Flexibility and variability of TIMP binding: X-ray structure of the complex between collagenase-3/MMP-13 and TIMP-2
Maskos K, Lang R, Tschesche H, Bode W (2007)
JOURNAL OF MOLECULAR BIOLOGY 366(4): 1222-1231.
Zeitschriftenaufsatz
| Veröffentlicht | Englisch
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
Maskos, K.;
Lang, R.;
Tschesche, HaraldUniBi;
Bode, W.
Einrichtung
Abstract / Bemerkung
The excessive activity of matrix metalloproteinases (MMPs) contributes to pathological processes such as arthritis, tumor growth and metastasis if not balanced by the tissue inhibitors of metalloproteinases (TIMPs). In arthritis, the destruction of fibrillar (type 11) collagen is one of the hallmarks, with MMP-1 (collagenase-1) and NIW-13 (collagenase-3) being identified as key players in arthritic cartilage. MMP-13, furthermore, has been found in highly metastatic tumors. We have solved the 2.0 angstrom crystal structure of the complex between the catalytic domain of human MMP-13 (cdMMP-13) and bovine TIMP-2. The overall structure resembles our previously determined MT1-MMP/TIMP-2 complex, in that the wedge-shaped TIMP-2 inserts with its edge into the entire MMP-13 active site cleft. However, the inhibitor is, according to a relative rotation of similar to 20 degrees, oriented differently relative to the proteinase. Upon TIMP binding, the catalytic zinc, the zinc-ligating side chains, the enclosing MMP loop and the S1' wall-forming segment move significantly and in concert relative to the rest of the cognate MMP, and the active site cleft constricts slightly, probably allowing a more favourable interaction between the Cys1(TIMP) alpha-amino group of the inhibitor and the catalytic zinc ion of the enzyme. Thus, this structure supports the view that the central N-terminal TIMP segment essentially defines the relative positioning of the TIMP, while the flanking edge loops determine the relative orientation, depending on the individual target MMP. (c) 2006 Elsevier Ltd. All rights reserved.
Stichworte
matrix metalloproteinase/MMP;
tissue inhibitor of;
metalloproteinases/TIMP;
complex;
collagenase;
flexibility
Erscheinungsjahr
2007
Zeitschriftentitel
JOURNAL OF MOLECULAR BIOLOGY
Band
366
Ausgabe
4
Seite(n)
1222-1231
ISSN
0022-2836
Page URI
https://pub.uni-bielefeld.de/record/1595220
Zitieren
Maskos K, Lang R, Tschesche H, Bode W. Flexibility and variability of TIMP binding: X-ray structure of the complex between collagenase-3/MMP-13 and TIMP-2. JOURNAL OF MOLECULAR BIOLOGY. 2007;366(4):1222-1231.
Maskos, K., Lang, R., Tschesche, H., & Bode, W. (2007). Flexibility and variability of TIMP binding: X-ray structure of the complex between collagenase-3/MMP-13 and TIMP-2. JOURNAL OF MOLECULAR BIOLOGY, 366(4), 1222-1231. https://doi.org/10.1016/j.jmb.2006.11.072
Maskos, K., Lang, R., Tschesche, Harald, and Bode, W. 2007. “Flexibility and variability of TIMP binding: X-ray structure of the complex between collagenase-3/MMP-13 and TIMP-2”. JOURNAL OF MOLECULAR BIOLOGY 366 (4): 1222-1231.
Maskos, K., Lang, R., Tschesche, H., and Bode, W. (2007). Flexibility and variability of TIMP binding: X-ray structure of the complex between collagenase-3/MMP-13 and TIMP-2. JOURNAL OF MOLECULAR BIOLOGY 366, 1222-1231.
Maskos, K., et al., 2007. Flexibility and variability of TIMP binding: X-ray structure of the complex between collagenase-3/MMP-13 and TIMP-2. JOURNAL OF MOLECULAR BIOLOGY, 366(4), p 1222-1231.
K. Maskos, et al., “Flexibility and variability of TIMP binding: X-ray structure of the complex between collagenase-3/MMP-13 and TIMP-2”, JOURNAL OF MOLECULAR BIOLOGY, vol. 366, 2007, pp. 1222-1231.
Maskos, K., Lang, R., Tschesche, H., Bode, W.: Flexibility and variability of TIMP binding: X-ray structure of the complex between collagenase-3/MMP-13 and TIMP-2. JOURNAL OF MOLECULAR BIOLOGY. 366, 1222-1231 (2007).
