Organization of lin genes and IS6100 among different strains of hexachlorocyclohexane-degrading Sphingomonas paucimobilis: Evidence for horizontal gene transfer
Dogra C, Raina V, Pal R, Suar M, Lal S, Gartemann K-H, Holliger C, van der Meer JR, Lal R (2004)
JOURNAL OF BACTERIOLOGY 186(8): 2225-2235.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
Dogra, C;
Raina, V;
Pal, R;
Suar, M;
Lal, S;
Gartemann, Karl-HeinzUniBi ;
Holliger, C;
van der Meer, JR;
Lal, R
Abstract / Bemerkung
The organization of lin genes and IS6100 was studied in three strains of Sphingomonas paucimobilis (1390A, Sp+, and UT26) which degraded hexachlorocyclohexane (HCH) isomers but which had been isolated at different geographical locations. DNA-DNA hybridization data revealed that most of the lin genes in these strains were associated with IS6100, an insertion sequence classified in the IS6 family and initially found in Mycobacterium fortuitum. Eleven, six, and five copies of IS6100 were detected in B90A, Sp+, and UT26, respectively. IS6100 elements in B90A were sequenced from five, one, and one regions of the genomes of 1390A, Sp+, and UT26, respectively, and were found to be identical. DNA-DNA hybridization and DNA sequencing of cosmid clones also revealed that S. paucimobilis B90A contains three and two copies of linX and linA, respectively, compared to only one copy of these genes in strains Sp+ and UT26. Although the copy number and the sequence of the remaining genes of the HCH degradative pathway (linB, linC, linD, and linE) were nearly the same in all strains, there were striking differences in the organization of the linA genes as a result of replacement of portions of DNA sequences by IS6100, which gave them a strange mosaic configuration. Spontaneous deletion of linD and linE from B90A and of IinA from Sp+ occurred and was associated either with deletion of a copy of IS6100 or changes in IS6100 profiles. The evidence gathered in this study, coupled with the observation that the G+C contents of the linA genes are lower than that of the remaining DNA sequence of S. paucimobilis, strongly suggests that all these strains acquired the linA gene through horizontal gene transfer mediated by IS6100. The association of IS6100 with the rest of the lin genes further suggests that IS6100 played a role in shaping the current lin gene organization.
Erscheinungsjahr
2004
Zeitschriftentitel
JOURNAL OF BACTERIOLOGY
Band
186
Ausgabe
8
Seite(n)
2225-2235
ISSN
0021-9193
Page URI
https://pub.uni-bielefeld.de/record/1608141
Zitieren
Dogra C, Raina V, Pal R, et al. Organization of lin genes and IS6100 among different strains of hexachlorocyclohexane-degrading Sphingomonas paucimobilis: Evidence for horizontal gene transfer. JOURNAL OF BACTERIOLOGY. 2004;186(8):2225-2235.
Dogra, C., Raina, V., Pal, R., Suar, M., Lal, S., Gartemann, K. - H., Holliger, C., et al. (2004). Organization of lin genes and IS6100 among different strains of hexachlorocyclohexane-degrading Sphingomonas paucimobilis: Evidence for horizontal gene transfer. JOURNAL OF BACTERIOLOGY, 186(8), 2225-2235. https://doi.org/10.1128/JB.186.8.2225-2235.2004
Dogra, C, Raina, V, Pal, R, Suar, M, Lal, S, Gartemann, Karl-Heinz, Holliger, C, van der Meer, JR, and Lal, R. 2004. “Organization of lin genes and IS6100 among different strains of hexachlorocyclohexane-degrading Sphingomonas paucimobilis: Evidence for horizontal gene transfer”. JOURNAL OF BACTERIOLOGY 186 (8): 2225-2235.
Dogra, C., Raina, V., Pal, R., Suar, M., Lal, S., Gartemann, K. - H., Holliger, C., van der Meer, J. R., and Lal, R. (2004). Organization of lin genes and IS6100 among different strains of hexachlorocyclohexane-degrading Sphingomonas paucimobilis: Evidence for horizontal gene transfer. JOURNAL OF BACTERIOLOGY 186, 2225-2235.
Dogra, C., et al., 2004. Organization of lin genes and IS6100 among different strains of hexachlorocyclohexane-degrading Sphingomonas paucimobilis: Evidence for horizontal gene transfer. JOURNAL OF BACTERIOLOGY, 186(8), p 2225-2235.
C. Dogra, et al., “Organization of lin genes and IS6100 among different strains of hexachlorocyclohexane-degrading Sphingomonas paucimobilis: Evidence for horizontal gene transfer”, JOURNAL OF BACTERIOLOGY, vol. 186, 2004, pp. 2225-2235.
Dogra, C., Raina, V., Pal, R., Suar, M., Lal, S., Gartemann, K.-H., Holliger, C., van der Meer, J.R., Lal, R.: Organization of lin genes and IS6100 among different strains of hexachlorocyclohexane-degrading Sphingomonas paucimobilis: Evidence for horizontal gene transfer. JOURNAL OF BACTERIOLOGY. 186, 2225-2235 (2004).
