Probing DNA-peptide interaction forces at the single-molecule level
Sewald N, Wilking SD, Eckel R, Albu S, Wollschläger K, Gaus K, Becker A, Bartels FW, Ros R, Anselmetti D (2006)
Journal of Peptide Science 12(12): 836-842.
Zeitschriftenaufsatz
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Autor*in
Sewald, NorbertUniBi ;
Wilking, Sven D.;
Eckel, Rainer;
Albu, Silvia;
Wollschläger, Katrin;
Gaus, Katharina;
Becker, Anke;
Bartels, Frank W.;
Ros, Robert;
Anselmetti, DarioUniBi
Einrichtung
Abstract / Bemerkung
The versatility of chemical peptide synthesis combined with the high sensitivity of AFM single-molecule force spectroscopy allows us to investigate, quantify, and control molecular recognition processes (molecular nanotechnology), offering a tremendous potential in chemical biology. Single-molecule force spectroscopy experiments are able to detect fast intermediate transition states, details of the energy landscape, and structural changes, while avoiding multiple binding events that can occur under ensemble conditions. Dynamic force spectroscopy (DFS) is even able to provide data on the complex lifetime. This minireview outlines the biophysical methodology, discusses different experimental set-ups, and presents representative results in the form of two case studies, both dealing with DNA-binding peptides. They may serve as model systems, e.g., for transcription factors or gene transfection agents. Copyright (c) 2006 European Peptide Society and John Wiley & Sons, Ltd.
Stichworte
DNA;
peptide;
transcription factor;
molecular recognition;
single-molecule force spectroscopy;
optical;
tweezers;
atomic force microscopy
Erscheinungsjahr
2006
Zeitschriftentitel
Journal of Peptide Science
Band
12
Ausgabe
12
Seite(n)
836-842
ISSN
1075-2617
eISSN
1099-1387
Page URI
https://pub.uni-bielefeld.de/record/1596471
Zitieren
Sewald N, Wilking SD, Eckel R, et al. Probing DNA-peptide interaction forces at the single-molecule level. Journal of Peptide Science. 2006;12(12):836-842.
Sewald, N., Wilking, S. D., Eckel, R., Albu, S., Wollschläger, K., Gaus, K., Becker, A., et al. (2006). Probing DNA-peptide interaction forces at the single-molecule level. Journal of Peptide Science, 12(12), 836-842. https://doi.org/10.1002/psc.820
Sewald, Norbert, Wilking, Sven D., Eckel, Rainer, Albu, Silvia, Wollschläger, Katrin, Gaus, Katharina, Becker, Anke, Bartels, Frank W., Ros, Robert, and Anselmetti, Dario. 2006. “Probing DNA-peptide interaction forces at the single-molecule level”. Journal of Peptide Science 12 (12): 836-842.
Sewald, N., Wilking, S. D., Eckel, R., Albu, S., Wollschläger, K., Gaus, K., Becker, A., Bartels, F. W., Ros, R., and Anselmetti, D. (2006). Probing DNA-peptide interaction forces at the single-molecule level. Journal of Peptide Science 12, 836-842.
Sewald, N., et al., 2006. Probing DNA-peptide interaction forces at the single-molecule level. Journal of Peptide Science, 12(12), p 836-842.
N. Sewald, et al., “Probing DNA-peptide interaction forces at the single-molecule level”, Journal of Peptide Science, vol. 12, 2006, pp. 836-842.
Sewald, N., Wilking, S.D., Eckel, R., Albu, S., Wollschläger, K., Gaus, K., Becker, A., Bartels, F.W., Ros, R., Anselmetti, D.: Probing DNA-peptide interaction forces at the single-molecule level. Journal of Peptide Science. 12, 836-842 (2006).
Sewald, Norbert, Wilking, Sven D., Eckel, Rainer, Albu, Silvia, Wollschläger, Katrin, Gaus, Katharina, Becker, Anke, Bartels, Frank W., Ros, Robert, and Anselmetti, Dario. “Probing DNA-peptide interaction forces at the single-molecule level”. Journal of Peptide Science 12.12 (2006): 836-842.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
10 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
Microstructure arrays of DNA using topographic control.