Maskos, K., Lang, R., Tschesche, Harald, and Bode, W. “Flexibility and variability of TIMP binding: X-ray structure of the complex between collagenase-3/MMP-13 and TIMP-2”. JOURNAL OF MOLECULAR BIOLOGY 366.4 (2007): 1222-1231.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
UNIPROT
9 Einträge gefunden, die diesen Artikel zitieren
Collagenase-3 splice variant COL3-9B-2 (UNIPROT: Q7Z5M1)
Organism: Homo sapiens
Download in FASTA format
Organism: Homo sapiens
Download in FASTA format
Matrix metalloproteinase 13 preproprotein variant (UNIPROT: Q53H33)
Organism: Homo sapiens
Download in FASTA format
Organism: Homo sapiens
Download in FASTA format
PDB
1 Eintrag gefunden, die diesen Artikel zitieren
x-ray diffraction (PDB: 2e2d)
Protein structure name: flexibility and variability of timp binding: x-ray structure of the complex between collagenase-3/mmp-13 and timp-2
Public wwPDB file in PDB format
Protein structure name: flexibility and variability of timp binding: x-ray structure of the complex between collagenase-3/mmp-13 and timp-2
Public wwPDB file in PDB format
INTERPRO
8 Einträge gefunden, die diesen Artikel zitieren
TIMP-like_OB-fold (INTERPRO: IPR008993)
Protein family/domain name: Tissue inhibitor of metalloproteinases-like, OB-fold
Protein family/domain name: Tissue inhibitor of metalloproteinases-like, OB-fold
Pept_M10_metallopeptidase (INTERPRO: IPR001818)
Protein family/domain name: Peptidase M10, metallopeptidase
Protein family/domain name: Peptidase M10, metallopeptidase
Pept_M10A_stromelysin-type (INTERPRO: IPR016293)
Protein family/domain name: Peptidase M10A, stromelysin-type
Protein family/domain name: Peptidase M10A, stromelysin-type
33 Zitationen in Europe PMC
Daten bereitgestellt von Europe PubMed Central.
Rare Variants in Tissue Inhibitor of Metalloproteinase 2 as a Risk Factor for Schizophrenia: Evidence From Familial and Cohort Analysis.
John J, Sharma A, Kukshal P, Bhatia T, Nimgaonkar VL, Deshpande SN, Thelma BK., Schizophr Bull 45(1), 2019
PMID: 29385606
John J, Sharma A, Kukshal P, Bhatia T, Nimgaonkar VL, Deshpande SN, Thelma BK., Schizophr Bull 45(1), 2019
PMID: 29385606
Converting a broad matrix metalloproteinase family inhibitor into a specific inhibitor of MMP-9 and MMP-14.
Shirian J, Arkadash V, Cohen I, Sapir T, Radisky ES, Papo N, Shifman JM., FEBS Lett 592(7), 2018
PMID: 29473954
Shirian J, Arkadash V, Cohen I, Sapir T, Radisky ES, Papo N, Shifman JM., FEBS Lett 592(7), 2018
PMID: 29473954
Combinatorial engineering of N-TIMP2 variants that selectively inhibit MMP9 and MMP14 function in the cell.
Arkadash V, Radisky ES, Papo N., Oncotarget 9(62), 2018
PMID: 30174795
Arkadash V, Radisky ES, Papo N., Oncotarget 9(62), 2018
PMID: 30174795
Development of High Affinity and High Specificity Inhibitors of Matrix Metalloproteinase 14 through Computational Design and Directed Evolution.
Arkadash V, Yosef G, Shirian J, Cohen I, Horev Y, Grossman M, Sagi I, Radisky ES, Shifman JM, Papo N., J Biol Chem 292(8), 2017
PMID: 28087697
Arkadash V, Yosef G, Shirian J, Cohen I, Horev Y, Grossman M, Sagi I, Radisky ES, Shifman JM, Papo N., J Biol Chem 292(8), 2017
PMID: 28087697
Therapeutic Potential of Matrix Metalloproteinase Inhibition in Breast Cancer.
Radisky ES, Raeeszadeh-Sarmazdeh M, Radisky DC., J Cell Biochem 118(11), 2017
PMID: 28585723
Radisky ES, Raeeszadeh-Sarmazdeh M, Radisky DC., J Cell Biochem 118(11), 2017
PMID: 28585723
Metalloproteinases as mediators of inflammation and the eyes: molecular genetic underpinnings governing ocular pathophysiology.
Singh M, Tyagi SC., Int J Ophthalmol 10(8), 2017
PMID: 28861360
Singh M, Tyagi SC., Int J Ophthalmol 10(8), 2017
PMID: 28861360
Thermodynamic Basis of Selectivity in the Interactions of Tissue Inhibitors of Metalloproteinases N-domains with Matrix Metalloproteinases-1, -3, and -14.