Dogra, C, Raina, V, Pal, R, Suar, M, Lal, S, Gartemann, Karl-Heinz, Holliger, C, van der Meer, JR, and Lal, R. “Organization of lin genes and IS6100 among different strains of hexachlorocyclohexane-degrading Sphingomonas paucimobilis: Evidence for horizontal gene transfer”. JOURNAL OF BACTERIOLOGY 186.8 (2004): 2225-2235.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
EMBL
3 Einträge gefunden, die diesen Artikel zitieren
Sphingomonas paucimobilis ORFA (orfA), ORFB (orfB), ORFC (orfC), ORFD (orfD), ORFE (orfE), ORFF (orfF), ORFG (orfG), ORFH (orfH), LinX1 (linX1), LinX2 (linX2), and LinA (linA) genes, complete cds; insertion sequence IS6100A, complete sequence; ORFJ' (orfJ') and ORFK (orfK) genes, complete cds; insertion sequence IS6100B, complete sequence; LinC (linC) gene, complete cds; insertion sequence IS6100C, complete sequence; and 'ORFN ('orfN), ORFO (orfO), ORFP (orfP), ORFQ (orfQ), ORFR (orfR), ORFS (orfS), ORFT (orfT), ORFU (orfU), ORFV (orfV), ORFW (orfW), ORFX (orfX), and ORFY (orfY) genes, complete cds. (EMBL: AY331258)
Sequence length: 41034
Download in FASTA format
Sequence length: 41034
Download in FASTA format
Sphingomonas paucimobilis hypothetical TonB-dependent receptor gene, partial cds; LinR (linR), hydroquinone meta-cleavage dioxygenase (linE), b-ketoadipate-enol-lactone hydrolase, carboxylesterase, conserved hypothetical protein, and 2,5-dichlorohydroquinone reductive dechlorinase (linD) genes, complete cds; and insertion sequence IS6100 TnpA4 (tnpA4) gene, complete cds. (EMBL: AY334273)
Sequence length: 7808
Download in FASTA format
Sequence length: 7808
Download in FASTA format
UNIPROT
35 Einträge gefunden, die diesen Artikel zitieren von denen 10 angezeigt werden
2,5-dichlorohydroquinone reductive dechlorinase (UNIPROT: Q6VPF1)
Organism: Sphingomonas paucimobilis
Download in FASTA format
Organism: Sphingomonas paucimobilis
Download in FASTA format
Hypothetical TonB-dependent receptor (UNIPROT: Q6VPF7)
Organism: Sphingomonas paucimobilis
Download in FASTA format
Organism: Sphingomonas paucimobilis
Download in FASTA format
63 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
Comparative Genomics of Degradative Novosphingobium Strains With Special Reference to Microcystin-Degrading Novosphingobium sp. THN1.
Wang J, Wang C, Li J, Bai P, Li Q, Shen M, Li R, Li T, Zhao J., Front Microbiol 9(), 2018
PMID: 30319567
Wang J, Wang C, Li J, Bai P, Li Q, Shen M, Li R, Li T, Zhao J., Front Microbiol 9(), 2018
PMID: 30319567
Metagenomic Analysis of a Complex Community Present in Pond Sediment.
Negi V, Lal R., J Genomics 5(), 2017
PMID: 28348642
Negi V, Lal R., J Genomics 5(), 2017
PMID: 28348642
Synergistic rhizosphere degradation of γ-hexachlorocyclohexane (lindane) through the combinatorial plant-fungal action.
Asemoloye MD, Ahmad R, Jonathan SG., PLoS One 12(8), 2017
PMID: 28859100
Asemoloye MD, Ahmad R, Jonathan SG., PLoS One 12(8), 2017
PMID: 28859100
Genome Organization of Sphingobium indicum B90A: An Archetypal Hexachlorocyclohexane (HCH) Degrading Genotype.
Verma H, Bajaj A, Kumar R, Kaur J, Anand S, Nayyar N, Puri A, Singh Y, Khurana JP, Lal R., Genome Biol Evol 9(9), 2017
PMID: 28922869
Verma H, Bajaj A, Kumar R, Kaur J, Anand S, Nayyar N, Puri A, Singh Y, Khurana JP, Lal R., Genome Biol Evol 9(9), 2017
PMID: 28922869
Biodegradability of HCH in agricultural soils from Guadeloupe (French West Indies): identification of the lin genes involved in the HCH degradation pathway.
Laquitaine L, Durimel A, de Alencastro LF, Jean-Marius C, Gros O, Gaspard S., Environ Sci Pollut Res Int 23(1), 2016
PMID: 26686518
Laquitaine L, Durimel A, de Alencastro LF, Jean-Marius C, Gros O, Gaspard S., Environ Sci Pollut Res Int 23(1), 2016
PMID: 26686518
Bacterial diversity and real-time PCR based assessment of linA and linB gene distribution at hexachlorocyclohexane contaminated sites.
Lal D, Jindal S, Kumari H, Jit S, Nigam A, Sharma P, Kumari K, Lal R., J Basic Microbiol 55(3), 2015
PMID: 24002962
Lal D, Jindal S, Kumari H, Jit S, Nigam A, Sharma P, Kumari K, Lal R., J Basic Microbiol 55(3), 2015
PMID: 24002962
Biodegradation of dichlorodiphenyltrichloroethanes (DDTs) and hexachlorocyclohexanes (HCHs) with plant and nutrients and their effects on the microbial ecological kinetics.
Sun G, Zhang X, Hu Q, Zhang H, Zhang D, Li G., Microb Ecol 69(2), 2015
PMID: 25213654
Sun G, Zhang X, Hu Q, Zhang H, Zhang D, Li G., Microb Ecol 69(2), 2015
PMID: 25213654
Insights into Ongoing Evolution of the Hexachlorocyclohexane Catabolic Pathway from Comparative Genomics of Ten Sphingomonadaceae Strains.
Pearce SL, Oakeshott JG, Pandey G., G3 (Bethesda) 5(6), 2015
PMID: 25850427
Pearce SL, Oakeshott JG, Pandey G., G3 (Bethesda) 5(6), 2015
PMID: 25850427
Metabolic pathway involved in 2-methyl-6-ethylaniline degradation by Sphingobium sp. strain MEA3-1 and cloning of the novel flavin-dependent monooxygenase system meaBA.
Dong W, Chen Q, Hou Y, Li S, Zhuang K, Huang F, Zhou J, Li Z, Wang J, Fu L, Zhang Z, Huang Y, Wang F, Cui Z., Appl Environ Microbiol 81(24), 2015
PMID: 26386060
Dong W, Chen Q, Hou Y, Li S, Zhuang K, Huang F, Zhou J, Li Z, Wang J, Fu L, Zhang Z, Huang Y, Wang F, Cui Z., Appl Environ Microbiol 81(24), 2015
PMID: 26386060
Functional screening of enzymes and bacteria for the dechlorination of hexachlorocyclohexane by a high-throughput colorimetric assay.
