An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics

Rosso MG, Li Y, Strizhov N, Reiss B, Dekker K, Weisshaar B (2003)
Plant Molecular Biology 53(1/2): 247-259.

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Zeitschriftenaufsatz | Veröffentlicht | Englisch
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The GABI-Kat population of T-DNA mutagenized Arabidopsis thaliana lines with sequence-characterized insertion sites is used extensively for efficient progress in plant functional genomics. Here we provide details about the establishment of the material, demonstrate the population's functionality and discuss results from quality control studies. T-DNA insertion mutants of the accession Columbia (Col-0) were created by Agrobacterium tumefaciens-mediated transformation. To allow selection of transformed plants under greenhouse conditions, a sulfadiazine resistance marker was employed. DNA from leaves of T1 plants was extracted and used as a template for PCR-based amplification of DNA fragments spanning insertion site borders. After sequencing, the data were placed in a flanking sequence tag (FST) database describing which mutant allele was present in which line. Analysis of the distribution of T-DNA insertions revealed a clear bias towards intergenic regions. Insertion sites appeared more frequent in regions in front of the ATG and after STOP codons of predicted genes. Segregation analysis for sulfadiazine resistance showed that 62% of the transformants contain an insertion at only one genetic locus. In quality control studies with gene-specific primers in combination with T-DNA primers, 76% of insertions could be confirmed. Finally, the functionality of the GABI-Kat population was demonstrated by exemplary confirmation of several new transparent testa alleles, as well as a number of other mutants, which were identified on the basis of the FST data.
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Plant Molecular Biology
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53
Zeitschriftennummer
1/2
Seite
247-259
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Rosso MG, Li Y, Strizhov N, Reiss B, Dekker K, Weisshaar B. An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics. Plant Molecular Biology. 2003;53(1/2):247-259.
Rosso, M. G., Li, Y., Strizhov, N., Reiss, B., Dekker, K., & Weisshaar, B. (2003). An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics. Plant Molecular Biology, 53(1/2), 247-259. doi:10.1023/B:PLAN.0000009297.37235.4a
Rosso, M. G., Li, Y., Strizhov, N., Reiss, B., Dekker, K., and Weisshaar, B. (2003). An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics. Plant Molecular Biology 53, 247-259.
Rosso, M.G., et al., 2003. An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics. Plant Molecular Biology, 53(1/2), p 247-259.
M.G. Rosso, et al., “An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics”, Plant Molecular Biology, vol. 53, 2003, pp. 247-259.
Rosso, M.G., Li, Y., Strizhov, N., Reiss, B., Dekker, K., Weisshaar, B.: An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics. Plant Molecular Biology. 53, 247-259 (2003).
Rosso, Mario G., Li, Yong, Strizhov, Nicolai, Reiss, Bernd, Dekker, Koen, and Weisshaar, Bernd. “An Arabidopsis thaliana T-DNA mutagenized population (GABI-Kat) for flanking sequence tag-based reverse genetics”. Plant Molecular Biology 53.1/2 (2003): 247-259.

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MES16, a member of the methylesterase protein family, specifically demethylates fluorescent chlorophyll catabolites during chlorophyll breakdown in Arabidopsis.
Christ B, Schelbert S, Aubry S, Süssenbacher I, Müller T, Kräutler B, Hörtensteiner S., Plant Physiol 158(2), 2012
PMID: 22147518
Ethylene-responsive element-binding factor 5, ERF5, is involved in chitin-induced innate immunity response.
Son GH, Wan J, Kim HJ, Nguyen XC, Chung WS, Hong JC, Stacey G., Mol Plant Microbe Interact 25(1), 2012
PMID: 21936663
Mutations in the antiviral RNAi defense pathway modify Brome mosaic virus RNA recombinant profiles.
Dzianott A, Sztuba-Solińska J, Bujarski JJ., Mol Plant Microbe Interact 25(1), 2012
PMID: 21936664
The GCP3-interacting proteins GIP1 and GIP2 are required for γ-tubulin complex protein localization, spindle integrity, and chromosomal stability.
Janski N, Masoud K, Batzenschlager M, Herzog E, Evrard JL, Houlné G, Bourge M, Chabouté ME, Schmit AC., Plant Cell 24(3), 2012
PMID: 22427335
Comparability of imazapyr-resistant Arabidopsis created by transgenesis and mutagenesis.
Schnell J, Labbé H, Kovinich N, Manabe Y, Miki B., Transgenic Res 21(6), 2012
PMID: 22430369
The LysM receptor-like kinase LysM RLK1 is required to activate defense and abiotic-stress responses induced by overexpression of fungal chitinases in Arabidopsis plants.
Brotman Y, Landau U, Pnini S, Lisec J, Balazadeh S, Mueller-Roeber B, Zilberstein A, Willmitzer L, Chet I, Viterbo A., Mol Plant 5(5), 2012
PMID: 22461667
Genetic and molecular characterization reveals a unique nucleobase cation symporter 1 in Arabidopsis.
Mourad GS, Tippmann-Crosby J, Hunt KA, Gicheru Y, Bade K, Mansfield TA, Schultes NP., FEBS Lett 586(9), 2012
PMID: 22616996
The Arabidopsis ubiquitin ligases ATL31 and ATL6 control the defense response as well as the carbon/nitrogen response.
Maekawa S, Sato T, Asada Y, Yasuda S, Yoshida M, Chiba Y, Yamaguchi J., Plant Mol Biol 79(3), 2012
PMID: 22481162
The Fanconi anemia ortholog FANCM ensures ordered homologous recombination in both somatic and meiotic cells in Arabidopsis.
Knoll A, Higgins JD, Seeliger K, Reha SJ, Dangel NJ, Bauknecht M, Schröpfer S, Franklin FC, Puchta H., Plant Cell 24(4), 2012
PMID: 22547783
Arabidopsis thaliana AtUTr7 encodes a golgi-localized UDP-glucose/UDP-galactose transporter that affects lateral root emergence.
Handford M, Rodríguez-Furlán C, Marchant L, Segura M, Gómez D, Alvarez-Buylla E, Xiong GY, Pauly M, Orellana A., Mol Plant 5(6), 2012
PMID: 22933714
Analysis of T-DNA alleles of flavonoid biosynthesis genes in Arabidopsis ecotype Columbia.
Bowerman PA, Ramirez MV, Price MB, Helm RF, Winkel BS., BMC Res Notes 5(), 2012
PMID: 22947320
Impact of the absence of stem-specific β-glucosidases on lignin and monolignols.
Chapelle A, Morreel K, Vanholme R, Le-Bris P, Morin H, Lapierre C, Boerjan W, Jouanin L, Demont-Caulet N., Plant Physiol 160(3), 2012
PMID: 22984124
A systems biology view of responses to lignin biosynthesis perturbations in Arabidopsis.
Vanholme R, Storme V, Vanholme B, Sundin L, Christensen JH, Goeminne G, Halpin C, Rohde A, Morreel K, Boerjan W., Plant Cell 24(9), 2012
PMID: 23012438
Impact of SO(2) on Arabidopsis thaliana transcriptome in wildtype and sulfite oxidase knockout plants analyzed by RNA deep sequencing.
Hamisch D, Randewig D, Schliesky S, Bräutigam A, Weber AP, Geffers R, Herschbach C, Rennenberg H, Mendel RR, Hänsch R., New Phytol 196(4), 2012
PMID: 23025405
Gene dosage effect of WEE1 on growth and morphogenesis from arabidopsis hypocotyl explants.
Spadafora N, Perrotta L, Nieuwland J, Albani D, Bitonti MB, Herbert RJ, Doonan JH, Marchbank AM, Siciliano I, Lentz Grønlund A, Francis D, Rogers HJ., Ann Bot 110(8), 2012
PMID: 23065633
Versatile roles of Arabidopsis plastid ribosomal proteins in plant growth and development.
