS1 is involved in DNA repair and plays a synergistic role with ATM in mediating meiotic homologous recombination in plants.
Waterworth WM, Altun C, Armstrong SJ, Roberts N, Dean PJ, Young K, Weil CF, Bray CM, West CE., Plant J 52(1), 2007
PMID: 17672843
A cyclic nucleotide-gated channel is essential for polarized tip growth of pollen.
Frietsch S, Wang YF, Sladek C, Poulsen LR, Romanowsky SM, Schroeder JI, Harper JF., Proc Natl Acad Sci U S A 104(36), 2007
PMID: 17726111
Characterization of Arabidopsis ABCG11/WBC11, an ATP binding cassette (ABC) transporter that is required for cuticular lipid secretion.
Bird D, Beisson F, Brigham A, Shin J, Greer S, Jetter R, Kunst L, Wu X, Yephremov A, Samuels L., Plant J 52(3), 2007
PMID: 17727615
TLP18.3, a novel thylakoid lumen protein regulating photosystem II repair cycle.
Sirpiö S, Allahverdiyeva Y, Suorsa M, Paakkarinen V, Vainonen J, Battchikova N, Aro EM., Biochem J 406(3), 2007
PMID: 17576201
INCURVATA2 encodes the catalytic subunit of DNA Polymerase alpha and interacts with genes involved in chromatin-mediated cellular memory in Arabidopsis thaliana.
Barrero JM, González-Bayón R, del Pozo JC, Ponce MR, Micol JL., Plant Cell 19(9), 2007
PMID: 17873092
Geranyl diphosphate synthase is required for biosynthesis of gibberellins.
van Schie CC, Ament K, Schmidt A, Lange T, Haring MA, Schuurink RC., Plant J 52(4), 2007
PMID: 17877699
Mitochondrial type-I prohibitins of Arabidopsis thaliana are required for supporting proficient meristem development.
Van Aken O, Pecenková T, van de Cotte B, De Rycke R, Eeckhout D, Fromm H, De Jaeger G, Witters E, Beemster GT, Inzé D, Van Breusegem F., Plant J 52(5), 2007
PMID: 17883375
The Arabidopsis TALE homeobox gene ATH1 controls floral competency through positive regulation of FLC.
Proveniers M, Rutjens B, Brand M, Smeekens S., Plant J 52(5), 2007
PMID: 17908157
The catalytically active tyrosine residues of both SPO11-1 and SPO11-2 are required for meiotic double-strand break induction in Arabidopsis.
Hartung F, Wurz-Wildersinn R, Fuchs J, Schubert I, Suer S, Puchta H., Plant Cell 19(10), 2007
PMID: 17965269
Functional definition of outer membrane proteins involved in preprotein import into mitochondria.
Lister R, Carrie C, Duncan O, Ho LH, Howell KA, Murcha MW, Whelan J., Plant Cell 19(11), 2007
PMID: 17981999
Two closely related RecQ helicases have antagonistic roles in homologous recombination and DNA repair in Arabidopsis thaliana.
Hartung F, Suer S, Puchta H., Proc Natl Acad Sci U S A 104(47), 2007
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VPS9a, the common activator for two distinct types of Rab5 GTPases, is essential for the development of Arabidopsis thaliana.
Goh T, Uchida W, Arakawa S, Ito E, Dainobu T, Ebine K, Takeuchi M, Sato K, Ueda T, Nakano A., Plant Cell 19(11), 2007
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A systems biology approach identifies a R2R3 MYB gene subfamily with distinct and overlapping functions in regulation of aliphatic glucosinolates.
Sønderby IE, Hansen BG, Bjarnholt N, Ticconi C, Halkier BA, Kliebenstein DJ., PLoS One 2(12), 2007
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Arabidopsis cytokinin receptor mutants reveal functions in shoot growth, leaf senescence, seed size, germination, root development, and cytokinin metabolism.
Riefler M, Novak O, Strnad M, Schmülling T., Plant Cell 18(1), 2006
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Deletion of core components of the plastid protein import machinery causes differential arrest of embryo development in Arabidopsis thaliana.
Hust B, Gutensohn M., Plant Biol (Stuttg) 8(1), 2006
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Mutation in a homolog of yeast Vps53p accounts for the heat and osmotic hypersensitive phenotypes in Arabidopsis hit1-1 mutant.