Zou H, Wu Y, Brew K., J Biol Chem 291(21), 2016
PMID: 27033700
Zou H, Wu Y, Brew K., J Biol Chem 291(21), 2016
PMID: 27033700
Expanding the Activity of Tissue Inhibitors of Metalloproteinase (TIMP)-1 against Surface-Anchored Metalloproteinases by the Replacement of Its C-Terminal Domain: Implications for Anti-Cancer Effects.
Duan JX, Rapti M, Tsigkou A, Lee MH., PLoS One 10(8), 2015
PMID: 26308720
Duan JX, Rapti M, Tsigkou A, Lee MH., PLoS One 10(8), 2015
PMID: 26308720
Weak conservation of structural features in the interfaces of homologous transient protein-protein complexes.
Sudha G, Singh P, Swapna LS, Srinivasan N., Protein Sci 24(11), 2015
PMID: 26311309
Sudha G, Singh P, Swapna LS, Srinivasan N., Protein Sci 24(11), 2015
PMID: 26311309
A peptide derived from TIMP-3 inhibits multiple angiogenic growth factor receptors and tumour growth and inflammatory arthritis in mice.
Chen YY, Brown NJ, Jones R, Lewis CE, Mujamammi AH, Muthana M, Seed MP, Barker MD., Angiogenesis 17(1), 2014
PMID: 24129822
Chen YY, Brown NJ, Jones R, Lewis CE, Mujamammi AH, Muthana M, Seed MP, Barker MD., Angiogenesis 17(1), 2014
PMID: 24129822
Affinity- and specificity-enhancing mutations are frequent in multispecific interactions between TIMP2 and MMPs.
Sharabi O, Shirian J, Grossman M, Lebendiker M, Sagi I, Shifman J., PLoS One 9(4), 2014
PMID: 24710006
Sharabi O, Shirian J, Grossman M, Lebendiker M, Sagi I, Shifman J., PLoS One 9(4), 2014
PMID: 24710006
Histological, histochemical, and protein changes after induced malocclusion by occlusion alteration of Wistar rats.
Guerra Cde S, Carla Lara Pereira Y, Issa JP, Luiz KG, Guimarães EA, Gerlach RF, Iyomasa MM., Biomed Res Int 2014(), 2014
PMID: 25028660
Guerra Cde S, Carla Lara Pereira Y, Issa JP, Luiz KG, Guimarães EA, Gerlach RF, Iyomasa MM., Biomed Res Int 2014(), 2014
PMID: 25028660
Ambidextrous binding of cell and membrane bilayers by soluble matrix metalloproteinase-12.
Koppisetti RK, Fulcher YG, Jurkevich A, Prior SH, Xu J, Lenoir M, Overduin M, Van Doren SR., Nat Commun 5(), 2014
PMID: 25412686
Koppisetti RK, Fulcher YG, Jurkevich A, Prior SH, Xu J, Lenoir M, Overduin M, Van Doren SR., Nat Commun 5(), 2014
PMID: 25412686
Grafting of functional motifs onto protein scaffolds identified by PDB screening--an efficient route to design optimizable protein binders.
Tlatli R, Nozach H, Collet G, Beau F, Vera L, Stura E, Dive V, Cuniasse P., FEBS J 280(1), 2013
PMID: 23121732
Tlatli R, Nozach H, Collet G, Beau F, Vera L, Stura E, Dive V, Cuniasse P., FEBS J 280(1), 2013
PMID: 23121732
Potential clinical applications of matrix metalloproteinase inhibitors and their future prospects.
Li W, Saji S, Sato F, Noda M, Toi M., Int J Biol Markers 28(2), 2013
PMID: 23787494
Li W, Saji S, Sato F, Noda M, Toi M., Int J Biol Markers 28(2), 2013
PMID: 23787494
Crystal structure of full-length human collagenase 3 (MMP-13) with peptides in the active site defines exosites in the catalytic domain.
Stura EA, Visse R, Cuniasse P, Dive V, Nagase H., FASEB J 27(11), 2013
PMID: 23913860
Stura EA, Visse R, Cuniasse P, Dive V, Nagase H., FASEB J 27(11), 2013
PMID: 23913860
Matrix metalloproteinase-10/TIMP-2 structure and analyses define conserved core interactions and diverse exosite interactions in MMP/TIMP complexes.