Cha YJ, Park SM, You R, Kim H, Yoon DK., Nat Commun 10(1), 2019
PMID: 31175307
Cha YJ, Park SM, You R, Kim H, Yoon DK., Nat Commun 10(1), 2019
PMID: 31175307
Control of Periodic Zigzag Structures of DNA by a Simple Shearing Method.
Cha YJ, Yoon DK., Adv Mater 29(3), 2017
PMID: 27862385
Cha YJ, Yoon DK., Adv Mater 29(3), 2017
PMID: 27862385
Quantitative Evaluation of Viral Protein Binding to Phosphoinositide Receptors and Pharmacological Inhibition.
Kim SO, Jackman JA, Elazar M, Cho SJ, Glenn JS, Cho NJ., Anal Chem 89(18), 2017
PMID: 28809547
Kim SO, Jackman JA, Elazar M, Cho SJ, Glenn JS, Cho NJ., Anal Chem 89(18), 2017
PMID: 28809547
Surfactant-free nanoparticle-DNA complexes with ultrahigh stability against salt for environmental and biological sensing.
Heo JH, Cho HH, Lee JH., Analyst 139(22), 2014
PMID: 25254648
Heo JH, Cho HH, Lee JH., Analyst 139(22), 2014
PMID: 25254648
Analysis of DNA interactions using single-molecule force spectroscopy.
Ritzefeld M, Walhorn V, Anselmetti D, Sewald N., Amino Acids 44(6), 2013
PMID: 23468137
Ritzefeld M, Walhorn V, Anselmetti D, Sewald N., Amino Acids 44(6), 2013
PMID: 23468137
Direct force measurement of single DNA-peptide interactions using atomic force microscopy.
Chung JW, Shin D, Kwak JM, Seog J., J Mol Recognit 26(6), 2013
PMID: 23595808
Chung JW, Shin D, Kwak JM, Seog J., J Mol Recognit 26(6), 2013
PMID: 23595808
Nanoimaging for protein misfolding diseases.
Lyubchenko YL, Kim BH, Krasnoslobodtsev AV, Yu J., Wiley Interdiscip Rev Nanomed Nanobiotechnol 2(5), 2010
PMID: 20665728
Lyubchenko YL, Kim BH, Krasnoslobodtsev AV, Yu J., Wiley Interdiscip Rev Nanomed Nanobiotechnol 2(5), 2010
PMID: 20665728
Single-molecule experiments to elucidate the minimal requirement for DNA recognition by transcription factor epitopes.
Wollschläger K, Gaus K, Körnig A, Eckel R, Wilking SD, McIntosh M, Majer Z, Becker A, Ros R, Anselmetti D, Sewald N., Small 5(4), 2009
PMID: 19199332
Wollschläger K, Gaus K, Körnig A, Eckel R, Wilking SD, McIntosh M, Majer Z, Becker A, Ros R, Anselmetti D, Sewald N., Small 5(4), 2009
PMID: 19199332
Scanning probe microscopy in the field of drug delivery.
Turner YT, Roberts CJ, Davies MC., Adv Drug Deliv Rev 59(14), 2007
PMID: 17920719
Turner YT, Roberts CJ, Davies MC., Adv Drug Deliv Rev 59(14), 2007
PMID: 17920719
Past, present and future of atomic force microscopy in life sciences and medicine.
Parot P, Dufrêne YF, Hinterdorfer P, Le Grimellec C, Navajas D, Pellequer JL, Scheuring S., J Mol Recognit 20(6), 2007
PMID: 18080995
Parot P, Dufrêne YF, Hinterdorfer P, Le Grimellec C, Navajas D, Pellequer JL, Scheuring S., J Mol Recognit 20(6), 2007
PMID: 18080995
39 References
Daten bereitgestellt von Europe PubMed Central.
Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid.
WATSON JD, CRICK FH., Nature 171(4356), 1953
PMID: 13054692
WATSON JD, CRICK FH., Nature 171(4356), 1953
PMID: 13054692
Gordon, Phys. Rev., A 8(), 1973
Optical trapping and manipulation of neutral particles using lasers.
Ashkin A., Proc. Natl. Acad. Sci. U.S.A. 94(10), 1997
PMID: 9144154
Ashkin A., Proc. Natl. Acad. Sci. U.S.A. 94(10), 1997
PMID: 9144154
Meyer, Appl. Phys. Lett. 53(), 1988
Grabbing the cat by the tail: manipulating molecules one by one.