Sharma P, Jindal S, Bala K, Kumari K, Niharika N, Kaur J, Pandey G, Pandey R, Russell RJ, Oakeshott JG, Lal R., Biodegradation 25(2), 2014
PMID: 23740574
Sharma P, Jindal S, Bala K, Kumari K, Niharika N, Kaur J, Pandey G, Pandey R, Russell RJ, Oakeshott JG, Lal R., Biodegradation 25(2), 2014
PMID: 23740574
Reconstructing an ancestral genotype of two hexachlorocyclohexane-degrading Sphingobium species using metagenomic sequence data.
Sangwan N, Verma H, Kumar R, Negi V, Lax S, Khurana P, Khurana JP, Gilbert JA, Lal R., ISME J 8(2), 2014
PMID: 24030592
Sangwan N, Verma H, Kumar R, Negi V, Lax S, Khurana P, Khurana JP, Gilbert JA, Lal R., ISME J 8(2), 2014
PMID: 24030592
Whole genome sequencing and analysis reveal insights into the genetic structure, diversity and evolutionary relatedness of luxI and luxR homologs in bacteria belonging to the Sphingomonadaceae family.
Gan HM, Gan HY, Ahmad NH, Aziz NA, Hudson AO, Savka MA., Front Cell Infect Microbiol 4(), 2014
PMID: 25621282
Gan HM, Gan HY, Ahmad NH, Aziz NA, Hudson AO, Savka MA., Front Cell Infect Microbiol 4(), 2014
PMID: 25621282
Functional characterization of diverse ring-hydroxylating oxygenases and induction of complex aromatic catabolic gene clusters in Sphingobium sp. PNB.
Khara P, Roy M, Chakraborty J, Ghosal D, Dutta TK., FEBS Open Bio 4(), 2014
PMID: 24918041
Khara P, Roy M, Chakraborty J, Ghosal D, Dutta TK., FEBS Open Bio 4(), 2014
PMID: 24918041
Bioreactor study employing bacteria with enhanced activity toward cyanobacterial toxins microcystins.
Dziga D, Lisznianska M, Wladyka B., Toxins (Basel) 6(8), 2014
PMID: 25123557
Dziga D, Lisznianska M, Wladyka B., Toxins (Basel) 6(8), 2014
PMID: 25123557
Detection of variants of the pRAS3, pAB5S9, and pSN254 plasmids in Aeromonas salmonicida subsp. salmonicida: multidrug resistance, interspecies exchanges, and plasmid reshaping.
Vincent AT, Trudel MV, Paquet VE, Boyle B, Tanaka KH, Dallaire-Dufresne S, Daher RK, Frenette M, Derome N, Charette SJ., Antimicrob Agents Chemother 58(12), 2014
PMID: 25267667
Vincent AT, Trudel MV, Paquet VE, Boyle B, Tanaka KH, Dallaire-Dufresne S, Daher RK, Frenette M, Derome N, Charette SJ., Antimicrob Agents Chemother 58(12), 2014
PMID: 25267667
Comparative genomic analysis of nine Sphingobium strains: insights into their evolution and hexachlorocyclohexane (HCH) degradation pathways.
Verma H, Kumar R, Oldach P, Sangwan N, Khurana JP, Gilbert JA, Lal R., BMC Genomics 15(), 2014
PMID: 25418849
Verma H, Kumar R, Oldach P, Sangwan N, Khurana JP, Gilbert JA, Lal R., BMC Genomics 15(), 2014
PMID: 25418849
Draft Genome Sequence of Ralstonia sp. Strain GA3-3, Isolated from Australian Suburban Soil.
Pearce SL, Pushiri H, Oakeshott JG, Russell RJ, Pandey G., Genome Announc 1(4), 2013
PMID: 23833131
Pearce SL, Pushiri H, Oakeshott JG, Russell RJ, Pandey G., Genome Announc 1(4), 2013
PMID: 23833131
Draft Genome Sequence of Pandoraea sp. Strain SD6-2, Isolated from Lindane-Contaminated Australian Soil.
Pushiri H, Pearce SL, Oakeshott JG, Russell RJ, Pandey G., Genome Announc 1(4), 2013
PMID: 23833132
Pushiri H, Pearce SL, Oakeshott JG, Russell RJ, Pandey G., Genome Announc 1(4), 2013
PMID: 23833132
Genome Sequence of Novosphingobium lindaniclasticum LE124T, Isolated from a Hexachlorocyclohexane Dumpsite.
Saxena A, Nayyar N, Sangwan N, Kumari R, Khurana JP, Lal R., Genome Announc 1(5), 2013
PMID: 24029761
Saxena A, Nayyar N, Sangwan N, Kumari R, Khurana JP, Lal R., Genome Announc 1(5), 2013
PMID: 24029761
Draft Genome Sequence of Sphingobium sp. Strain HDIPO4, an Avid Degrader of Hexachlorocyclohexane.
Mukherjee U, Kumar R, Mahato NK, Khurana JP, Lal R., Genome Announc 1(5), 2013
PMID: 24051321
Mukherjee U, Kumar R, Mahato NK, Khurana JP, Lal R., Genome Announc 1(5), 2013
PMID: 24051321
Draft Genome Sequence of a Hexachlorocyclohexane-Degrading Bacterium, Sphingobium baderi Strain LL03T.
Kaur J, Verma H, Tripathi C, Khurana JP, Lal R., Genome Announc 1(5), 2013
PMID: 24051322
Kaur J, Verma H, Tripathi C, Khurana JP, Lal R., Genome Announc 1(5), 2013
PMID: 24051322
Organochlorine pesticide residues in drinking water in the rural areas of Haryana, India.
Kaushik CP, Sharma HR, Kaushik A., Environ Monit Assess 184(1), 2012
PMID: 21409364
Kaushik CP, Sharma HR, Kaushik A., Environ Monit Assess 184(1), 2012
PMID: 21409364
Horizontal transfer of dehalogenase genes involved in the catalysis of chlorinated compounds: evidence and ecological role.
Liang B, Jiang J, Zhang J, Zhao Y, Li S., Crit Rev Microbiol 38(2), 2012
PMID: 21967404
Liang B, Jiang J, Zhang J, Zhao Y, Li S., Crit Rev Microbiol 38(2), 2012
PMID: 21967404
Genome sequence of Sphingobium indicum B90A, a hexachlorocyclohexane-degrading bacterium.