Batra J, Soares AS, Mehner C, Radisky ES., PLoS One 8(9), 2013
PMID: 24073280
Batra J, Soares AS, Mehner C, Radisky ES., PLoS One 8(9), 2013
PMID: 24073280
TIMP-2: An Endogenous Angiogenesis Inhibitor with Distinct Antitumoral Properties.
Bourboulia D, Jensen-Taubman S, Stetler-Stevenson WG., Treat Strategies Hematol 2(1), 2012
PMID: 31380106
Bourboulia D, Jensen-Taubman S, Stetler-Stevenson WG., Treat Strategies Hematol 2(1), 2012
PMID: 31380106
Matrix metalloproteinase-10 (MMP-10) interaction with tissue inhibitors of metalloproteinases TIMP-1 and TIMP-2: binding studies and crystal structure.
Batra J, Robinson J, Soares AS, Fields AP, Radisky DC, Radisky ES., J Biol Chem 287(19), 2012
PMID: 22427646
Batra J, Robinson J, Soares AS, Fields AP, Radisky DC, Radisky ES., J Biol Chem 287(19), 2012
PMID: 22427646
Ancylostoma ceylanicum excretory-secretory protein 2 adopts a netrin-like fold and defines a novel family of nematode proteins.
Kucera K, Harrison LM, Cappello M, Modis Y., J Mol Biol 408(1), 2011
PMID: 21352830
Kucera K, Harrison LM, Cappello M, Modis Y., J Mol Biol 408(1), 2011
PMID: 21352830
Entropy increases from different sources support the high-affinity binding of the N-terminal inhibitory domains of tissue inhibitors of metalloproteinases to the catalytic domains of matrix metalloproteinases-1 and -3.
Wu Y, Wei S, Van Doren SR, Brew K., J Biol Chem 286(19), 2011
PMID: 21454617
Wu Y, Wei S, Van Doren SR, Brew K., J Biol Chem 286(19), 2011
PMID: 21454617
Dynamic interdomain interactions contribute to the inhibition of matrix metalloproteinases by tissue inhibitors of metalloproteinases.
Remacle AG, Shiryaev SA, Radichev IA, Rozanov DV, Stec B, Strongin AY., J Biol Chem 286(23), 2011
PMID: 21518756
Remacle AG, Shiryaev SA, Radichev IA, Rozanov DV, Stec B, Strongin AY., J Biol Chem 286(23), 2011
PMID: 21518756
Phage display of tissue inhibitor of metalloproteinases-2 (TIMP-2): identification of selective inhibitors of collagenase-1 (metalloproteinase 1 (MMP-1)).
Bahudhanapati H, Zhang Y, Sidhu SS, Brew K., J Biol Chem 286(36), 2011
PMID: 21715326
Bahudhanapati H, Zhang Y, Sidhu SS, Brew K., J Biol Chem 286(36), 2011
PMID: 21715326
Endogenous angiogenesis inhibitor blocks tumor growth via direct and indirect effects on tumor microenvironment.
Bourboulia D, Jensen-Taubman S, Rittler MR, Han HY, Chatterjee T, Wei B, Stetler-Stevenson WG., Am J Pathol 179(5), 2011
PMID: 21933655
Bourboulia D, Jensen-Taubman S, Rittler MR, Han HY, Chatterjee T, Wei B, Stetler-Stevenson WG., Am J Pathol 179(5), 2011
PMID: 21933655
The tissue inhibitors of metalloproteinases (TIMPs): an ancient family with structural and functional diversity.
Brew K, Nagase H., Biochim Biophys Acta 1803(1), 2010
PMID: 20080133
Brew K, Nagase H., Biochim Biophys Acta 1803(1), 2010
PMID: 20080133
Mechanisms of macromolecular protease inhibitors.
Farady CJ, Craik CS., Chembiochem 11(17), 2010
PMID: 21053238
Farady CJ, Craik CS., Chembiochem 11(17), 2010
PMID: 21053238
Structure of an Fab-protease complex reveals a highly specific non-canonical mechanism of inhibition.
Farady CJ, Egea PF, Schneider EL, Darragh MR, Craik CS., J Mol Biol 380(2), 2008
PMID: 18514224
Farady CJ, Egea PF, Schneider EL, Darragh MR, Craik CS., J Mol Biol 380(2), 2008
PMID: 18514224
Structural determinants of the ADAM inhibition by TIMP-3: crystal structure of the TACE-N-TIMP-3 complex.
Wisniewska M, Goettig P, Maskos K, Belouski E, Winters D, Hecht R, Black R, Bode W., J Mol Biol 381(5), 2008
PMID: 18638486
Wisniewska M, Goettig P, Maskos K, Belouski E, Winters D, Hecht R, Black R, Bode W., J Mol Biol 381(5), 2008
PMID: 18638486
Inactivation of N-TIMP-1 by N-terminal acetylation when expressed in bacteria.