Lee CF, Pu HY, Wang LC, Sayler RJ, Yeh CH, Wu SJ., Planta 224(2), 2006
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Characterization of T-DNA integration in creeping bentgrass.
Fu D, St Amand PC, Muthukrishnan S, Liang GH., Plant Sci 170(2), 2006
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Inexpensive fine mapping and positional cloning in plants using visible, mapped transgenes
Dinka SJ, Raizada MN., Can J Bot 84(2), 2006
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Analysis of T-DNA insertion site distribution patterns in Arabidopsis thaliana reveals special features of genes without insertions.
Li Y, Rosso MG, Ulker B, Weisshaar B., Genomics 87(5), 2006
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Arabidopsis Hsa32, a novel heat shock protein, is essential for acquired thermotolerance during long recovery after acclimation.
Charng YY, Liu HC, Liu NY, Hsu FC, Ko SS., Plant Physiol 140(4), 2006
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Arabidopsis Bax inhibitor-1 functions as an attenuator of biotic and abiotic types of cell death.
Watanabe N, Lam E., Plant J 45(6), 2006
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Peroxiredoxin Q of Arabidopsis thaliana is attached to the thylakoids and functions in context of photosynthesis.
Lamkemeyer P, Laxa M, Collin V, Li W, Finkemeier I, Schöttler MA, Holtkamp V, Tognetti VB, Issakidis-Bourguet E, Kandlbinder A, Weis E, Miginiac-Maslow M, Dietz KJ., Plant J 45(6), 2006
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Highly specific gene silencing by artificial microRNAs in Arabidopsis.
Schwab R, Ossowski S, Riester M, Warthmann N, Weigel D., Plant Cell 18(5), 2006
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GLABROUS INFLORESCENCE STEMS modulates the regulation by gibberellins of epidermal differentiation and shoot maturation in Arabidopsis.
Gan Y, Kumimoto R, Liu C, Ratcliffe O, Yu H, Broun P., Plant Cell 18(6), 2006
PMID: 16679458
PHYTOCHROME KINASE SUBSTRATE 1 is a phototropin 1 binding protein required for phototropism.
Lariguet P, Schepens I, Hodgson D, Pedmale UV, Trevisan M, Kami C, de Carbonnel M, Alonso JM, Ecker JR, Liscum E, Fankhauser C., Proc Natl Acad Sci U S A 103(26), 2006
PMID: 16777956
CUL4 associates with DDB1 and DET1 and its downregulation affects diverse aspects of development in Arabidopsis thaliana.
Bernhardt A, Lechner E, Hano P, Schade V, Dieterle M, Anders M, Dubin MJ, Benvenuto G, Bowler C, Genschik P, Hellmann H., Plant J 47(4), 2006
PMID: 16792691
A trial of phenome analysis using 4000 Ds-insertional mutants in gene-coding regions of Arabidopsis.
Kuromori T, Wada T, Kamiya A, Yuguchi M, Yokouchi T, Imura Y, Takabe H, Sakurai T, Akiyama K, Hirayama T, Okada K, Shinozaki K., Plant J 47(4), 2006
PMID: 16813574
Regulation of ABA level and water-stress tolerance of Arabidopsis by ectopic expression of a peanut 9-cis-epoxycarotenoid dioxygenase gene.
Wan XR, Li L., Biochem Biophys Res Commun 347(4), 2006
PMID: 16870153
The putative SWI/SNF complex subunit BRAHMA activates flower homeotic genes in Arabidopsis thaliana.
Hurtado L, Farrona S, Reyes JC., Plant Mol Biol 62(1-2), 2006
PMID: 16845477
The Arabidopsis Bio2 protein requires mitochondrial targeting for activity.
Arnal N, Alban C, Quadrado M, Grandjean O, Mireau H., Plant Mol Biol 62(3), 2006
PMID: 16897469
Dual temporal role of plastid sigma factor 6 in Arabidopsis development.
Loschelder H, Schweer J, Link B, Link G., Plant Physiol 142(2), 2006
PMID: 16905663
The role of AtMUS81 in DNA repair and its genetic interaction with the helicase AtRecQ4A.