Romani I, Tadini L, Rossi F, Masiero S, Pribil M, Jahns P, Kater M, Leister D, Pesaresi P., Plant J 72(6), 2012
PMID: 22900828
Metabolic and transcriptomic changes induced in Arabidopsis by the rhizobacterium Pseudomonas fluorescens SS101.
van de Mortel JE, de Vos RC, Dekkers E, Pineda A, Guillod L, Bouwmeester K, van Loon JJ, Dicke M, Raaijmakers JM., Plant Physiol 160(4), 2012
PMID: 23073694
Background-dependent effects of polyglutamine variation in the Arabidopsis thaliana gene ELF3.
Undurraga SF, Press MO, Legendre M, Bujdoso N, Bale J, Wang H, Davis SJ, Verstrepen KJ, Queitsch C., Proc Natl Acad Sci U S A 109(47), 2012
PMID: 23129635
Forward chemical genetic screens in Arabidopsis identify genes that influence sensitivity to the phytotoxic compound sulfamethoxazole.
Schreiber KJ, Austin RS, Gong Y, Zhang J, Fung P, Wang PW, Guttman DS, Desveaux D., BMC Plant Biol 12(), 2012
PMID: 23176361
CLE peptides can negatively regulate protoxylem vessel formation via cytokinin signaling.
Kondo Y, Hirakawa Y, Kieber JJ, Fukuda H., Plant Cell Physiol 52(1), 2011
PMID: 20802224
BRCC36A is epistatic to BRCA1 in DNA crosslink repair and homologous recombination in Arabidopsis thaliana.
Block-Schmidt AS, Dukowic-Schulze S, Wanieck K, Reidt W, Puchta H., Nucleic Acids Res 39(1), 2011
PMID: 20817926
Three endo-β-mannanase genes expressed in the micropylar endosperm and in the radicle influence germination of Arabidopsis thaliana seeds.
Iglesias-Fernández R, Rodríguez-Gacio MC, Barrero-Sicilia C, Carbonero P, Matilla A., Planta 233(1), 2011
PMID: 20878180
HCC1, the Arabidopsis homologue of the yeast mitochondrial copper chaperone SCO1, is essential for embryonic development.
Steinebrunner I, Landschreiber M, Krause-Buchholz U, Teichmann J, Rödel G., J Exp Bot 62(1), 2011
PMID: 21041373
Involvement of Arabidopsis RACK1 in protein translation and its regulation by abscisic acid.
Guo J, Wang S, Valerius O, Hall H, Zeng Q, Li JF, Weston DJ, Ellis BE, Chen JG., Plant Physiol 155(1), 2011
PMID: 21098678
Identification of nuclear genes encoding chloroplast-localized proteins required for embryo development in Arabidopsis.
Bryant N, Lloyd J, Sweeney C, Myouga F, Meinke D., Plant Physiol 155(4), 2011
PMID: 21139083
Analysis of ven3 and ven6 reticulate mutants reveals the importance of arginine biosynthesis in Arabidopsis leaf development.
Mollá-Morales A, Sarmiento-Mañús R, Robles P, Quesada V, Pérez-Pérez JM, González-Bayón R, Hannah MA, Willmitzer L, Ponce MR, Micol JL., Plant J 65(3), 2011
PMID: 21265888
Metabolic sugar signal promotes Arabidopsis meristematic proliferation via G2.
Skylar A, Sung F, Hong F, Chory J, Wu X., Dev Biol 351(1), 2011
PMID: 21185286
Loss-of-function mutation of REDUCED WALL ACETYLATION2 in Arabidopsis leads to reduced cell wall acetylation and increased resistance to Botrytis cinerea.
Manabe Y, Nafisi M, Verhertbruggen Y, Orfila C, Gille S, Rautengarten C, Cherk C, Marcus SE, Somerville S, Pauly M, Knox JP, Sakuragi Y, Scheller HV., Plant Physiol 155(3), 2011
PMID: 21212300
The Arabidopsis peptide kiss of death is an inducer of programmed cell death.
Blanvillain R, Young B, Cai YM, Hecht V, Varoquaux F, Delorme V, Lancelin JM, Delseny M, Gallois P., EMBO J 30(6), 2011
PMID: 21326210
A plant-specific transcription factor IIB-related protein, pBRP2, is involved in endosperm growth control.
Cavel E, Pillot M, Pontier D, Lahmy S, Bies-Etheve N, Vega D, Grimanelli D, Lagrange T., PLoS One 6(2), 2011
PMID: 21390310
Novel sulI binary vectors enable an inexpensive foliar selection method in Arabidopsis.
Thomson JG, Cook M, Guttman M, Smith J, Thilmony R., BMC Res Notes 4(), 2011
PMID: 21366919
Probing the roles of LRR RLK genes in Arabidopsis thaliana roots using a custom T-DNA insertion set.
ten Hove CA, Bochdanovits Z, Jansweijer VM, Koning FG, Berke L, Sanchez-Perez GF, Scheres B, Heidstra R., Plant Mol Biol 76(1-2), 2011
PMID: 21431781
Transporters in Arabidopsis roots mediating uptake of amino acids at naturally occurring concentrations.
Svennerstam H, Jämtgård S, Ahmad I, Huss-Danell K, Näsholm T, Ganeteg U., New Phytol 191(2), 2011
PMID: 21453345
Molecular and genetic analyses of Tic20 homologues in Arabidopsis thaliana chloroplasts.
Kasmati AR, Töpel M, Patel R, Murtaza G, Jarvis P., Plant J 66(5), 2011
PMID: 21395885
The interconversion of UDP-arabinopyranose and UDP-arabinofuranose is indispensable for plant development in Arabidopsis.
Rautengarten C, Ebert B, Herter T, Petzold CJ, Ishii T, Mukhopadhyay A, Usadel B, Scheller HV., Plant Cell 23(4), 2011
PMID: 21478444
Trans-repression of gene activity upstream of T-DNA tagged RLK902 links Arabidopsis root growth inhibition and downy mildew resistance.
ten Hove CA, de Jong M, Lapin D, Andel A, Sanchez-Perez GF, Tarutani Y, Suzuki Y, Heidstra R, van den Ackerveken G., PLoS One 6(4), 2011
PMID: 21532992
Malate transport by the vacuolar AtALMT6 channel in guard cells is subject to multiple regulation.
Meyer S, Scholz-Starke J, De Angeli A, Kovermann P, Burla B, Gambale F, Martinoia E., Plant J 67(2), 2011
PMID: 21443686
The phosphatidylcholine-hydrolysing phospholipase C NPC4 plays a role in response of Arabidopsis roots to salt stress.
Kocourková D, Krcková Z, Pejchar P, Veselková S, Valentová O, Wimalasekera R, Scherer GF, Martinec J., J Exp Bot 62(11), 2011
PMID: 21525137
EXORDIUM-LIKE1 promotes growth during low carbon availability in Arabidopsis.
Schröder F, Lisso J, Müssig C., Plant Physiol 156(3), 2011
PMID: 21543728
Members of the RKD transcription factor family induce an egg cell-like gene expression program.
Koszegi D, Johnston AJ, Rutten T, Czihal A, Altschmied L, Kumlehn J, Wüst SE, Kirioukhova O, Gheyselinck J, Grossniklaus U, Bäumlein H., Plant J 67(2), 2011
PMID: 21457369
A membrane trafficking pathway regulated by the plant-specific RAB GTPase ARA6.
Ebine K, Fujimoto M, Okatani Y, Nishiyama T, Goh T, Ito E, Dainobu T, Nishitani A, Uemura T, Sato MH, Thordal-Christensen H, Tsutsumi N, Nakano A, Ueda T., Nat Cell Biol 13(7), 2011
PMID: 21666683
Leucoanthocyanidin Dioxygenase in Arabidopsis thaliana: characterization of mutant alleles and regulation by MYB-BHLH-TTG1 transcription factor complexes.
Appelhagen I, Jahns O, Bartelniewoehner L, Sagasser M, Weisshaar B, Stracke R., Gene 484(1-2), 2011
PMID: 21683773
AtSAP130/AtSF3b-3 function is required for reproduction in Arabidopsis thaliana.
Aki S, Nakai H, Aoyama T, Oka A, Tsuge T., Plant Cell Physiol 52(8), 2011
PMID: 21680607
Succinic semialdehyde dehydrogenase is involved in the robust patterning of Arabidopsis leaves along the adaxial-abaxial axis.