Van Doren SR, Wei S, Gao G, DaGue BB, Palmier MO, Bahudhanapati H, Brew K., Biopolymers 89(11), 2008
PMID: 18615493
Van Doren SR, Wei S, Gao G, DaGue BB, Palmier MO, Bahudhanapati H, Brew K., Biopolymers 89(11), 2008
PMID: 18615493
Tissue inhibitor of metalloproteinases-4. The road less traveled.
Melendez-Zajgla J, Del Pozo L, Ceballos G, Maldonado V., Mol Cancer 7(), 2008
PMID: 19025595
Melendez-Zajgla J, Del Pozo L, Ceballos G, Maldonado V., Mol Cancer 7(), 2008
PMID: 19025595
Simultaneous presence of unsaturation and long alkyl chain at P'1 of Ilomastat confers selectivity for gelatinase A (MMP-2) over gelatinase B (MMP-9) inhibition as shown by molecular modelling studies.
Moroy G, Denhez C, El Mourabit H, Toribio A, Dassonville A, Decarme M, Renault JH, Mirand C, Bellon G, Sapi J, Alix AJ, Hornebeck W, Bourguet E., Bioorg Med Chem 15(14), 2007
PMID: 17512742
Moroy G, Denhez C, El Mourabit H, Toribio A, Dassonville A, Decarme M, Renault JH, Mirand C, Bellon G, Sapi J, Alix AJ, Hornebeck W, Bourguet E., Bioorg Med Chem 15(14), 2007
PMID: 17512742
Engineered sarafotoxins as tissue inhibitor of metalloproteinases-like matrix metalloproteinase inhibitors.
Lauer-Fields JL, Cudic M, Wei S, Mari F, Fields GB, Brew K., J Biol Chem 282(37), 2007
PMID: 17626018
Lauer-Fields JL, Cudic M, Wei S, Mari F, Fields GB, Brew K., J Biol Chem 282(37), 2007
PMID: 17626018
Constraining specificity in the N-domain of tissue inhibitor of metalloproteinases-1; gelatinase-selective inhibitors.
Hamze AB, Wei S, Bahudhanapati H, Kota S, Acharya KR, Brew K., Protein Sci 16(9), 2007
PMID: 17660250
Hamze AB, Wei S, Bahudhanapati H, Kota S, Acharya KR, Brew K., Protein Sci 16(9), 2007
PMID: 17660250
55 References
Daten bereitgestellt von Europe PubMed Central.
Matrix metalloproteinases: a tail of a frog that became a prince.
Brinckerhoff CE, Matrisian LM., Nat. Rev. Mol. Cell Biol. 3(3), 2002
PMID: 11994741
Brinckerhoff CE, Matrisian LM., Nat. Rev. Mol. Cell Biol. 3(3), 2002
PMID: 11994741
Structure and function of matrix metalloproteinases and TIMPs.
Nagase H, Visse R, Murphy G., Cardiovasc. Res. 69(3), 2006
PMID: 16405877
Nagase H, Visse R, Murphy G., Cardiovasc. Res. 69(3), 2006
PMID: 16405877
Matrix metalloproteinases and tissue inhibitors of metalloproteinases: structure, function, and biochemistry.
Visse R, Nagase H., Circ. Res. 92(8), 2003
PMID: 12730128
Visse R, Nagase H., Circ. Res. 92(8), 2003
PMID: 12730128
Structural basis of matrix metalloproteinases and tissue inhibitors of metalloproteinases.
Maskos K, Bode W., Mol. Biotechnol. 25(3), 2003
PMID: 14668538
Maskos K, Bode W., Mol. Biotechnol. 25(3), 2003
PMID: 14668538
Crystal structures of MMPs in complex with physiological and pharmacological inhibitors.
Maskos K., Biochimie 87(3-4), 2005
PMID: 15781312
Maskos K., Biochimie 87(3-4), 2005
PMID: 15781312
Tissue inhibitors of metalloproteinases: evolution, structure and function.
Brew K, Dinakarpandian D, Nagase H., Biochim. Biophys. Acta 1477(1-2), 2000
PMID: 10708863
Brew K, Dinakarpandian D, Nagase H., Biochim. Biophys. Acta 1477(1-2), 2000
PMID: 10708863
Regulation of matrix biology by matrix metalloproteinases.