Hartung F, Suer S, Bergmann T, Puchta H., Nucleic Acids Res 34(16), 2006
PMID: 16945961
Dual function of an Arabidopsis transcription factor DREB2A in water-stress-responsive and heat-stress-responsive gene expression.
Sakuma Y, Maruyama K, Qin F, Osakabe Y, Shinozaki K, Yamaguchi-Shinozaki K., Proc Natl Acad Sci U S A 103(49), 2006
PMID: 17030801
Arabidopsis WRKY33 transcription factor is required for resistance to necrotrophic fungal pathogens.
Zheng Z, Qamar SA, Chen Z, Mengiste T., Plant J 48(4), 2006
PMID: 17059405
Branched-chain aminotransferase4 is part of the chain elongation pathway in the biosynthesis of methionine-derived glucosinolates in Arabidopsis.
Schuster J, Knill T, Reichelt M, Gershenzon J, Binder S., Plant Cell 18(10), 2006
PMID: 17056707
The balance between the MIR164A and CUC2 genes controls leaf margin serration in Arabidopsis.
Nikovics K, Blein T, Peaucelle A, Ishida T, Morin H, Aida M, Laufs P., Plant Cell 18(11), 2006
PMID: 17098808
A promoter switch that can rescue a plant sigma factor mutant.
Schweer J, Loschelder H, Link G., FEBS Lett 580(28-29), 2006
PMID: 17118361
The transcription factors WRKY11 and WRKY17 act as negative regulators of basal resistance in Arabidopsis thaliana.
Journot-Catalino N, Somssich IE, Roby D, Kroj T., Plant Cell 18(11), 2006
PMID: 17114354
Arabidopsis CUP-SHAPED COTYLEDON3 regulates postembryonic shoot meristem and organ boundary formation.
Hibara K, Karim MR, Takada S, Taoka K, Furutani M, Aida M, Tasaka M., Plant Cell 18(11), 2006
PMID: 17122068
ATAB2 is a novel factor in the signalling pathway of light-controlled synthesis of photosystem proteins.
Barneche F, Winter V, Crèvecoeur M, Rochaix JD., EMBO J 25(24), 2006
PMID: 17139246
PDX1 is essential for vitamin B6 biosynthesis, development and stress tolerance in Arabidopsis.
Titiz O, Tambasco-Studart M, Warzych E, Apel K, Amrhein N, Laloi C, Fitzpatrick TB., Plant J 48(6), 2006
PMID: 17227548
Arabidopsis DCP2, DCP1, and VARICOSE form a decapping complex required for postembryonic development.
Xu J, Yang JY, Niu QW, Chua NH., Plant Cell 18(12), 2006
PMID: 17158604
Two Arabidopsis threonine aldolases are nonredundant and compete with threonine deaminase for a common substrate pool.
Joshi V, Laubengayer KM, Schauer N, Fernie AR, Jander G., Plant Cell 18(12), 2006
PMID: 17172352
Deficiency of a plastidial adenylate kinase in Arabidopsis results in elevated photosynthetic amino acid biosynthesis and enhanced growth.
Carrari F, Coll-Garcia D, Schauer N, Lytovchenko A, Palacios-Rojas N, Balbo I, Rosso M, Fernie AR., Plant Physiol 137(1), 2005
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Site preferences of insertional mutagenesis agents in Arabidopsis.
Pan X, Li Y, Stein L., Plant Physiol 137(1), 2005
PMID: 15618417
Mutation in the Arabidopisis thaliana DEK1 calpain gene perturbs endosperm and embryo development while over-expression affects organ development globally.
Lid SE, Olsen L, Nestestog R, Aukerman M, Brown RC, Lemmon B, Mucha M, Opsahl-Sorteberg HG, Olsen OA., Planta 221(3), 2005
PMID: 15647902
The inositol oxygenase gene family of Arabidopsis is involved in the biosynthesis of nucleotide sugar precursors for cell-wall matrix polysaccharides.
Kanter U, Usadel B, Guerineau F, Li Y, Pauly M, Tenhaken R., Planta 221(2), 2005
PMID: 15660207
Identification of Arabidopsis thaliana transformants without selection reveals a high occurrence of silenced T-DNA integrations.