Toyokura K, Watanabe K, Oiwaka A, Kusano M, Tameshige T, Tatematsu K, Matsumoto N, Tsugeki R, Saito K, Okada K., Plant Cell Physiol 52(8), 2011
PMID: 21690177
Acireductone dioxygenase 1 (ARD1) is an effector of the heterotrimeric G protein beta subunit in Arabidopsis.
Friedman EJ, Wang HX, Jiang K, Perovic I, Deshpande A, Pochapsky TC, Temple BR, Hicks SN, Harden TK, Jones AM., J Biol Chem 286(34), 2011
PMID: 21712381
Cytosolic γ-glutamyl peptidases process glutathione conjugates in the biosynthesis of glucosinolates and camalexin in Arabidopsis.
Geu-Flores F, Møldrup ME, Böttcher C, Olsen CE, Scheel D, Halkier BA., Plant Cell 23(6), 2011
PMID: 21712415
Arabidopsis IRE1 catalyses unconventional splicing of bZIP60 mRNA to produce the active transcription factor.
Nagashima Y, Mishiba K, Suzuki E, Shimada Y, Iwata Y, Koizumi N., Sci Rep 1(), 2011
PMID: 22355548
The RCC1 family protein RUG3 is required for splicing of nad2 and complex I biogenesis in mitochondria of Arabidopsis thaliana.
Kühn K, Carrie C, Giraud E, Wang Y, Meyer EH, Narsai R, des Francs-Small CC, Zhang B, Murcha MW, Whelan J., Plant J 67(6), 2011
PMID: 21623974
LOV KELCH PROTEIN2 and ZEITLUPE repress Arabidopsis photoperiodic flowering under non-inductive conditions, dependent on FLAVIN-BINDING KELCH REPEAT F-BOX1.
Takase T, Nishiyama Y, Tanihigashi H, Ogura Y, Miyazaki Y, Yamada Y, Kiyosue T., Plant J 67(4), 2011
PMID: 21518052
Developmental regulation of CYCA2s contributes to tissue-specific proliferation in Arabidopsis.
Vanneste S, Coppens F, Lee E, Donner TJ, Xie Z, Van Isterdael G, Dhondt S, De Winter F, De Rybel B, Vuylsteke M, De Veylder L, Friml J, Inzé D, Grotewold E, Scarpella E, Sack F, Beemster GT, Beeckman T., EMBO J 30(16), 2011
PMID: 21772250
Perturbation of Arabidopsis amino acid metabolism causes incompatibility with the adapted biotrophic pathogen Hyaloperonospora arabidopsidis.
Stuttmann J, Hubberten HM, Rietz S, Kaur J, Muskett P, Guerois R, Bednarek P, Hoefgen R, Parker JE., Plant Cell 23(7), 2011
PMID: 21784950
The Arabidopsis deubiquitinating enzyme AMSH3 interacts with ESCRT-III subunits and regulates their localization.
Katsiarimpa A, Anzenberger F, Schlager N, Neubert S, Hauser MT, Schwechheimer C, Isono E., Plant Cell 23(8), 2011
PMID: 21810997
Pyrimidine degradation influences germination seedling growth and production of Arabidopsis seeds.
Cornelius S, Witz S, Rolletschek H, Möhlmann T., J Exp Bot 62(15), 2011
PMID: 21865177
AtHaspin phosphorylates histone H3 at threonine 3 during mitosis and contributes to embryonic patterning in Arabidopsis.
Ashtiyani RK, Moghaddam AM, Schubert V, Rutten T, Fuchs J, Demidov D, Blattner FR, Houben A., Plant J 68(3), 2011
PMID: 21749502
Photosystem II supercomplex remodeling serves as an entry mechanism for state transitions in Arabidopsis.
Dietzel L, Bräutigam K, Steiner S, Schüffler K, Lepetit B, Grimm B, Schöttler MA, Pfannschmidt T., Plant Cell 23(8), 2011
PMID: 21880991
Adenosine 5'-phosphosulfate reductase (APR2) mutation in Arabidopsis implicates glutathione deficiency in selenate toxicity.
Grant K, Carey NM, Mendoza M, Schulze J, Pilon M, Pilon-Smits EA, van Hoewyk D., Biochem J 438(2), 2011
PMID: 21585336
Biosynthesis and defensive function of Nδ-acetylornithine, a jasmonate-induced Arabidopsis metabolite.
Adio AM, Casteel CL, De Vos M, Kim JH, Joshi V, Li B, Juéry C, Daron J, Kliebenstein DJ, Jander G., Plant Cell 23(9), 2011
PMID: 21917546
Genome walking in eukaryotes.
Leoni C, Volpicella M, De Leo F, Gallerani R, Ceci LR., FEBS J 278(21), 2011
PMID: 21848672
A genetic screen reveals Arabidopsis stomatal and/or apoplastic defenses against Pseudomonas syringae pv. tomato DC3000.
Zeng W, Brutus A, Kremer JM, Withers JC, Gao X, Jones AD, He SY., PLoS Pathog 7(10), 2011
PMID: 21998587
NFX1-LIKE2 (NFXL2) suppresses abscisic acid accumulation and stomatal closure in Arabidopsis thaliana.
Lisso J, Schröder F, Fisahn J, Müssig C., PLoS One 6(11), 2011
PMID: 22073231
Disruption of poly(ADP-ribosyl)ation mechanisms alters responses of Arabidopsis to biotic stress.
Adams-Phillips L, Briggs AG, Bent AF., Plant Physiol 152(1), 2010
PMID: 19889874
Plastidial glycolysis in developing Arabidopsis embryos.
Andriotis VM, Kruger NJ, Pike MJ, Smith AM., New Phytol 185(3), 2010
PMID: 20002588
Intersection of the tocopherol and plastoquinol metabolic pathways at the plastoglobule.
Zbierzak AM, Kanwischer M, Wille C, Vidi PA, Giavalisco P, Lohmann A, Briesen I, Porfirova S, Bréhélin C, Kessler F, Dörmann P., Biochem J 425(2), 2010
PMID: 19843012
Arabidopsis uracil DNA glycosylase (UNG) is required for base excision repair of uracil and increases plant sensitivity to 5-fluorouracil.
Córdoba-Cañero D, Dubois E, Ariza RR, Doutriaux MP, Roldán-Arjona T., J Biol Chem 285(10), 2010
PMID: 20056608
Metabolic profiling and cytological analysis of proanthocyanidins in immature seeds of Arabidopsis thaliana flavonoid accumulation mutants.
Kitamura S, Matsuda F, Tohge T, Yonekura-Sakakibara K, Yamazaki M, Saito K, Narumi I., Plant J 62(4), 2010
PMID: 20180920
Arabidopsis has a cytosolic fumarase required for the massive allocation of photosynthate into fumaric acid and for rapid plant growth on high nitrogen.
Pracharoenwattana I, Zhou W, Keech O, Francisco PB, Udomchalothorn T, Tschoep H, Stitt M, Gibon Y, Smith SM., Plant J 62(5), 2010
PMID: 20202172
The development of Arabidopsis as a model plant.
Koornneef M, Meinke D., Plant J 61(6), 2010
PMID: 20409266
The RST and PARP-like domain containing SRO protein family: analysis of protein structure, function and conservation in land plants.
Jaspers P, Overmyer K, Wrzaczek M, Vainonen JP, Blomster T, Salojärvi J, Reddy RA, Kangasjärvi J., BMC Genomics 11(), 2010
PMID: 20226034
miR390, Arabidopsis TAS3 tasiRNAs, and their AUXIN RESPONSE FACTOR targets define an autoregulatory network quantitatively regulating lateral root growth.
Marin E, Jouannet V, Herz A, Lokerse AS, Weijers D, Vaucheret H, Nussaume L, Crespi MD, Maizel A., Plant Cell 22(4), 2010
PMID: 20363771
Non-redundant functions of two proline dehydrogenase isoforms in Arabidopsis.
Funck D, Eckard S, Müller G., BMC Plant Biol 10(), 2010
PMID: 20403182
Arabidopsis stromal 70-kDa heat shock proteins are essential for chloroplast development.