Anand S, Sangwan N, Lata P, Kaur J, Dua A, Singh AK, Verma M, Kaur J, Khurana JP, Khurana P, Mathur S, Lal R., J Bacteriol 194(16), 2012
PMID: 22843598
Anand S, Sangwan N, Lata P, Kaur J, Dua A, Singh AK, Verma M, Kaur J, Khurana JP, Khurana P, Mathur S, Lal R., J Bacteriol 194(16), 2012
PMID: 22843598
Comparative metagenomic analysis of soil microbial communities across three hexachlorocyclohexane contamination levels.
Sangwan N, Lata P, Dwivedi V, Singh A, Niharika N, Kaur J, Anand S, Malhotra J, Jindal S, Nigam A, Lal D, Dua A, Saxena A, Garg N, Verma M, Kaur J, Mukherjee U, Gilbert JA, Dowd SE, Raman R, Khurana P, Khurana JP, Lal R., PLoS One 7(9), 2012
PMID: 23029440
Sangwan N, Lata P, Dwivedi V, Singh A, Niharika N, Kaur J, Anand S, Malhotra J, Jindal S, Nigam A, Lal D, Dua A, Saxena A, Garg N, Verma M, Kaur J, Mukherjee U, Gilbert JA, Dowd SE, Raman R, Khurana P, Khurana JP, Lal R., PLoS One 7(9), 2012
PMID: 23029440
Evaluation of hexachlorocyclohexane contamination from the last lindane production plant operating in India.
Jit S, Dadhwal M, Kumari H, Jindal S, Kaur J, Lata P, Niharika N, Lal D, Garg N, Gupta SK, Sharma P, Bala K, Singh A, Vijgen J, Weber R, Lal R., Environ Sci Pollut Res Int 18(4), 2011
PMID: 20967504
Jit S, Dadhwal M, Kumari H, Jindal S, Kaur J, Lata P, Niharika N, Lal D, Garg N, Gupta SK, Sharma P, Bala K, Singh A, Vijgen J, Weber R, Lal R., Environ Sci Pollut Res Int 18(4), 2011
PMID: 20967504
The evolution of new enzyme function: lessons from xenobiotic metabolizing bacteria versus insecticide-resistant insects.
Russell RJ, Scott C, Jackson CJ, Pandey R, Pandey G, Taylor MC, Coppin CW, Liu JW, Oakeshott JG., Evol Appl 4(2), 2011
PMID: 25567970
Russell RJ, Scott C, Jackson CJ, Pandey R, Pandey G, Taylor MC, Coppin CW, Liu JW, Oakeshott JG., Evol Appl 4(2), 2011
PMID: 25567970
Purification and characterization of hydroquinone dioxygenase from Sphingomonas sp. strain TTNP3.
Kolvenbach BA, Lenz M, Benndorf D, Rapp E, Fousek J, Vlcek C, Schäffer A, Gabriel FL, Kohler HP, Corvini PF., AMB Express 1(1), 2011
PMID: 21906340
Kolvenbach BA, Lenz M, Benndorf D, Rapp E, Fousek J, Vlcek C, Schäffer A, Gabriel FL, Kohler HP, Corvini PF., AMB Express 1(1), 2011
PMID: 21906340
Biochemistry of microbial degradation of hexachlorocyclohexane and prospects for bioremediation.
Lal R, Pandey G, Sharma P, Kumari K, Malhotra S, Pandey R, Raina V, Kohler HP, Holliger C, Jackson C, Oakeshott JG., Microbiol Mol Biol Rev 74(1), 2010
PMID: 20197499
Lal R, Pandey G, Sharma P, Kumari K, Malhotra S, Pandey R, Raina V, Kohler HP, Holliger C, Jackson C, Oakeshott JG., Microbiol Mol Biol Rev 74(1), 2010
PMID: 20197499
The genes coding for the conversion of carbazole to catechol are flanked by IS6100 elements in Sphingomonas sp. strain XLDN2-5.
Gai Z, Wang X, Liu X, Tai C, Tang H, He X, Wu G, Deng Z, Xu P., PLoS One 5(4), 2010
PMID: 20368802
Gai Z, Wang X, Liu X, Tai C, Tang H, He X, Wu G, Deng Z, Xu P., PLoS One 5(4), 2010
PMID: 20368802
Molecular characteristics of xenobiotic-degrading sphingomonads.
Stolz A., Appl Microbiol Biotechnol 81(5), 2009
PMID: 19002456
Stolz A., Appl Microbiol Biotechnol 81(5), 2009
PMID: 19002456
Sphingobium ummariense sp. nov., a hexachlorocyclohexane (HCH)-degrading bacterium, isolated from HCH-contaminated soil.
Singh A, Lal R., Int J Syst Evol Microbiol 59(pt 1), 2009
PMID: 19126742
Singh A, Lal R., Int J Syst Evol Microbiol 59(pt 1), 2009
PMID: 19126742
Proposal of biostimulation for hexachlorocyclohexane (HCH)-decontamination and characterization of culturable bacterial community from high-dose point HCH-contaminated soils.
Dadhwal M, Singh A, Prakash O, Gupta SK, Kumari K, Sharma P, Jit S, Verma M, Holliger C, Lal R., J Appl Microbiol 106(2), 2009
PMID: 19200306
Dadhwal M, Singh A, Prakash O, Gupta SK, Kumari K, Sharma P, Jit S, Verma M, Holliger C, Lal R., J Appl Microbiol 106(2), 2009
PMID: 19200306
Sphingobium chinhatense sp. nov., a hexachlorocyclohexane (HCH)-degrading bacterium isolated from an HCH dumpsite.
Dadhwal M, Jit S, Kumari H, Lal R., Int J Syst Evol Microbiol 59(pt 12), 2009
PMID: 19643888
Dadhwal M, Jit S, Kumari H, Lal R., Int J Syst Evol Microbiol 59(pt 12), 2009
PMID: 19643888
Crystallization and preliminary X-ray analysis of gamma-hexachlorocyclohexane dehydrochlorinase LinA from Sphingobium japonicum UT26.