Bustamante C, Macosko JC, Wuite GJ., Nat. Rev. Mol. Cell Biol. 1(2), 2000
PMID: 11253365
Bustamante C, Macosko JC, Wuite GJ., Nat. Rev. Mol. Cell Biol. 1(2), 2000
PMID: 11253365
Direct mechanical measurements of the elasticity of single DNA molecules by using magnetic beads.
Smith SB, Finzi L, Bustamante C., Science 258(5085), 1992
PMID: 1439819
Smith SB, Finzi L, Bustamante C., Science 258(5085), 1992
PMID: 1439819
Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules.
Smith SB, Cui Y, Bustamante C., Science 271(5250), 1996
PMID: 8628994
Smith SB, Cui Y, Bustamante C., Science 271(5250), 1996
PMID: 8628994
Sequence-dependent mechanics of single DNA molecules.
Rief M, Clausen-Schaumann H, Gaub HE., Nat. Struct. Biol. 6(4), 1999
PMID: 10201403
Rief M, Clausen-Schaumann H, Gaub HE., Nat. Struct. Biol. 6(4), 1999
PMID: 10201403
DNA: an extensible molecule.
Cluzel P, Lebrun A, Heller C, Lavery R, Viovy JL, Chatenay D, Caron F., Science 271(5250), 1996
PMID: 8628993
Cluzel P, Lebrun A, Heller C, Lavery R, Viovy JL, Chatenay D, Caron F., Science 271(5250), 1996
PMID: 8628993
Intermolecular forces and energies between ligands and receptors.
Moy VT, Florin EL, Gaub HE., Science 266(5183), 1994
PMID: 7939660
Moy VT, Florin EL, Gaub HE., Science 266(5183), 1994
PMID: 7939660
Detection and localization of individual antibody-antigen recognition events by atomic force microscopy.
Hinterdorfer P, Baumgartner W, Gruber HJ, Schilcher K, Schindler H., Proc. Natl. Acad. Sci. U.S.A. 93(8), 1996
PMID: 8622961
Hinterdorfer P, Baumgartner W, Gruber HJ, Schilcher K, Schindler H., Proc. Natl. Acad. Sci. U.S.A. 93(8), 1996
PMID: 8622961
Specific antigen/antibody interactions measured by force microscopy.
Dammer U, Hegner M, Anselmetti D, Wagner P, Dreier M, Huber W, Guntherodt HJ., Biophys. J. 70(5), 1996
PMID: 9172770
Dammer U, Hegner M, Anselmetti D, Wagner P, Dreier M, Huber W, Guntherodt HJ., Biophys. J. 70(5), 1996
PMID: 9172770
Antigen binding forces of individually addressed single-chain Fv antibody molecules.
Ros R, Schwesinger F, Anselmetti D, Kubon M, Schafer R, Pluckthun A, Tiefenauer L., Proc. Natl. Acad. Sci. U.S.A. 95(13), 1998
PMID: 9636161
Ros R, Schwesinger F, Anselmetti D, Kubon M, Schafer R, Pluckthun A, Tiefenauer L., Proc. Natl. Acad. Sci. U.S.A. 95(13), 1998
PMID: 9636161
Eckel, Angew. Chem. 117(), 2005
Eckel, Angew. Chem., Int. Ed. Engl. 44(), 2005
Direct measurement of the forces between complementary strands of DNA.
Lee GU, Chrisey LA, Colton RJ., Science 266(5186), 1994
PMID: 7973628
Lee GU, Chrisey LA, Colton RJ., Science 266(5186), 1994
PMID: 7973628
Anselmetti, Single Mol. 1(), 2000
Krautbauer, Angew. Chem., Int. Ed. Engl. 39(), 2000
Identification of binding mechanisms in single molecule-DNA complexes.
Eckel R, Ros R, Ros A, Wilking SD, Sewald N, Anselmetti D., Biophys. J. 85(3), 2003
PMID: 12944309
Eckel R, Ros R, Ros A, Wilking SD, Sewald N, Anselmetti D., Biophys. J. 85(3), 2003
PMID: 12944309
Discriminating small molecule DNA binding modes by single molecule force spectroscopy.