Latijnhouwers M, Xu XM, Møller SG., Planta 232(3), 2010
PMID: 20506024
The conserved splicing factor SUA controls alternative splicing of the developmental regulator ABI3 in Arabidopsis.
Sugliani M, Brambilla V, Clerkx EJ, Koornneef M, Soppe WJ., Plant Cell 22(6), 2010
PMID: 20525852
The TOR pathway modulates the structure of cell walls in Arabidopsis.
Leiber RM, John F, Verhertbruggen Y, Diet A, Knox JP, Ringli C., Plant Cell 22(6), 2010
PMID: 20530756
Tethering factors required for cytokinesis in Arabidopsis.
Thellmann M, Rybak K, Thiele K, Wanner G, Assaad FF., Plant Physiol 154(2), 2010
PMID: 20713617
Phosphoenolpyruvate provision to plastids is essential for gametophyte and sporophyte development in Arabidopsis thaliana.
Prabhakar V, Löttgert T, Geimer S, Dörmann P, Krüger S, Vijayakumar V, Schreiber L, Göbel C, Feussner K, Feussner I, Marin K, Staehr P, Bell K, Flügge UI, Häusler RE., Plant Cell 22(8), 2010
PMID: 20798327
Lack of α-xylosidase activity in Arabidopsis alters xyloglucan composition and results in growth defects.
Sampedro J, Pardo B, Gianzo C, Guitián E, Revilla G, Zarra I., Plant Physiol 154(3), 2010
PMID: 20801759
Kinetic analyses of plant water relocation using deuterium as tracer - reduced water flux of Arabidopsis pip2 aquaporin knockout mutants.
Da Ines O, Graf W, Franck KI, Albert A, Winkler JB, Scherb H, Stichler W, Schäffner AR., Plant Biol (Stuttg) 12 Suppl 1(), 2010
PMID: 20712628
The Arabidopsis exocyst complex is involved in cytokinesis and cell plate maturation.
Fendrych M, Synek L, Pecenková T, Toupalová H, Cole R, Drdová E, Nebesárová J, Sedinová M, Hála M, Fowler JE, Zársky V., Plant Cell 22(9), 2010
PMID: 20870962
Mitochondrial malate dehydrogenase lowers leaf respiration and alters photorespiration and plant growth in Arabidopsis.
Tomaz T, Bagard M, Pracharoenwattana I, Lindén P, Lee CP, Carroll AJ, Ströher E, Smith SM, Gardeström P, Millar AH., Plant Physiol 154(3), 2010
PMID: 20876337
Reverse genetics in eukaryotes.
Hardy S, Legagneux V, Audic Y, Paillard L., Biol Cell 102(10), 2010
PMID: 20812916
The Arabidopsis thylakoid protein PAM68 is required for efficient D1 biogenesis and photosystem II assembly.
Armbruster U, Zühlke J, Rengstl B, Kreller R, Makarenko E, Rühle T, Schünemann D, Jahns P, Weisshaar B, Nickelsen J, Leister D., Plant Cell 22(10), 2010
PMID: 20923938
RAD5A, RECQ4A, and MUS81 have specific functions in homologous recombination and define different pathways of DNA repair in Arabidopsis thaliana.
Mannuss A, Dukowic-Schulze S, Suer S, Hartung F, Pacher M, Puchta H., Plant Cell 22(10), 2010
PMID: 20971895
Herbivore-induced and floral homoterpene volatiles are biosynthesized by a single P450 enzyme (CYP82G1) in Arabidopsis.
Lee S, Badieyan S, Bevan DR, Herde M, Gatz C, Tholl D., Proc Natl Acad Sci U S A 107(49), 2010
PMID: 21088219
LAP6/POLYKETIDE SYNTHASE A and LAP5/POLYKETIDE SYNTHASE B encode hydroxyalkyl α-pyrone synthases required for pollen development and sporopollenin biosynthesis in Arabidopsis thaliana.
Kim SS, Grienenberger E, Lallemand B, Colpitts CC, Kim SY, Souza Cde A, Geoffroy P, Heintz D, Krahn D, Kaiser M, Kombrink E, Heitz T, Suh DY, Legrand M, Douglas CJ., Plant Cell 22(12), 2010
PMID: 21193570
Analysis of TETRAKETIDE α-PYRONE REDUCTASE function in Arabidopsis thaliana reveals a previously unknown, but conserved, biochemical pathway in sporopollenin monomer biosynthesis.
Grienenberger E, Kim SS, Lallemand B, Geoffroy P, Heintz D, Souza Cde A, Heitz T, Douglas CJ, Legrand M., Plant Cell 22(12), 2010
PMID: 21193572
Highly boron deficiency-tolerant plants generated by enhanced expression of NIP5;1, a boric acid channel.
Kato Y, Miwa K, Takano J, Wada M, Fujiwara T., Plant Cell Physiol 50(1), 2009
PMID: 19017629
AtAMT1;4, a pollen-specific high-affinity ammonium transporter of the plasma membrane in Arabidopsis.
Yuan L, Graff L, Loqué D, Kojima S, Tsuchiya YN, Takahashi H, von Wirén N., Plant Cell Physiol 50(1), 2009
PMID: 19073648
Subunit compositions of the RNA-silencing enzymes Pol IV and Pol V reveal their origins as specialized forms of RNA polymerase II.
Ream TS, Haag JR, Wierzbicki AT, Nicora CD, Norbeck AD, Zhu JK, Hagen G, Guilfoyle TJ, Pasa-Tolić L, Pikaard CS., Mol Cell 33(2), 2009
PMID: 19110459
Genetic technologies for the identification of plant genes controlling environmental stress responses
Papdi Csaba, Joseph MaryPrathiba, Salamó ImmaPérez, Vidal Sabina, Szabados László., Funct Plant Biol 36(8), 2009
PMID: IND44235750
BTB and TAZ domain scaffold proteins perform a crucial function in Arabidopsis development.
Robert HS, Quint A, Brand D, Vivian-Smith A, Offringa R., Plant J 58(1), 2009
PMID: 19054356
STARCH-EXCESS4 is a laforin-like Phosphoglucan phosphatase required for starch degradation in Arabidopsis thaliana.
Kötting O, Santelia D, Edner C, Eicke S, Marthaler T, Gentry MS, Comparot-Moss S, Chen J, Smith AM, Steup M, Ritte G, Zeeman SC., Plant Cell 21(1), 2009
PMID: 19141707
A novel ATM-dependent X-ray-inducible gene is essential for both plant meiosis and gametogenesis.
Dean PJ, Siwiec T, Waterworth WM, Schlögelhofer P, Armstrong SJ, West CE., Plant J 58(5), 2009
PMID: 19187040
GASA5, a regulator of flowering time and stem growth in Arabidopsis thaliana.
Zhang S, Yang C, Peng J, Sun S, Wang X., Plant Mol Biol 69(6), 2009
PMID: 19190987
cpFBPaseII, a novel redox-independent chloroplastic isoform of fructose-1,6-bisphosphatase.
Serrato AJ, Yubero-Serrano EM, Sandalio LM, Muñoz-Blanco J, Chueca A, Caballero JL, Sahrawy M., Plant Cell Environ 32(7), 2009
PMID: 19220782
The Rab GTPase RabA4d regulates pollen tube tip growth in Arabidopsis thaliana.
Szumlanski AL, Nielsen E., Plant Cell 21(2), 2009
PMID: 19208902
Inactivation of genes, encoding tocopherol biosynthetic pathway enzymes, results in oxidative stress in outdoor grown Arabidopsis thaliana.
Semchuk NM, Lushchak OV, Falk J, Krupinska K, Lushchak VI., Plant Physiol Biochem 47(5), 2009
PMID: 19264498
Roles for Arabidopsis CAMTA transcription factors in cold-regulated gene expression and freezing tolerance.
Doherty CJ, Van Buskirk HA, Myers SJ, Thomashow MF., Plant Cell 21(3), 2009
PMID: 19270186
The Arabidopsis RING finger E3 ligase RHA2a is a novel positive regulator of abscisic acid signaling during seed germination and early seedling development.