Francis KE, Spiker S., Plant J 41(3), 2005
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Mutational and expression analysis of ELIP1 and ELIP2 in Arabidopsis thaliana.
Casazza AP, Rossini S, Rosso MG, Soave C., Plant Mol Biol 58(1), 2005
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Agrobacterium-mediated transformation as a tool for functional genomics in fungi.
Michielse CB, Hooykaas PJ, van den Hondel CA, Ram AF., Curr Genet 48(1), 2005
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A single amino acid converts a repressor to an activator of flowering.
Hanzawa Y, Money T, Bradley D., Proc Natl Acad Sci U S A 102(21), 2005
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A central role for S-nitrosothiols in plant disease resistance.
Feechan A, Kwon E, Yun BW, Wang Y, Pallas JA, Loake GJ., Proc Natl Acad Sci U S A 102(22), 2005
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The Arabidopsis plastidic methionine sulfoxide reductase B proteins. Sequence and activity characteristics, comparison of the expression with plastidic methionine sulfoxide reductase A, and induction by photooxidative stress.
Vieira Dos Santos C, Cuiné S, Rouhier N, Rey P., Plant Physiol 138(2), 2005
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Transcriptional profile of the Arabidopsis root quiescent center.
Nawy T, Lee JY, Colinas J, Wang JY, Thongrod SC, Malamy JE, Birnbaum K, Benfey PN., Plant Cell 17(7), 2005
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The MAP kinase substrate MKS1 is a regulator of plant defense responses.
Andreasson E, Jenkins T, Brodersen P, Thorgrimsen S, Petersen NH, Zhu S, Qiu JL, Micheelsen P, Rocher A, Petersen M, Newman MA, Bjørn Nielsen H, Hirt H, Somssich I, Mattsson O, Mundy J., EMBO J 24(14), 2005
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The evolutionarily conserved TOUGH protein is required for proper development of Arabidopsis thaliana.
Calderon-Villalobos LI, Kuhnle C, Dohmann EM, Li H, Bevan M, Schwechheimer C., Plant Cell 17(9), 2005
PMID: 16024589
SWI3 subunits of putative SWI/SNF chromatin-remodeling complexes play distinct roles during Arabidopsis development.
Sarnowski TJ, Ríos G, Jásik J, Swiezewski S, Kaczanowski S, Li Y, Kwiatkowska A, Pawlikowska K, Koźbiał M, Koźbiał P, Koncz C, Jerzmanowski A., Plant Cell 17(9), 2005
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Arabidopsis CUL3A and CUL3B genes are essential for normal embryogenesis.
Thomann A, Brukhin V, Dieterle M, Gheyeselinck J, Vantard M, Grossniklaus U, Genschik P., Plant J 43(3), 2005
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The small GTPase AtRAC2/ROP7 is specifically expressed during late stages of xylem differentiation in Arabidopsis.
Brembu T, Winge P, Bones AM., J Exp Bot 56(419), 2005
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A rapid and versatile combined DNA/RNA extraction protocol and its application to the analysis of a novel DNA marker set polymorphic between Arabidopsis thaliana ecotypes Col-0 and Landsberg erecta.
Berendzen K, Searle I, Ravenscroft D, Koncz C, Batschauer A, Coupland G, Somssich IE, Ülker B., Plant Methods 1(1), 2005
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CONSTANS activates SUPPRESSOR OF OVEREXPRESSION OF CONSTANS 1 through FLOWERING LOCUS T to promote flowering in Arabidopsis.
Yoo SK, Chung KS, Kim J, Lee JH, Hong SM, Yoo SJ, Yoo SY, Lee JS, Ahn JH., Plant Physiol 139(2), 2005
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Inferring hypotheses on functional relationships of genes: Analysis of the Arabidopsis thaliana subtilase gene family.
Rautengarten C, Steinhauser D, Büssis D, Stintzi A, Schaller A, Kopka J, Altmann T., PLoS Comput Biol 1(4), 2005
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D-type cyclins activate division in the root apex to promote seed germination in Arabidopsis.
Masubelele NH, Dewitte W, Menges M, Maughan S, Collins C, Huntley R, Nieuwland J, Scofield S, Murray JA., Proc Natl Acad Sci U S A 102(43), 2005
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Identification of three urease accessory proteins that are required for urease activation in Arabidopsis.