Krautbauer R, Pope LH, Schrader TE, Allen S, Gaub HE., FEBS Lett. 510(3), 2002
PMID: 11801245
Krautbauer R, Pope LH, Schrader TE, Allen S, Gaub HE., FEBS Lett. 510(3), 2002
PMID: 11801245
Probing protein-DNA interactions by unzipping a single DNA double helix.
Koch SJ, Shundrovsky A, Jantzen BC, Wang MD., Biophys. J. 83(2), 2002
PMID: 12124289
Koch SJ, Shundrovsky A, Jantzen BC, Wang MD., Biophys. J. 83(2), 2002
PMID: 12124289
Specific binding of the regulatory protein ExpG to promoter regions of the galactoglucan biosynthesis gene cluster of Sinorhizobium meliloti--a combined molecular biology and force spectroscopy investigation.
Bartels FW, Baumgarth B, Anselmetti D, Ros R, Becker A., J. Struct. Biol. 143(2), 2003
PMID: 12972351
Bartels FW, Baumgarth B, Anselmetti D, Ros R, Becker A., J. Struct. Biol. 143(2), 2003
PMID: 12972351
Probing the relation between force--lifetime--and chemistry in single molecular bonds.
Evans E., Annu Rev Biophys Biomol Struct 30(), 2001
PMID: 11340054
Evans E., Annu Rev Biophys Biomol Struct 30(), 2001
PMID: 11340054
Dynamic strength of molecular adhesion bonds.
Evans E, Ritchie K., Biophys. J. 72(4), 1997
PMID: 9083660
Evans E, Ritchie K., Biophys. J. 72(4), 1997
PMID: 9083660
Evstigneev, Phys. Rev., E 68(), 2003
Niidome, J. Biol. Chem. 272(), 1996
Relationship between antimicrobial activity and amphiphilic property of basic model peptides.
Lee S, Mihara H, Aoyagi H, Kato T, Izumiya N, Yamasaki N., Biochim. Biophys. Acta 862(1), 1986
PMID: 3768364
Lee S, Mihara H, Aoyagi H, Kato T, Izumiya N, Yamasaki N., Biochim. Biophys. Acta 862(1), 1986
PMID: 3768364
Solid phase synthesis of an amphiphilic peptide modified for immobilisation at the C-terminus.
Wilking SD, Sewald N., J. Biotechnol. 112(1-2), 2004
PMID: 15288946
Wilking SD, Sewald N., J. Biotechnol. 112(1-2), 2004
PMID: 15288946
Backes, J. Org. Chem. 64(), 1999
Barlos, Tetrahedron Lett. 30(), 1989
Mechanical stability of single DNA molecules.
Clausen-Schaumann H, Rief M, Tolksdorf C, Gaub HE., Biophys. J. 78(4), 2000
PMID: 10733978
Clausen-Schaumann H, Rief M, Tolksdorf C, Gaub HE., Biophys. J. 78(4), 2000
PMID: 10733978
Eckel, Angew. Chem., Int. Ed. Engl. 44(), 2005
Molecular mechanisms and kinetics between DNA and DNA binding ligands.
Sischka A, Toensing K, Eckel R, Wilking SD, Sewald N, Ros R, Anselmetti D., Biophys. J. 88(1), 2004
PMID: 15516529
Sischka A, Toensing K, Eckel R, Wilking SD, Sewald N, Ros R, Anselmetti D., Biophys. J. 88(1), 2004
PMID: 15516529
Schumann, J. Am. Chem. Soc. 122(), 2000
Bächle, Angew. Chem., Int. Ed. Engl. 45(), 2006
DNA binding of PhoB and its interaction with RNA polymerase.
Makino K, Amemura M, Kawamoto T, Kimura S, Shinagawa H, Nakata A, Suzuki M., J. Mol. Biol. 259(1), 1996
PMID: 8648643
Makino K, Amemura M, Kawamoto T, Kimura S, Shinagawa H, Nakata A, Suzuki M., J. Mol. Biol. 259(1), 1996
PMID: 8648643
Okamura, J. Mol. Biol. 295(), 2001
Tandem DNA recognition by PhoB, a two-component signal transduction transcriptional activator.
Blanco AG, Sola M, Gomis-Ruth FX, Coll M., Structure 10(5), 2002
PMID: 12015152
Blanco AG, Sola M, Gomis-Ruth FX, Coll M., Structure 10(5), 2002
PMID: 12015152
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