Bu Q, Li H, Zhao Q, Jiang H, Zhai Q, Zhang J, Wu X, Sun J, Xie Q, Wang D, Li C., Plant Physiol 150(1), 2009
PMID: 19286935
Pheophytin pheophorbide hydrolase (pheophytinase) is involved in chlorophyll breakdown during leaf senescence in Arabidopsis.
Schelbert S, Aubry S, Burla B, Agne B, Kessler F, Krupinska K, Hörtensteiner S., Plant Cell 21(3), 2009
PMID: 19304936
A non-canonical transferred DNA insertion at the BRI1 locus in Arabidopsis thaliana.
Zhao Z, Zhu Y, Erhardt M, Ruan Y, Shen WH., J Integr Plant Biol 51(4), 2009
PMID: 19341406
Loss of chloroplast protease SPPA function alters high light acclimation processes in Arabidopsis thaliana L. (Heynh.).
Wetzel CM, Harmacek LD, Yuan LH, Wopereis JL, Chubb R, Turini P., J Exp Bot 60(6), 2009
PMID: 19349419
A functional analysis of the pyrimidine catabolic pathway in Arabidopsis.
Zrenner R, Riegler H, Marquard CR, Lange PR, Geserick C, Bartosz CE, Chen CT, Slocum RD., New Phytol 183(1), 2009
PMID: 19413687
Characterization of full-length enriched expressed sequence tags of dehydration-treated white fibrous roots of sweetpotato.
Kim SH, Song WK, Kim YH, Kwon SY, Lee HS, Lee IC, Kwak SS., BMB Rep 42(5), 2009
PMID: 19470240
The role of annexin 1 in drought stress in Arabidopsis.
Konopka-Postupolska D, Clark G, Goch G, Debski J, Debski J, Floras K, Cantero A, Fijolek B, Roux S, Hennig J., Plant Physiol 150(3), 2009
PMID: 19482919
Phenome analysis in plant species using loss-of-function and gain-of-function mutants.
Kuromori T, Takahashi S, Kondou Y, Shinozaki K, Matsui M., Plant Cell Physiol 50(7), 2009
PMID: 19502383
Cohesin gene defects may impair sister chromatid alignment and genome stability in Arabidopsis thaliana.
Schubert V, Weissleder A, Ali H, Fuchs J, Lermontova I, Meister A, Schubert I., Chromosoma 118(5), 2009
PMID: 19533160
Three Arabidopsis SnRK2 protein kinases, SRK2D/SnRK2.2, SRK2E/SnRK2.6/OST1 and SRK2I/SnRK2.3, involved in ABA signaling are essential for the control of seed development and dormancy.
Nakashima K, Fujita Y, Kanamori N, Katagiri T, Umezawa T, Kidokoro S, Maruyama K, Yoshida T, Ishiyama K, Kobayashi M, Shinozaki K, Yamaguchi-Shinozaki K., Plant Cell Physiol 50(7), 2009
PMID: 19541597
Arabidopsis DOF transcription factors act redundantly to reduce CONSTANS expression and are essential for a photoperiodic flowering response.
Fornara F, Panigrahi KC, Gissot L, Sauerbrunn N, Rühl M, Jarillo JA, Coupland G., Dev Cell 17(1), 2009
PMID: 19619493
Arabidopsis tRNA adenosine deaminase arginine edits the wobble nucleotide of chloroplast tRNAArg(ACG) and is essential for efficient chloroplast translation.
Delannoy E, Le Ret M, Faivre-Nitschke E, Estavillo GM, Bergdoll M, Taylor NL, Pogson BJ, Small I, Imbault P, Gualberto JM., Plant Cell 21(7), 2009
PMID: 19602623
The Arabidopsis MCM2 gene is essential to embryo development and its over-expression alters root meristem function.
Ni DA, Sozzani R, Blanchet S, Domenichini S, Reuzeau C, Cella R, Bergounioux C, Raynaud C., New Phytol 184(2), 2009
PMID: 19650778
AtObgC, a plant ortholog of bacterial Obg, is a chloroplast-targeting GTPase essential for early embryogenesis.
Bang WY, Hata A, Jeong IS, Umeda T, Masuda T, Chen J, Yoko I, Suwastika IN, Kim DW, Im CH, Lee BH, Lee Y, Lee KW, Shiina T, Bahk JD., Plant Mol Biol 71(4-5), 2009
PMID: 19636801
Starch granule initiation in Arabidopsis requires the presence of either class IV or class III starch synthases.
Szydlowski N, Ragel P, Raynaud S, Lucas MM, Roldán I, Montero M, Muñoz FJ, Ovecka M, Bahaji A, Planchot V, Pozueta-Romero J, D'Hulst C, Mérida A., Plant Cell 21(8), 2009
PMID: 19666739
CNI1/ATL31, a RING-type ubiquitin ligase that functions in the carbon/nitrogen response for growth phase transition in Arabidopsis seedlings.
Sato T, Maekawa S, Yasuda S, Sonoda Y, Katoh E, Ichikawa T, Nakazawa M, Seki M, Shinozaki K, Matsui M, Goto DB, Ikeda A, Yamaguchi J., Plant J 60(5), 2009
PMID: 19702666
Coordination of plastid protein import and nuclear gene expression by plastid-to-nucleus retrograde signaling.
Kakizaki T, Matsumura H, Nakayama K, Che FS, Terauchi R, Inaba T., Plant Physiol 151(3), 2009
PMID: 19726569
Phage-type RNA polymerase RPOTmp performs gene-specific transcription in mitochondria of Arabidopsis thaliana.
Kühn K, Richter U, Meyer EH, Delannoy E, de Longevialle AF, O'Toole N, Börner T, Millar AH, Small ID, Whelan J., Plant Cell 21(9), 2009
PMID: 19783760
OWL1: an Arabidopsis J-domain protein involved in perception of very low light fluences.
Kneissl J, Wachtler V, Chua NH, Bolle C., Plant Cell 21(10), 2009
PMID: 19808946
In vivo studies on the roles of Tic55-related proteins in chloroplast protein import in Arabidopsis thaliana.
Boij P, Patel R, Garcia C, Jarvis P, Aronsson H., Mol Plant 2(6), 2009
PMID: 19995737
Eukaryotic GCP1 is a conserved mitochondrial protein required for progression of embryo development beyond the globular stage in Arabidopsis thaliana.
Haussuehl K, Huesgen PF, Meier M, Dessi P, Glaser E, Adamski J, Adamska I., Biochem J 423(3), 2009
PMID: 19694617
A high-density collection of EMS-induced mutations for TILLING in Landsberg erecta genetic background of Arabidopsis.
Martín B, Ramiro M, Martínez-Zapater JM, Alonso-Blanco C., BMC Plant Biol 9(), 2009
PMID: 20003424
The D-type cyclin CYCD4;1 modulates lateral root density in Arabidopsis by affecting the basal meristem region.
Nieuwland J, Maughan S, Dewitte W, Scofield S, Sanz L, Murray JA., Proc Natl Acad Sci U S A 106(52), 2009
PMID: 20018777
Arabidopsis Tic62 and ferredoxin-NADP(H) oxidoreductase form light-regulated complexes that are integrated into the chloroplast redox poise.
Benz JP, Stengel A, Lintala M, Lee YH, Weber A, Philippar K, Gügel IL, Kaieda S, Ikegami T, Mulo P, Soll J, Bölter B., Plant Cell 21(12), 2009
PMID: 20040542
Duplicated P5CS genes of Arabidopsis play distinct roles in stress regulation and developmental control of proline biosynthesis.
Székely G, Abrahám E, Cséplo A, Rigó G, Zsigmond L, Csiszár J, Ayaydin F, Strizhov N, Jásik J, Schmelzer E, Koncz C, Szabados L., Plant J 53(1), 2008
PMID: 17971042
Arabidopsis extra-large G proteins (XLGs) regulate root morphogenesis.
Ding L, Pandey S, Assmann SM., Plant J 53(2), 2008
PMID: 17999646
Degradation of the cyclin-dependent kinase inhibitor KRP1 is regulated by two different ubiquitin E3 ligases.