Mott JD, Werb Z., Curr. Opin. Cell Biol. 16(5), 2004
PMID: 15363807
Mott JD, Werb Z., Curr. Opin. Cell Biol. 16(5), 2004
PMID: 15363807
Extracellular matrix remodelling: the role of matrix metalloproteinases.
Stamenkovic I., J. Pathol. 200(4), 2003
PMID: 12845612
Stamenkovic I., J. Pathol. 200(4), 2003
PMID: 12845612
Tumour microenvironment - opinion: validating matrix metalloproteinases as drug targets and anti-targets for cancer therapy.
Overall CM, Kleifeld O., Nat. Rev. Cancer 6(3), 2006
PMID: 16498445
Overall CM, Kleifeld O., Nat. Rev. Cancer 6(3), 2006
PMID: 16498445
Proteolysis of the collagen fibril in osteoarthritis
Poole, Biochem. Soc. Symp. 70(), 2003
Poole, Biochem. Soc. Symp. 70(), 2003
Biochemical characterization of human collagenase-3.
Knauper V, Lopez-Otin C, Smith B, Knight G, Murphy G., J. Biol. Chem. 271(3), 1996
PMID: 8576151
Knauper V, Lopez-Otin C, Smith B, Knight G, Murphy G., J. Biol. Chem. 271(3), 1996
PMID: 8576151
The role of the C-terminal domain of human collagenase-3 (MMP-13) in the activation of procollagenase-3, substrate specificity, and tissue inhibitor of metalloproteinase interaction.
Knauper V, Cowell S, Smith B, Lopez-Otin C, O'Shea M, Morris H, Zardi L, Murphy G., J. Biol. Chem. 272(12), 1997
PMID: 9065415
Knauper V, Cowell S, Smith B, Lopez-Otin C, O'Shea M, Morris H, Zardi L, Murphy G., J. Biol. Chem. 272(12), 1997
PMID: 9065415
An overview of collagenase-3 expression in malignant tumors and analysis of its potential value as a target in antitumor therapies.
Pendas AM, Uria JA, Jimenez MG, Balbin M, Freije JP, Lopez-Otin C., Clin. Chim. Acta 291(2), 2000
PMID: 10675720
Pendas AM, Uria JA, Jimenez MG, Balbin M, Freije JP, Lopez-Otin C., Clin. Chim. Acta 291(2), 2000
PMID: 10675720
Molecular cloning and expression of collagenase-3, a novel human matrix metalloproteinase produced by breast carcinomas.
Freije JM, Diez-Itza I, Balbin M, Sanchez LM, Blasco R, Tolivia J, Lopez-Otin C., J. Biol. Chem. 269(24), 1994
PMID: 8207000
Freije JM, Diez-Itza I, Balbin M, Sanchez LM, Blasco R, Tolivia J, Lopez-Otin C., J. Biol. Chem. 269(24), 1994
PMID: 8207000
Expression of collagenase-3 (MMP-13) enhances invasion of human fibrosarcoma HT-1080 cells.
Ala-Aho R, Johansson N, Baker AH, Kahari VM., Int. J. Cancer 97(3), 2002
PMID: 11774278
Ala-Aho R, Johansson N, Baker AH, Kahari VM., Int. J. Cancer 97(3), 2002
PMID: 11774278
Elevated expression of MMP-13 and TIMP-1 in head and neck squamous cell carcinomas may reflect increased tumor invasiveness.
Culhaci N, Metin K, Copcu E, Dikicioglu E., BMC Cancer 4(), 2004
PMID: 15291964
Culhaci N, Metin K, Copcu E, Dikicioglu E., BMC Cancer 4(), 2004
PMID: 15291964
Expression profiling of metalloproteinases and their inhibitors in cartilage.
Kevorkian L, Young DA, Darrah C, Donell ST, Shepstone L, Porter S, Brockbank SM, Edwards DR, Parker AE, Clark IM., Arthritis Rheum. 50(1), 2004
PMID: 14730609
Kevorkian L, Young DA, Darrah C, Donell ST, Shepstone L, Porter S, Brockbank SM, Edwards DR, Parker AE, Clark IM., Arthritis Rheum. 50(1), 2004
PMID: 14730609
Targeted inhibition of human collagenase-3 (MMP-13) expression inhibits squamous cell carcinoma growth in vivo.
Ala-aho R, Ahonen M, George SJ, Heikkila J, Grenman R, Kallajoki M, Kahari VM., Oncogene 23(30), 2004
PMID: 15094779
Ala-aho R, Ahonen M, George SJ, Heikkila J, Grenman R, Kallajoki M, Kahari VM., Oncogene 23(30), 2004
PMID: 15094779
Structural basis for the highly selective inhibition of MMP-13.