Okai M, Kubota K, Fukuda M, Nagata Y, Nagata K, Tanokura M., Acta Crystallogr Sect F Struct Biol Cryst Commun 65(pt 8), 2009
PMID: 19652349
Okai M, Kubota K, Fukuda M, Nagata Y, Nagata K, Tanokura M., Acta Crystallogr Sect F Struct Biol Cryst Commun 65(pt 8), 2009
PMID: 19652349
Isolation of hexachlorocyclohexane-degrading Sphingomonas sp. by dehalogenase assay and characterization of genes involved in gamma-HCH degradation.
Manickam N, Reddy MK, Saini HS, Shanker R., J Appl Microbiol 104(4), 2008
PMID: 18042212
Manickam N, Reddy MK, Saini HS, Shanker R., J Appl Microbiol 104(4), 2008
PMID: 18042212
Rhizoremediation of lindane by root-colonizing Sphingomonas.
Böltner D, Godoy P, Muñoz-Rojas J, Duque E, Moreno-Morillas S, Sánchez L, Ramos JL., Microb Biotechnol 1(1), 2008
PMID: 21261825
Böltner D, Godoy P, Muñoz-Rojas J, Duque E, Moreno-Morillas S, Sánchez L, Ramos JL., Microb Biotechnol 1(1), 2008
PMID: 21261825
Pseudomonas sp. to Sphingobium indicum: a journey of microbial degradation and bioremediation of Hexachlorocyclohexane.
Lal R, Dadhwal M, Kumari K, Sharma P, Singh A, Kumari H, Jit S, Gupta SK, Nigam A, Lal D, Verma M, Kaur J, Bala K, Jindal S., Indian J Microbiol 48(1), 2008
PMID: 23100696
Lal R, Dadhwal M, Kumari K, Sharma P, Singh A, Kumari H, Jit S, Gupta SK, Nigam A, Lal D, Verma M, Kaur J, Bala K, Jindal S., Indian J Microbiol 48(1), 2008
PMID: 23100696
Insertion sequence-based cassette PCR: cultivation-independent isolation of gamma-hexachlorocyclohexane-degrading genes from soil DNA.
Fuchu G, Ohtsubo Y, Ito M, Miyazaki R, Ono A, Nagata Y, Tsuda M., Appl Microbiol Biotechnol 79(4), 2008
PMID: 18425509
Fuchu G, Ohtsubo Y, Ito M, Miyazaki R, Ono A, Nagata Y, Tsuda M., Appl Microbiol Biotechnol 79(4), 2008
PMID: 18425509
Molecular cloning and characterization of cytochrome P450 and ferredoxin genes involved in bisphenol A degradation in Sphingomonas bisphenolicum strain AO1.
Sasaki M, Tsuchido T, Matsumura Y., J Appl Microbiol 105(4), 2008
PMID: 18492046
Sasaki M, Tsuchido T, Matsumura Y., J Appl Microbiol 105(4), 2008
PMID: 18492046
Phylogeny vs genome reshuffling: horizontal gene transfer.
Lal S, Cheema S, Kalia VC., Indian J Microbiol 48(2), 2008
PMID: 23100716
Lal S, Cheema S, Kalia VC., Indian J Microbiol 48(2), 2008
PMID: 23100716
Degradation of beta-hexachlorocyclohexane by haloalkane dehalogenase LinB from gamma-hexachlorocyclohexane-utilizing bacterium Sphingobium sp. MI1205.
Ito M, Prokop Z, Klvana M, Otsubo Y, Tsuda M, Damborský J, Nagata Y., Arch Microbiol 188(4), 2007
PMID: 17516046
Ito M, Prokop Z, Klvana M, Otsubo Y, Tsuda M, Damborský J, Nagata Y., Arch Microbiol 188(4), 2007
PMID: 17516046
Selective loss of lin genes from hexachlorocyclohexane-degrading Pseudomonas aeruginosa ITRC-5 under different growth conditions.
Singh AK, Chaudhary P, Macwan AS, Diwedi UN, Kumar A., Appl Microbiol Biotechnol 76(4), 2007
PMID: 17602219
Singh AK, Chaudhary P, Macwan AS, Diwedi UN, Kumar A., Appl Microbiol Biotechnol 76(4), 2007
PMID: 17602219
Aerobic degradation of lindane (gamma-hexachlorocyclohexane) in bacteria and its biochemical and molecular basis.
Nagata Y, Endo R, Ito M, Ohtsubo Y, Tsuda M., Appl Microbiol Biotechnol 76(4), 2007
PMID: 17634937
Nagata Y, Endo R, Ito M, Ohtsubo Y, Tsuda M., Appl Microbiol Biotechnol 76(4), 2007
PMID: 17634937
Analysis of the role of LinA and LinB in biodegradation of delta-hexachlorocyclohexane.
Wu J, Hong Q, Sun Y, Hong Y, Yan Q, Li S., Environ Microbiol 9(9), 2007
PMID: 17686029
Wu J, Hong Q, Sun Y, Hong Y, Yan Q, Li S., Environ Microbiol 9(9), 2007
PMID: 17686029
Localization of HCH catabolic genes (lin genes) in Sphingobium indicum B90A.
Malhotra S, Sharma P, Kumari H, Singh A, Lal R., Indian J Microbiol 47(3), 2007
PMID: 23100677
Malhotra S, Sharma P, Kumari H, Singh A, Lal R., Indian J Microbiol 47(3), 2007
PMID: 23100677
Genetic organization of a plasmid from an industrial wastewater bioreactor.
Bramucci M, Chen M, Nagarajan V., Appl Microbiol Biotechnol 71(1), 2006
PMID: 16244860
Bramucci M, Chen M, Nagarajan V., Appl Microbiol Biotechnol 71(1), 2006
PMID: 16244860
Distribution and phylogeny of hexachlorocyclohexane-degrading bacteria in soils from Spain.
Mohn WW, Mertens B, Neufeld JD, Verstraete W, de Lorenzo V., Environ Microbiol 8(1), 2006
PMID: 16343322
Mohn WW, Mertens B, Neufeld JD, Verstraete W, de Lorenzo V., Environ Microbiol 8(1), 2006
PMID: 16343322
Slow-release inoculation allows sustained biodegradation of gamma-hexachlorocyclohexane.