Ren H, Santner A, del Pozo JC, Murray JA, Estelle M., Plant J 53(5), 2008
PMID: 18005227
PHYTOCHROME KINASE SUBSTRATE1 regulates root phototropism and gravitropism.
Boccalandro HE, De Simone SN, Bergmann-Honsberger A, Schepens I, Fankhauser C, Casal JJ., Plant Physiol 146(1), 2008
PMID: 18024556
Redirection of the phenylpropanoid pathway to feruloyl malate in Arabidopsis mutants deficient for cinnamoyl-CoA reductase 1.
Mir Derikvand M, Sierra JB, Ruel K, Pollet B, Do CT, Thévenin J, Buffard D, Jouanin L, Lapierre C., Planta 227(5), 2008
PMID: 18046574
The gibberellin biosynthetic genes AtGA20ox1 and AtGA20ox2 act, partially redundantly, to promote growth and development throughout the Arabidopsis life cycle.
Rieu I, Ruiz-Rivero O, Fernandez-Garcia N, Griffiths J, Powers SJ, Gong F, Linhartova T, Eriksson S, Nilsson O, Thomas SG, Phillips AL, Hedden P., Plant J 53(3), 2008
PMID: 18069939
Restricting glutathione biosynthesis to the cytosol is sufficient for normal plant development.
Pasternak M, Lim B, Wirtz M, Hell R, Cobbett CS, Meyer AJ., Plant J 53(6), 2008
PMID: 18088327
Functions of chloroplastic adenylate kinases in Arabidopsis.
Lange PR, Geserick C, Tischendorf G, Zrenner R., Plant Physiol 146(2), 2008
PMID: 18162585
Arabidopsis branched-chain aminotransferase 3 functions in both amino acid and glucosinolate biosynthesis.
Knill T, Schuster J, Reichelt M, Gershenzon J, Binder S., Plant Physiol 146(3), 2008
PMID: 18162591
Systems approaches to identifying gene regulatory networks in plants.
Long TA, Brady SM, Benfey PN., Annu Rev Cell Dev Biol 24(), 2008
PMID: 18616425
Functional analysis of an Arabidopsis heat-shock transcription factor HsfA3 in the transcriptional cascade downstream of the DREB2A stress-regulatory system.
Yoshida T, Sakuma Y, Todaka D, Maruyama K, Qin F, Mizoi J, Kidokoro S, Fujita Y, Shinozaki K, Yamaguchi-Shinozaki K., Biochem Biophys Res Commun 368(3), 2008
PMID: 18261981
A subtilisin-like serine protease essential for mucilage release from Arabidopsis seed coats.
Rautengarten C, Usadel B, Neumetzler L, Hartmann J, Büssis D, Altmann T., Plant J 54(3), 2008
PMID: 18266922
A LysM receptor-like kinase plays a critical role in chitin signaling and fungal resistance in Arabidopsis.
Wan J, Zhang XC, Neece D, Ramonell KM, Clough S, Kim SY, Stacey MG, Stacey G., Plant Cell 20(2), 2008
PMID: 18263776
Degradation of a polyadenylated rRNA maturation by-product involves one of the three RRP6-like proteins in Arabidopsis thaliana.
Lange H, Holec S, Cognat V, Pieuchot L, Le Ret M, Canaday J, Gagliardi D., Mol Cell Biol 28(9), 2008
PMID: 18285452
Dual function of Arabidopsis glucan synthase-like genes GSL8 and GSL10 in male gametophyte development and plant growth.
Töller A, Brownfield L, Neu C, Twell D, Schulze-Lefert P., Plant J 54(5), 2008
PMID: 18315544
Light regulation of CaS, a novel phosphoprotein in the thylakoid membrane of Arabidopsis thaliana.
Vainonen JP, Sakuragi Y, Stael S, Tikkanen M, Allahverdiyeva Y, Paakkarinen V, Aro E, Suorsa M, Scheller HV, Vener AV, Aro EM., FEBS J 275(8), 2008
PMID: 18331354
Cell wall modifications in Arabidopsis plants with altered alpha-L-arabinofuranosidase activity.
Chávez Montes RA, Ranocha P, Martinez Y, Minic Z, Jouanin L, Marquis M, Saulnier L, Fulton LM, Cobbett CS, Bitton F, Renou JP, Jauneau A, Goffner D., Plant Physiol 147(1), 2008
PMID: 18344421
RLM3, a TIR domain encoding gene involved in broad-range immunity of Arabidopsis to necrotrophic fungal pathogens.
Staal J, Kaliff M, Dewaele E, Persson M, Dixelius C., Plant J 55(2), 2008
PMID: 18397376
A genome-wide functional investigation into the roles of receptor-like proteins in Arabidopsis.
Wang G, Ellendorff U, Kemp B, Mansfield JW, Forsyth A, Mitchell K, Bastas K, Liu CM, Woods-Tör A, Zipfel C, de Wit PJ, Jones JD, Tör M, Thomma BP., Plant Physiol 147(2), 2008
PMID: 18434605
AtCYP38 ensures early biogenesis, correct assembly and sustenance of photosystem II.
Sirpiö S, Khrouchtchova A, Allahverdiyeva Y, Hansson M, Fristedt R, Vener AV, Scheller HV, Jensen PE, Haldrup A, Aro EM., Plant J 55(4), 2008
PMID: 18445132
Functional analysis of a predicted flavonol synthase gene family in Arabidopsis.
Owens DK, Alerding AB, Crosby KC, Bandara AB, Westwood JH, Winkel BS., Plant Physiol 147(3), 2008
PMID: 18467451
An exocyst complex functions in plant cell growth in Arabidopsis and tobacco.
Hála M, Cole R, Synek L, Drdová E, Pecenková T, Nordheim A, Lamkemeyer T, Madlung J, Hochholdinger F, Fowler JE, Zárský V., Plant Cell 20(5), 2008
PMID: 18492870
Domain II mutations in CRANE/IAA18 suppress lateral root formation and affect shoot development in Arabidopsis thaliana.
Uehara T, Okushima Y, Mimura T, Tasaka M, Fukaki H., Plant Cell Physiol 49(7), 2008
PMID: 18505759
A 125 kDa RNase E/G-like protein is present in plastids and is essential for chloroplast development and autotrophic growth in Arabidopsis.
Mudd EA, Sullivan S, Gisby MF, Mironov A, Kwon CS, Chung WI, Day A., J Exp Bot 59(10), 2008
PMID: 18515828
Dual roles of the nuclear cap-binding complex and SERRATE in pre-mRNA splicing and microRNA processing in Arabidopsis thaliana.
Laubinger S, Sachsenberg T, Zeller G, Busch W, Lohmann JU, Rätsch G, Weigel D., Proc Natl Acad Sci U S A 105(25), 2008
PMID: 18550839
RETARDED GROWTH OF EMBRYO1, a new basic helix-loop-helix protein, expresses in endosperm to control embryo growth.
Kondou Y, Nakazawa M, Kawashima M, Ichikawa T, Yoshizumi T, Suzuki K, Ishikawa A, Koshi T, Matsui R, Muto S, Matsui M., Plant Physiol 147(4), 2008
PMID: 18567831
Arabidopsis XXT5 gene encodes a putative alpha-1,6-xylosyltransferase that is involved in xyloglucan biosynthesis.
Zabotina OA, van de Ven WT, Freshour G, Drakakaki G, Cavalier D, Mouille G, Hahn MG, Keegstra K, Raikhel NV., Plant J 56(1), 2008
PMID: 18557833
Involvement of sphingosine kinase in plant cell signalling.
Worrall D, Liang YK, Alvarez S, Holroyd GH, Spiegel S, Panagopulos M, Gray JE, Hetherington AM., Plant J 56(1), 2008
PMID: 18557834
AGL61 interacts with AGL80 and is required for central cell development in Arabidopsis.
Steffen JG, Kang IH, Portereiko MF, Lloyd A, Drews GN., Plant Physiol 148(1), 2008
PMID: 18599653
Getting the most out of publicly available T-DNA insertion lines.
Ulker B, Peiter E, Dixon DP, Moffat C, Capper R, Bouché N, Edwards R, Sanders D, Knight H, Knight MR., Plant J 56(4), 2008
PMID: 18644000
The Omp85-related chloroplast outer envelope protein OEP80 is essential for viability in Arabidopsis.