Engel CK, Pirard B, Schimanski S, Kirsch R, Habermann J, Klingler O, Schlotte V, Weithmann KU, Wendt KU., Chem. Biol. 12(2), 2005
PMID: 15734645
Engel CK, Pirard B, Schimanski S, Kirsch R, Habermann J, Klingler O, Schlotte V, Weithmann KU, Wendt KU., Chem. Biol. 12(2), 2005
PMID: 15734645
Threonine 98, the pivotal residue of tissue inhibitor of metalloproteinases (TIMP)-1 in metalloproteinase recognition.
Lee MH, Rapti M, Knauper V, Murphy G., J. Biol. Chem. 279(17), 2004
PMID: 14734567
Lee MH, Rapti M, Knauper V, Murphy G., J. Biol. Chem. 279(17), 2004
PMID: 14734567
The effect of matrix metalloproteinase complex formation on the conformational mobility of tissue inhibitor of metalloproteinases-2 (TIMP-2).
Williamson RA, Muskett FW, Howard MJ, Freedman RB, Carr MD., J. Biol. Chem. 274(52), 1999
PMID: 10601286
Williamson RA, Muskett FW, Howard MJ, Freedman RB, Carr MD., J. Biol. Chem. 274(52), 1999
PMID: 10601286
Global orientation of bound MMP-3 and N-TIMP-1 in solution via residual dipolar couplings.
Arumugam S, Van Doren SR., Biochemistry 42(26), 2003
PMID: 12834347
Arumugam S, Van Doren SR., Biochemistry 42(26), 2003
PMID: 12834347
Mechanism of inhibition of the human matrix metalloproteinase stromelysin-1 by TIMP-1.
Gomis-Ruth FX, Maskos K, Betz M, Bergner A, Huber R, Suzuki K, Yoshida N, Nagase H, Brew K, Bourenkov GP, Bartunik H, Bode W., Nature 389(6646), 1997
PMID: 9288970
Gomis-Ruth FX, Maskos K, Betz M, Bergner A, Huber R, Suzuki K, Yoshida N, Nagase H, Brew K, Bourenkov GP, Bartunik H, Bode W., Nature 389(6646), 1997
PMID: 9288970
Crystal structure of the complex formed by the membrane type 1-matrix metalloproteinase with the tissue inhibitor of metalloproteinases-2, the soluble progelatinase A receptor.
Fernandez-Catalan C, Bode W, Huber R, Turk D, Calvete JJ, Lichte A, Tschesche H, Maskos K., EMBO J. 17(17), 1998
PMID: 9724659
Fernandez-Catalan C, Bode W, Huber R, Turk D, Calvete JJ, Lichte A, Tschesche H, Maskos K., EMBO J. 17(17), 1998
PMID: 9724659
Crystal structures of MMP-1 and -13 reveal the structural basis for selectivity of collagenase inhibitors.
Lovejoy B, Welch AR, Carr S, Luong C, Broka C, Hendricks RT, Campbell JA, Walker KA, Martin R, Van Wart H, Browner MF., Nat. Struct. Biol. 6(3), 1999
PMID: 10074939
Lovejoy B, Welch AR, Carr S, Luong C, Broka C, Hendricks RT, Campbell JA, Walker KA, Martin R, Van Wart H, Browner MF., Nat. Struct. Biol. 6(3), 1999
PMID: 10074939
Structure of recombinant mouse collagenase-3 (MMP-13).
Botos I, Meyer E, Swanson SM, Lemaitre V, Eeckhout Y, Meyer EF., J. Mol. Biol. 292(4), 1999
PMID: 10525409
Botos I, Meyer E, Swanson SM, Lemaitre V, Eeckhout Y, Meyer EF., J. Mol. Biol. 292(4), 1999
PMID: 10525409
Solution structure of the catalytic domain of human collagenase-3 (MMP-13) complexed to a potent non-peptidic sulfonamide inhibitor: binding comparison with stromelysin-1 and collagenase-1.
Zhang X, Gonnella NC, Koehn J, Pathak N, Ganu V, Melton R, Parker D, Hu SI, Nam KY., J. Mol. Biol. 301(2), 2000
PMID: 10926524
Zhang X, Gonnella NC, Koehn J, Pathak N, Ganu V, Melton R, Parker D, Hu SI, Nam KY., J. Mol. Biol. 301(2), 2000
PMID: 10926524
High-resolution solution structure of the catalytic fragment of human collagenase-3 (MMP-13) complexed with a hydroxamic acid inhibitor.