Mertens B, Boon N, Verstraete W., Appl Environ Microbiol 72(1), 2006
PMID: 16391099
Mertens B, Boon N, Verstraete W., Appl Environ Microbiol 72(1), 2006
PMID: 16391099
Diversity, distribution and divergence of lin genes in hexachlorocyclohexane-degrading sphingomonads.
Lal R, Dogra C, Malhotra S, Sharma P, Pal R., Trends Biotechnol 24(3), 2006
PMID: 16473421
Lal R, Dogra C, Malhotra S, Sharma P, Pal R., Trends Biotechnol 24(3), 2006
PMID: 16473421
Development of metagenomic DNA shuffling for the construction of a xenobiotic gene.
Boubakri H, Beuf M, Simonet P, Vogel TM., Gene 375(), 2006
PMID: 16690231
Boubakri H, Beuf M, Simonet P, Vogel TM., Gene 375(), 2006
PMID: 16690231
Dissemination and persistence of blaCTX-M-9 are linked to class 1 integrons containing CR1 associated with defective transposon derivatives from Tn402 located in early antibiotic resistance plasmids of IncHI2, IncP1-alpha, and IncFI groups.
Novais A, Cantón R, Valverde A, Machado E, Galán JC, Peixe L, Carattoli A, Baquero F, Coque TM., Antimicrob Agents Chemother 50(8), 2006
PMID: 16870767
Novais A, Cantón R, Valverde A, Machado E, Galán JC, Peixe L, Carattoli A, Baquero F, Coque TM., Antimicrob Agents Chemother 50(8), 2006
PMID: 16870767
Haloalkane dehalogenase LinB is responsible for beta- and delta-hexachlorocyclohexane transformation in Sphingobium indicum B90A.
Sharma P, Raina V, Kumari R, Malhotra S, Dogra C, Kumari H, Kohler HP, Buser HR, Holliger C, Lal R., Appl Environ Microbiol 72(9), 2006
PMID: 16957186
Sharma P, Raina V, Kumari R, Malhotra S, Dogra C, Kumari H, Kohler HP, Buser HR, Holliger C, Lal R., Appl Environ Microbiol 72(9), 2006
PMID: 16957186
Complete nucleotide sequence of an exogenously isolated plasmid, pLB1, involved in gamma-hexachlorocyclohexane degradation.
Miyazaki R, Sato Y, Ito M, Ohtsubo Y, Nagata Y, Tsuda M., Appl Environ Microbiol 72(11), 2006
PMID: 16963556
Miyazaki R, Sato Y, Ito M, Ohtsubo Y, Nagata Y, Tsuda M., Appl Environ Microbiol 72(11), 2006
PMID: 16963556
Two unusual chlorocatechol catabolic gene clusters in Sphingomonas sp. TFD44.
Thiel M, Kaschabek SR, Gröning J, Mau M, Schlömann M., Arch Microbiol 183(2), 2005
PMID: 15688254
Thiel M, Kaschabek SR, Gröning J, Mau M, Schlömann M., Arch Microbiol 183(2), 2005
PMID: 15688254
Identification of insertion sequence from a gamma-hexachlorocyclohexane degrading bacterium, Sphingomonas paucimobilis UT26.
Miyauchi K, Fukuda M, Tsuda M, Takagi M, Nagata Y., Biosci Biotechnol Biochem 69(1), 2005
PMID: 15665490
Miyauchi K, Fukuda M, Tsuda M, Takagi M, Nagata Y., Biosci Biotechnol Biochem 69(1), 2005
PMID: 15665490
Accessing microbial diversity for bioremediation and environmental restoration.
Paul D, Pandey G, Pandey J, Jain RK., Trends Biotechnol 23(3), 2005
PMID: 15734556
Paul D, Pandey G, Pandey J, Jain RK., Trends Biotechnol 23(3), 2005
PMID: 15734556
The TetR family of transcriptional repressors.
Ramos JL, Martínez-Bueno M, Molina-Henares AJ, Terán W, Watanabe K, Zhang X, Gallegos MT, Brennan R, Tobes R., Microbiol Mol Biol Rev 69(2), 2005
PMID: 15944459
Ramos JL, Martínez-Bueno M, Molina-Henares AJ, Terán W, Watanabe K, Zhang X, Gallegos MT, Brennan R, Tobes R., Microbiol Mol Biol Rev 69(2), 2005
PMID: 15944459
Biodegradation of hexachlorocyclohexane (HCH) by microorganisms.
Phillips TM, Seech AG, Lee H, Trevors JT., Biodegradation 16(4), 2005
PMID: 15865341
Phillips TM, Seech AG, Lee H, Trevors JT., Biodegradation 16(4), 2005
PMID: 15865341
16S rDNA phylogeny and distribution of lin genes in novel hexachlorocyclohexane-degrading Sphingomonas strains.
Böltner D, Moreno-Morillas S, Ramos JL., Environ Microbiol 7(9), 2005
PMID: 16104856
Böltner D, Moreno-Morillas S, Ramos JL., Environ Microbiol 7(9), 2005
PMID: 16104856
Bacterial degradation of xenobiotic compounds: evolution and distribution of novel enzyme activities.
Janssen DB, Dinkla IJ, Poelarends GJ, Terpstra P., Environ Microbiol 7(12), 2005
PMID: 16309386
Janssen DB, Dinkla IJ, Poelarends GJ, Terpstra P., Environ Microbiol 7(12), 2005
PMID: 16309386
Enantioselective transformation of alpha-hexachlorocyclohexane by the dehydrochlorinases LinA1 and LinA2 from the soil bacterium Sphingomonas paucimobilis B90A.
Suar M, Hauser A, Poiger T, Buser HR, Müller MD, Dogra C, Raina V, Holliger C, van der Meer JR, Lal R, Kohler HP., Appl Environ Microbiol 71(12), 2005
PMID: 16332842
Suar M, Hauser A, Poiger T, Buser HR, Müller MD, Dogra C, Raina V, Holliger C, van der Meer JR, Lal R, Kohler HP., Appl Environ Microbiol 71(12), 2005
PMID: 16332842
Dynamics of multiple lin gene expression in Sphingomonas paucimobilis B90A in response to different hexachlorocyclohexane isomers.