Patel R, Hsu SC, Bédard J, Inoue K, Jarvis P., Plant Physiol 148(1), 2008
PMID: 18621981
NADPH-dependent thioredoxin reductase and 2-Cys peroxiredoxins are needed for the protection of Mg-protoporphyrin monomethyl ester cyclase.
Stenbaek A, Hansson A, Wulff RP, Hansson M, Dietz KJ, Jensen PE., FEBS Lett 582(18), 2008
PMID: 18625226
Identification and characterization of Cor413im proteins as novel components of the chloroplast inner envelope.
Okawa K, Nakayama K, Kakizaki T, Yamashita T, Inaba T., Plant Cell Environ 31(10), 2008
PMID: 18643950
ScORK17, a transmembrane receptor-like kinase predominantly expressed in ovules is involved in seed development.
Germain H, Gray-Mitsumune M, Lafleur E, Matton DP., Planta 228(5), 2008
PMID: 18649087
Arabidopsis SOMATIC EMBRYOGENESIS RECEPTOR KINASE proteins serve brassinosteroid-dependent and -independent signaling pathways.
Albrecht C, Russinova E, Kemmerling B, Kwaaitaal M, de Vries SC., Plant Physiol 148(1), 2008
PMID: 18667726
The MADS domain protein DIANA acts together with AGAMOUS-LIKE80 to specify the central cell in Arabidopsis ovules.
Bemer M, Wolters-Arts M, Grossniklaus U, Angenent GC., Plant Cell 20(8), 2008
PMID: 18713950
Sex-biased lethality or transmission of defective transcription machinery in Arabidopsis.
Onodera Y, Nakagawa K, Haag JR, Pikaard D, Mikami T, Ream T, Ito Y, Pikaard CS., Genetics 180(1), 2008
PMID: 18723889
T-DNA-mediated transfer of Agrobacterium tumefaciens chromosomal DNA into plants.
Ulker B, Li Y, Rosso MG, Logemann E, Somssich IE, Weisshaar B., Nat Biotechnol 26(9), 2008
PMID: 18758448
Transcriptional profiling of mature Arabidopsis trichomes reveals that NOECK encodes the MIXTA-like transcriptional regulator MYB106.
Jakoby MJ, Falkenhan D, Mader MT, Brininstool G, Wischnitzki E, Platz N, Hudson A, Hülskamp M, Larkin J, Schnittger A., Plant Physiol 148(3), 2008
PMID: 18805951
Genetic analysis reveals that C19-GA 2-oxidation is a major gibberellin inactivation pathway in Arabidopsis.
Rieu I, Eriksson S, Powers SJ, Gong F, Griffiths J, Woolley L, Benlloch R, Nilsson O, Thomas SG, Hedden P, Phillips AL., Plant Cell 20(9), 2008
PMID: 18805991
A small subfamily of Arabidopsis RADIALIS-LIKE SANT/MYB genes: a link to HOOKLESS1-mediated signal transduction during early morphogenesis.
Hamaguchi A, Yamashino T, Koizumi N, Kiba T, Kiba T, Kojima M, Sakakibara H, Mizuno T., Biosci Biotechnol Biochem 72(10), 2008
PMID: 18838801
Identification and characterization of ADNT1, a novel mitochondrial adenine nucleotide transporter from Arabidopsis.
Palmieri L, Santoro A, Carrari F, Blanco E, Nunes-Nesi A, Arrigoni R, Genchi F, Fernie AR, Palmieri F., Plant Physiol 148(4), 2008
PMID: 18923018
Web-based Arabidopsis functional and structural genomics resources.
Lu Y, Last RL., Arabidopsis Book 6(), 2008
PMID: 22303243
A SNARE complex unique to seed plants is required for protein storage vacuole biogenesis and seed development of Arabidopsis thaliana.
Ebine K, Okatani Y, Uemura T, Goh T, Shoda K, Niihama M, Morita MT, Spitzer C, Otegui MS, Nakano A, Ueda T., Plant Cell 20(11), 2008
PMID: 18984676
A heterocomplex of iron superoxide dismutases defends chloroplast nucleoids against oxidative stress and is essential for chloroplast development in Arabidopsis.
Myouga F, Hosoda C, Umezawa T, Iizumi H, Kuromori T, Motohashi R, Shono Y, Nagata N, Ikeuchi M, Shinozaki K., Plant Cell 20(11), 2008
PMID: 18996978
The MYST histone acetyltransferases are essential for gametophyte development in Arabidopsis.
Latrasse D, Benhamed M, Henry Y, Domenichini S, Kim W, Zhou DX, Delarue M., BMC Plant Biol 8(), 2008
PMID: 19040736
Aconitase plays a role in regulating resistance to oxidative stress and cell death in Arabidopsis and Nicotiana benthamiana.
Moeder W, Del Pozo O, Navarre DA, Martin GB, Klessig DF., Plant Mol Biol 63(2), 2007
PMID: 17013749
GABI-Kat SimpleSearch: an Arabidopsis thaliana T-DNA mutant database with detailed information for confirmed insertions.
Li Y, Rosso MG, Viehoever P, Weisshaar B., Nucleic Acids Res 35(database issue), 2007
PMID: 17062622
A heat-inducible transcription factor, HsfA2, is required for extension of acquired thermotolerance in Arabidopsis.
Charng YY, Liu HC, Liu NY, Chi WT, Wang CN, Chang SH, Wang TT., Plant Physiol 143(1), 2007
PMID: 17085506
The phenotype of soluble starch synthase IV defective mutants of Arabidopsis thaliana suggests a novel function of elongation enzymes in the control of starch granule formation.
Roldán I, Wattebled F, Mercedes Lucas M, Delvallé D, Planchot V, Jiménez S, Pérez R, Ball S, D'Hulst C, Mérida A., Plant J 49(3), 2007
PMID: 17217470
An early nodulin-like protein accumulates in the sieve element plasma membrane of Arabidopsis.
Khan JA, Wang Q, Sjölund RD, Schulz A, Thompson GA., Plant Physiol 143(4), 2007
PMID: 17293437
Arabidopsis BRANCHED1 acts as an integrator of branching signals within axillary buds.
Aguilar-Martínez JA, Poza-Carrión C, Cubas P., Plant Cell 19(2), 2007
PMID: 17307924
The Arabidopsis thaliana homolog of yeast BRE1 has a function in cell cycle regulation during early leaf and root growth.
Fleury D, Himanen K, Cnops G, Nelissen H, Boccardi TM, Maere S, Beemster GT, Neyt P, Anami S, Robles P, Micol JL, Inzé D, Van Lijsebettens M., Plant Cell 19(2), 2007
PMID: 17329565
PIC1, an ancient permease in Arabidopsis chloroplasts, mediates iron transport.
Duy D, Wanner G, Meda AR, von Wirén N, Soll J, Philippar K., Plant Cell 19(3), 2007
PMID: 17337631
Further in vivo studies on the role of the molecular chaperone, Hsp93, in plastid protein import.
Kovacheva S, Bédard J, Wardle A, Patel R, Jarvis P., Plant J 50(2), 2007
PMID: 17376159
A permeable cuticle in Arabidopsis leads to a strong resistance to Botrytis cinerea.
Bessire M, Chassot C, Jacquat AC, Humphry M, Borel S, Petétot JM, Métraux JP, Nawrath C., EMBO J 26(8), 2007
PMID: 17396154
Molecular characterisation of the STRUBBELIG-RECEPTOR FAMILY of genes encoding putative leucine-rich repeat receptor-like kinases in Arabidopsis thaliana.
Eyüboglu B, Pfister K, Haberer G, Chevalier D, Fuchs A, Mayer KF, Schneitz K., BMC Plant Biol 7(), 2007
PMID: 17397538
Sulphite oxidase as key enzyme for protecting plants against sulphur dioxide.