Witte CP, Rosso MG, Romeis T., Plant Physiol 139(3), 2005
PMID: 16244137
Requirement of aminoacyl-tRNA synthetases for gametogenesis and embryo development in Arabidopsis.
Berg M, Rogers R, Muralla R, Meinke D., Plant J 44(5), 2005
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Organellar gene transcription and early seedling development are affected in the rpoT;2 mutant of Arabidopsis.
Baba K, Schmidt J, Espinosa-Ruiz A, Villarejo A, Shiina T, Gardeström P, Sane AP, Bhalerao RP., Plant J 38(1), 2004
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Tic32, an essential component in chloroplast biogenesis.
Hörmann F, Küchler M, Sveshnikov D, Oppermann U, Li Y, Soll J., J Biol Chem 279(33), 2004
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Arabidopsis CAND1, an unmodified CUL1-interacting protein, is involved in multiple developmental pathways controlled by ubiquitin/proteasome-mediated protein Degradation.
Feng S, Shen Y, Sullivan JA, Rubio V, Xiong Y, Sun TP, Deng XW., Plant Cell 16(7), 2004
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The Arabidopsis AtRAD51 gene is dispensable for vegetative development but required for meiosis.
Li W, Chen C, Markmann-Mulisch U, Timofejeva L, Schmelzer E, Ma H, Reiss B., Proc Natl Acad Sci U S A 101(29), 2004
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Functional specialization amongst the Arabidopsis Toc159 family of chloroplast protein import receptors.
Kubis S, Patel R, Combe J, Bédard J, Kovacheva S, Lilley K, Biehl A, Leister D, Ríos G, Koncz C, Jarvis P., Plant Cell 16(8), 2004
PMID: 15273297
High throughput T-DNA insertion mutagenesis in rice: a first step towards in silico reverse genetics.
Sallaud C, Gay C, Larmande P, Bès M, Piffanelli P, Piégu B, Droc G, Regad F, Bourgeois E, Meynard D, Périn C, Sabau X, Ghesquière A, Glaszmann JC, Delseny M, Guiderdoni E., Plant J 39(3), 2004
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The SPA quartet: a family of WD-repeat proteins with a central role in suppression of photomorphogenesis in arabidopsis.
Laubinger S, Fittinghoff K, Hoecker U., Plant Cell 16(9), 2004
PMID: 15308756
Versatile gene-specific sequence tags for Arabidopsis functional genomics: transcript profiling and reverse genetics applications.
Hilson P, Allemeersch J, Altmann T, Aubourg S, Avon A, Beynon J, Bhalerao RP, Bitton F, Caboche M, Cannoot B, Chardakov V, Cognet-Holliger C, Colot V, Crowe M, Darimont C, Durinck S, Eickhoff H, de Longevialle AF, Farmer EE, Grant M, Kuiper MT, Lehrach H, Léon C, Leyva A, Lundeberg J, Lurin C, Moreau Y, Nietfeld W, Paz-Ares J, Reymond P, Rouzé P, Sandberg G, Segura MD, Serizet C, Tabrett A, Taconnat L, Thareau V, Van Hummelen P, Vercruysse S, Vuylsteke M, Weingartner M, Weisbeek PJ, Wirta V, Wittink FR, Zabeau M, Small I., Genome Res 14(10b), 2004
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The Cell Wall Navigator database. A systems-based approach to organism-unrestricted mining of protein families involved in cell wall metabolism.
Girke T, Lauricha J, Tran H, Keegstra K, Raikhel N., Plant Physiol 136(2), 2004
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TELOMERASE ACTIVATOR1 induces telomerase activity and potentiates responses to auxin in Arabidopsis.
Ren S, Johnston JS, Shippen DE, McKnight TD., Plant Cell 16(11), 2004
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FRU (BHLH029) is required for induction of iron mobilization genes in Arabidopsis thaliana.
Jakoby M, Wang HY, Reidt W, Weisshaar B, Bauer P., FEBS Lett 577(3), 2004
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The Arabidopsis KLUNKER gene controls cell shape changes and encodes the AtSRA1 homolog.
Saedler R, Zimmermann I, Mutondo M, Hülskamp M., Plant Mol Biol 56(5), 2004
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