Suar M, van der Meer JR, Lawlor K, Holliger C, Lal R., Appl Environ Microbiol 70(11), 2004
PMID: 15528530
Suar M, van der Meer JR, Lawlor K, Holliger C, Lal R., Appl Environ Microbiol 70(11), 2004
PMID: 15528530
38 References
Daten bereitgestellt von Europe PubMed Central.
AUTHOR UNKNOWN, 1993
AUTHOR UNKNOWN, 2003
Basic local alignment search tool.
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ., J. Mol. Biol. 215(3), 1990
PMID: 2231712
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ., J. Mol. Biol. 215(3), 1990
PMID: 2231712
AUTHOR UNKNOWN, 1993
Partial characterization of a genomic island associated with the multidrug resistance region of Salmonella enterica Typhymurium DT104.
Boyd DA, Peters GA, Ng L, Mulvey MR., FEMS Microbiol. Lett. 189(2), 2000
PMID: 10930753
Boyd DA, Peters GA, Ng L, Mulvey MR., FEMS Microbiol. Lett. 189(2), 2000
PMID: 10930753
AUTHOR UNKNOWN, 2000
Integrons found in different locations have identical 5' ends but variable 3' ends.
Hall RM, Brown HJ, Brookes DE, Stokes HW., J. Bacteriol. 176(20), 1994
PMID: 7929000
Hall RM, Brown HJ, Brookes DE, Stokes HW., J. Bacteriol. 176(20), 1994
PMID: 7929000
Using CLUSTAL for multiple sequence alignments.
Higgins DG, Thompson JD, Gibson TJ., Meth. Enzymol. 266(), 1996
PMID: 8743695
Higgins DG, Thompson JD, Gibson TJ., Meth. Enzymol. 266(), 1996
PMID: 8743695
Molecular cloning of a Pseudomonas paucimobilis gene encoding a 17-kilodalton polypeptide that eliminates HCl molecules from gamma-hexachlorocyclohexane.
Imai R, Nagata Y, Fukuda M, Takagi M, Yano K., J. Bacteriol. 173(21), 1991
PMID: 1718942
Imai R, Nagata Y, Fukuda M, Takagi M, Yano K., J. Bacteriol. 173(21), 1991
PMID: 1718942
Genetic manipulations of microorganisms for the degradation of hexachlorocyclohexane.
Johri AK, Dua M, Tuteja D, Saxena R, Saxena DM, Lal R., FEMS Microbiol. Rev. 19(2), 1996
PMID: 8988565
Johri AK, Dua M, Tuteja D, Saxena R, Saxena DM, Lal R., FEMS Microbiol. Rev. 19(2), 1996
PMID: 8988565
Organochlorine pesticides and polychlorinated biphenyls in foodstuffs from Asian and oceanic countries.
Kannan K, Tanabe S, Giesy JP, Tatsukawa R., Rev Environ Contam Toxicol 152(), 1997
PMID: 9297984
Kannan K, Tanabe S, Giesy JP, Tatsukawa R., Rev Environ Contam Toxicol 152(), 1997
PMID: 9297984
Insertion sequence IS6100 on plasmid pOAD2, which degrades nylon oligomers.
Kato K, Ohtsuki K, Mitsuda H, Yomo T, Negoro S, Urabe I., J. Bacteriol. 176(4), 1994
PMID: 8106333
Kato K, Ohtsuki K, Mitsuda H, Yomo T, Negoro S, Urabe I., J. Bacteriol. 176(4), 1994
PMID: 8106333
AUTHOR UNKNOWN, 2002
Cloning and characterization of lin genes responsible for the degradation of Hexachlorocyclohexane isomers by Sphingomonas paucimobilis strain B90.
Kumari R, Subudhi S, Suar M, Dhingra G, Raina V, Dogra C, Lal S, van der Meer JR, Holliger C, Lal R., Appl. Environ. Microbiol. 68(12), 2002
PMID: 12450824
Kumari R, Subudhi S, Suar M, Dhingra G, Raina V, Dogra C, Lal S, van der Meer JR, Holliger C, Lal R., Appl. Environ. Microbiol. 68(12), 2002
PMID: 12450824
Accumulation, metabolism, and effects of organochlorine insecticides on microorganisms.
Lal R, Saxena DM., Microbiol. Rev. 46(1), 1982
PMID: 6178010
Lal R, Saxena DM., Microbiol. Rev. 46(1), 1982
PMID: 6178010
Transposition of an antibiotic resistance element in mycobacteria.
Martin C, Timm J, Rauzier J, Gomez-Lus R, Davies J, Gicquel B., Nature 345(6277), 1990
PMID: 2163027
Martin C, Timm J, Rauzier J, Gomez-Lus R, Davies J, Gicquel B., Nature 345(6277), 1990
PMID: 2163027
Cloning and characterization of linR, involved in regulation of the downstream pathway for gamma-hexachlorocyclohexane degradation in Sphingomonas paucimobilis UT26.
Miyauchi K, Lee HS, Fukuda M, Takagi M, Nagata Y., Appl. Environ. Microbiol. 68(4), 2002
PMID: 11916699
Miyauchi K, Lee HS, Fukuda M, Takagi M, Nagata Y., Appl. Environ. Microbiol. 68(4), 2002
PMID: 11916699
Cloning and sequencing of a 2,5-dichlorohydroquinone reductive dehalogenase gene whose product is involved in degradation of gamma-hexachlorocyclohexane by Sphingomonas paucimobilis.
Miyauchi K, Suh SK, Nagata Y, Takagi M., J. Bacteriol. 180(6), 1998
PMID: 9515900
Miyauchi K, Suh SK, Nagata Y, Takagi M., J. Bacteriol. 180(6), 1998
PMID: 9515900
Cloning and sequencing of a novel meta-cleavage dioxygenase gene whose product is involved in degradation of gamma-hexachlorocyclohexane in Sphingomonas paucimobilis.
Miyauchi K, Adachi Y, Nagata Y, Takagi M., J. Bacteriol. 181(21), 1999
PMID: 10542173
Miyauchi K, Adachi Y, Nagata Y, Takagi M., J. Bacteriol. 181(21), 1999
PMID: 10542173
Complete analysis of genes and enzymes for gamma-hexachlorocyclohexane degradation in Sphingomonas paucimobilis UT26.