Lang C, Popko J, Wirtz M, Hell R, Herschbach C, Kreuzwieser J, Rennenberg H, Mendel RR, Hänsch R., Plant Cell Environ 30(4), 2007
PMID: 17324231
The DELLA domain of GA INSENSITIVE mediates the interaction with the GA INSENSITIVE DWARF1A gibberellin receptor of Arabidopsis.
Willige BC, Ghosh S, Nill C, Zourelidou M, Dohmann EM, Maier A, Schwechheimer C., Plant Cell 19(4), 2007
PMID: 17416730
Homogalacturonan synthesis in Arabidopsis thaliana requires a Golgi-localized protein with a putative methyltransferase domain.
Mouille G, Ralet MC, Cavelier C, Eland C, Effroy D, Hématy K, McCartney L, Truong HN, Gaudon V, Thibault JF, Marchant A, Höfte H., Plant J 50(4), 2007
PMID: 17425712
Tandem gene arrays: a challenge for functional genomics.
Jander G, Barth C., Trends Plant Sci 12(5), 2007
PMID: 17416543
The nuclear-encoded factor HCF173 is involved in the initiation of translation of the psbA mRNA in Arabidopsis thaliana.
Schult K, Meierhoff K, Paradies S, Töller T, Wolff P, Westhoff P., Plant Cell 19(4), 2007
PMID: 17435084
Characterization of the VIER F-BOX PROTEINE genes from Arabidopsis reveals their importance for plant growth and development.
Schwager KM, Calderon-Villalobos LI, Dohmann EM, Willige BC, Knierer S, Nill C, Schwechheimer C., Plant Cell 19(4), 2007
PMID: 17435085
A bona fide La protein is required for embryogenesis in Arabidopsis thaliana.
Fleurdépine S, Deragon JM, Devic M, Guilleminot J, Bousquet-Antonelli C., Nucleic Acids Res 35(10), 2007
PMID: 17459889
The transcription factor HIG1/MYB51 regulates indolic glucosinolate biosynthesis in Arabidopsis thaliana.
Gigolashvili T, Berger B, Mock HP, Müller C, Weisshaar B, Flügge UI., Plant J 50(5), 2007
PMID: 17461791
Sequence-indexed mutations in maize using the UniformMu transposon-tagging population.
Settles AM, Holding DR, Tan BC, Latshaw SP, Liu J, Suzuki M, Li L, O'Brien BA, Fajardo DS, Wroclawska E, Tseung CW, Lai J, Hunter CT, Avigne WT, Baier J, Messing J, Hannah LC, Koch KE, Becraft PW, Larkins BA, McCarty DR., BMC Genomics 8(), 2007
PMID: 17490480
Arabidopsis VIRE2 INTERACTING PROTEIN2 is required for Agrobacterium T-DNA integration in plants.
Anand A, Krichevsky A, Schornack S, Lahaye T, Tzfira T, Tang Y, Citovsky V, Mysore KS., Plant Cell 19(5), 2007
PMID: 17496122
PRT6/At5g02310 encodes an Arabidopsis ubiquitin ligase of the N-end rule pathway with arginine specificity and is not the CER3 locus.
Garzón M, Eifler K, Faust A, Scheel H, Hofmann K, Koncz C, Yephremov A, Bachmair A., FEBS Lett 581(17), 2007
PMID: 17572409
Arabidopsis cytochrome P450 monooxygenase 71A13 catalyzes the conversion of indole-3-acetaldoxime in camalexin synthesis.
Nafisi M, Goregaoker S, Botanga CJ, Glawischnig E, Olsen CE, Halkier BA, Glazebrook J., Plant Cell 19(6), 2007
PMID: 17573535
Natural variation for sulfate content in Arabidopsis thaliana is highly controlled by APR2.
Loudet O, Saliba-Colombani V, Camilleri C, Calenge F, Gaudon V, Koprivova A, North KA, Kopriva S, Daniel-Vedele F., Nat Genet 39(7), 2007
PMID: 17589509
Nitration of gamma-tocopherol in plant tissues.
Desel C, Hubbermann EM, Schwarz K, Krupinska K., Planta 226(5), 2007
PMID: 17619201
Characterization of seed-specific benzoyloxyglucosinolate mutations in Arabidopsis thaliana.
Kliebenstein DJ, D'Auria JC, Behere AS, Kim JH, Gunderson KL, Breen JN, Lee G, Gershenzon J, Last RL, Jander G., Plant J 51(6), 2007
PMID: 17651367
Toc64/OEP64 is not essential for the efficient import of proteins into chloroplasts in Arabidopsis thaliana.
Aronsson H, Boij P, Patel R, Wardle A, Töpel M, Jarvis P., Plant J 52(1), 2007
PMID: 17655652
The iron-responsive element (IRE)/iron-regulatory protein 1 (IRP1)-cytosolic aconitase iron-regulatory switch does not operate in plants.
Arnaud N, Ravet K, Borlotti A, Touraine B, Boucherez J, Fizames C, Briat JF, Cellier F, Gaymard F., Biochem J 405(3), 2007
PMID: 17437406
NBS1 is involved in DNA repair and plays a synergistic role with ATM in mediating meiotic homologous recombination in plants.
Waterworth WM, Altun C, Armstrong SJ, Roberts N, Dean PJ, Young K, Weil CF, Bray CM, West CE., Plant J 52(1), 2007
PMID: 17672843
A cyclic nucleotide-gated channel is essential for polarized tip growth of pollen.
Frietsch S, Wang YF, Sladek C, Poulsen LR, Romanowsky SM, Schroeder JI, Harper JF., Proc Natl Acad Sci U S A 104(36), 2007
PMID: 17726111
Characterization of Arabidopsis ABCG11/WBC11, an ATP binding cassette (ABC) transporter that is required for cuticular lipid secretion.
Bird D, Beisson F, Brigham A, Shin J, Greer S, Jetter R, Kunst L, Wu X, Yephremov A, Samuels L., Plant J 52(3), 2007
PMID: 17727615
TLP18.3, a novel thylakoid lumen protein regulating photosystem II repair cycle.
Sirpiö S, Allahverdiyeva Y, Suorsa M, Paakkarinen V, Vainonen J, Battchikova N, Aro EM., Biochem J 406(3), 2007
PMID: 17576201
Geranyl diphosphate synthase is required for biosynthesis of gibberellins.
van Schie CC, Ament K, Schmidt A, Lange T, Haring MA, Schuurink RC., Plant J 52(4), 2007
PMID: 17877699
Mitochondrial type-I prohibitins of Arabidopsis thaliana are required for supporting proficient meristem development.
Van Aken O, Pecenková T, van de Cotte B, De Rycke R, Eeckhout D, Fromm H, De Jaeger G, Witters E, Beemster GT, Inzé D, Van Breusegem F., Plant J 52(5), 2007
PMID: 17883375
The Arabidopsis TALE homeobox gene ATH1 controls floral competency through positive regulation of FLC.
Proveniers M, Rutjens B, Brand M, Smeekens S., Plant J 52(5), 2007
PMID: 17908157
The catalytically active tyrosine residues of both SPO11-1 and SPO11-2 are required for meiotic double-strand break induction in Arabidopsis.
Hartung F, Wurz-Wildersinn R, Fuchs J, Schubert I, Suer S, Puchta H., Plant Cell 19(10), 2007
PMID: 17965269
Functional definition of outer membrane proteins involved in preprotein import into mitochondria.
Lister R, Carrie C, Duncan O, Ho LH, Howell KA, Murcha MW, Whelan J., Plant Cell 19(11), 2007
PMID: 17981999
VPS9a, the common activator for two distinct types of Rab5 GTPases, is essential for the development of Arabidopsis thaliana.
Goh T, Uchida W, Arakawa S, Ito E, Dainobu T, Ebine K, Takeuchi M, Sato K, Ueda T, Nakano A., Plant Cell 19(11), 2007
PMID: 18055610
A systems biology approach identifies a R2R3 MYB gene subfamily with distinct and overlapping functions in regulation of aliphatic glucosinolates.
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CONSTANS activates SUPPRESSOR OF OVEREXPRESSION OF CONSTANS 1 through FLOWERING LOCUS T to promote flowering in Arabidopsis.
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The Arabidopsis AtRAD51 gene is dispensable for vegetative development but required for meiosis.
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