Nagata Y, Miyauchi K, Takagi M., J. Ind. Microbiol. Biotechnol. 23(4-5), 1999
PMID: 11423959
Nagata Y, Miyauchi K, Takagi M., J. Ind. Microbiol. Biotechnol. 23(4-5), 1999
PMID: 11423959
AUTHOR UNKNOWN, 1996
Cloning and sequencing of a 2,5-dichloro-2,5-cyclohexadiene-1,4-diol dehydrogenase gene involved in the degradation of gamma-hexachlorocyclohexane in Pseudomonas paucimobilis.
Nagata Y, Ohtomo R, Miyauchi K, Fukuda M, Yano K, Takagi M., J. Bacteriol. 176(11), 1994
PMID: 7515041
Nagata Y, Ohtomo R, Miyauchi K, Fukuda M, Yano K, Takagi M., J. Bacteriol. 176(11), 1994
PMID: 7515041
Cloning and sequencing of a dehalogenase gene encoding an enzyme with hydrolase activity involved in the degradation of gamma-hexachlorocyclohexane in Pseudomonas paucimobilis.
Nagata Y, Nariya T, Ohtomo R, Fukuda M, Yano K, Takagi M., J. Bacteriol. 175(20), 1993
PMID: 7691794
Nagata Y, Nariya T, Ohtomo R, Fukuda M, Yano K, Takagi M., J. Bacteriol. 175(20), 1993
PMID: 7691794
Rhodanobacter lindaniclasticus gen. nov., sp. nov., a lindane-degrading bacterium.
Nalin R, Simonet P, Vogel TM, Normand P., Int. J. Syst. Bacteriol. 49 Pt 1(), 1999
PMID: 10028243
Nalin R, Simonet P, Vogel TM, Normand P., Int. J. Syst. Bacteriol. 49 Pt 1(), 1999
PMID: 10028243
AUTHOR UNKNOWN, 2000
AUTHOR UNKNOWN, 2002
The cassettes and 3' conserved segment of an integron from Klebsiella oxytoca plasmid pACM1.
Preston KE, Radomski CC, Venezia RA., Plasmid 42(2), 1999
PMID: 10489327
Preston KE, Radomski CC, Venezia RA., Plasmid 42(2), 1999
PMID: 10489327
Complete sequence of a 184-kilobase catabolic plasmid from Sphingomonas aromaticivorans F199.
Romine MF, Stillwell LC, Wong KK, Thurston SJ, Sisk EC, Sensen C, Gaasterland T, Fredrickson JK, Saffer JD., J. Bacteriol. 181(5), 1999
PMID: 10049392
Romine MF, Stillwell LC, Wong KK, Thurston SJ, Sisk EC, Sensen C, Gaasterland T, Fredrickson JK, Saffer JD., J. Bacteriol. 181(5), 1999
PMID: 10049392
Degradation of Alpha-, Beta-, and Gamma-Hexachlorocyclohexane by a Soil Bacterium under Aerobic Conditions.
Sahu SK, Patnaik KK, Sharmila M, Sethunathan N., Appl. Environ. Microbiol. 56(11), 1990
PMID: 16348365
Sahu SK, Patnaik KK, Sharmila M, Sethunathan N., Appl. Environ. Microbiol. 56(11), 1990
PMID: 16348365
AUTHOR UNKNOWN, 1989
Monitoring of pesticide residues in summer fruits and vegetables from Kanpur, India.
Sanghi R, Tewari V., Bull Environ Contam Toxicol 67(4), 2001
PMID: 11779076
Sanghi R, Tewari V., Bull Environ Contam Toxicol 67(4), 2001
PMID: 11779076
AUTHOR UNKNOWN, 1989
Global distribution of persistent organochlorine compounds.
Simonich SL, Hites RA., Science 269(5232), 1995
PMID: 7569923
Simonich SL, Hites RA., Science 269(5232), 1995
PMID: 7569923
Integron-containing IncU R plasmids pRAS1 and pAr-32 from the fish pathogen Aeromonas salmonicida.
Sorum H, L'Abee-Lund TM, Solberg A, Wold A., Antimicrob. Agents Chemother. 47(4), 2003
PMID: 12654659
Sorum H, L'Abee-Lund TM, Solberg A, Wold A., Antimicrob. Agents Chemother. 47(4), 2003
PMID: 12654659
Expression of the strA-strB streptomycin resistance genes in Pseudomonas syringae and Xanthomonas campestris and characterization of IS6100 in X. campestris.
Sundin GW, Bender CL., Appl. Environ. Microbiol. 61(8), 1995
PMID: 7487022
Sundin GW, Bender CL., Appl. Environ. Microbiol. 61(8), 1995
PMID: 7487022
The 27.8-kb R-plasmid pTET3 from Corynebacterium glutamicum encodes the aminoglycoside adenyltransferase gene cassette aadA9 and the regulated tetracycline efflux system Tet 33 flanked by active copies of the widespread insertion sequence IS6100.
Tauch A, Gotker S, Puhler A, Kalinowski J, Thierbach G., Plasmid 48(2), 2002
PMID: 12383729
Tauch A, Gotker S, Puhler A, Kalinowski J, Thierbach G., Plasmid 48(2), 2002
PMID: 12383729
Isolation and characterization of a novel gamma-hexachlorocyclohexane-degrading bacterium.
Thomas JC, Berger F, Jacquier M, Bernillon D, Baud-Grasset F, Truffaut N, Normand P, Vogel TM, Simonet P., J. Bacteriol. 178(20), 1996
PMID: 8830705
Thomas JC, Berger F, Jacquier M, Bernillon D, Baud-Grasset F, Truffaut N, Normand P, Vogel TM, Simonet P., J. Bacteriol. 178(20), 1996
PMID: 8830705
AUTHOR UNKNOWN, 1989
Export
Markieren/ Markierung löschen
Markierte Publikationen
Web of Science
Dieser Datensatz im Web of Science®Quellen
PMID: 15060023
PubMed | Europe PMC
Suchen in