Moy FJ, Chanda PK, Chen JM, Cosmi S, Edris W, Levin JI, Powers R., J. Mol. Biol. 302(3), 2000
PMID: 10986126
Moy FJ, Chanda PK, Chen JM, Cosmi S, Edris W, Levin JI, Powers R., J. Mol. Biol. 302(3), 2000
PMID: 10986126
Structural basis of the matrix metalloproteinases and their physiological inhibitors, the tissue inhibitors of metalloproteinases.
Bode W, Maskos K., Biol. Chem. 384(6), 2003
PMID: 12887053
Bode W, Maskos K., Biol. Chem. 384(6), 2003
PMID: 12887053
Astacins, serralysins, snake venom and matrix metalloproteinases exhibit identical zinc-binding environments (HEXXHXXGXXH and Met-turn) and topologies and should be grouped into a common family, the 'metzincins'.
Bode W, Gomis-Ruth FX, Stockler W., FEBS Lett. 331(1-2), 1993
PMID: 8405391
Bode W, Gomis-Ruth FX, Stockler W., FEBS Lett. 331(1-2), 1993
PMID: 8405391
Structural implications for the role of the N terminus in the 'superactivation' of collagenases. A crystallographic study.
Reinemer P, Grams F, Huber R, Kleine T, Schnierer S, Piper M, Tschesche H, Bode W., FEBS Lett. 338(2), 1994
PMID: 8307185
Reinemer P, Grams F, Huber R, Kleine T, Schnierer S, Piper M, Tschesche H, Bode W., FEBS Lett. 338(2), 1994
PMID: 8307185
Activation mechanisms of matrix metalloproteinases.
Nagase H., Biol. Chem. 378(3-4), 1997
PMID: 9165065
Nagase H., Biol. Chem. 378(3-4), 1997
PMID: 9165065
The N-terminus of collagenase MMP-8 determines superactivity and inhibition: a relation of structure and function analyzed by biomolecular interaction analysis.
Farr M, Pieper M, Calvete J, Tschesche H., Biochemistry 38(22), 1999
PMID: 10353844
Farr M, Pieper M, Calvete J, Tschesche H., Biochemistry 38(22), 1999
PMID: 10353844
The 1.8-A crystal structure of a matrix metalloproteinase 8-barbiturate inhibitor complex reveals a previously unobserved mechanism for collagenase substrate recognition.
Brandstetter H, Grams F, Glitz D, Lang A, Huber R, Bode W, Krell HW, Engh RA., J. Biol. Chem. 276(20), 2001
PMID: 11278347
Brandstetter H, Grams F, Glitz D, Lang A, Huber R, Bode W, Krell HW, Engh RA., J. Biol. Chem. 276(20), 2001
PMID: 11278347
X-ray structure of human proMMP-1: new insights into procollagenase activation and collagen binding.
Jozic D, Bourenkov G, Lim NH, Visse R, Nagase H, Bode W, Maskos K., J. Biol. Chem. 280(10), 2004
PMID: 15611040
Jozic D, Bourenkov G, Lim NH, Visse R, Nagase H, Bode W, Maskos K., J. Biol. Chem. 280(10), 2004
PMID: 15611040
Identification of the (183)RWTNNFREY(191) region as a critical segment of matrix metalloproteinase 1 for the expression of collagenolytic activity.
Chung L, Shimokawa K, Dinakarpandian D, Grams F, Fields GB, Nagase H., J. Biol. Chem. 275(38), 2000
PMID: 10871619
Chung L, Shimokawa K, Dinakarpandian D, Grams F, Fields GB, Nagase H., J. Biol. Chem. 275(38), 2000
PMID: 10871619
Collagenase unwinds triple-helical collagen prior to peptide bond hydrolysis.
Chung L, Dinakarpandian D, Yoshida N, Lauer-Fields JL, Fields GB, Visse R, Nagase H., EMBO J. 23(15), 2004
PMID: 15257288
Chung L, Dinakarpandian D, Yoshida N, Lauer-Fields JL, Fields GB, Visse R, Nagase H., EMBO J. 23(15), 2004
PMID: 15257288
Pivotal molecular determinants of peptidic and collagen triple helicase activities reside in the S3' subsite of matrix metalloproteinase 8 (MMP-8): the role of hydrogen bonding potential of ASN188 and TYR189 and the connecting cis bond.
Pelman GR, Morrison CJ, Overall CM., J. Biol. Chem. 280(3), 2004
PMID: 15533938
Pelman GR, Morrison CJ, Overall CM., J. Biol. Chem. 280(3), 2004
PMID: 15533938
The C-terminal region of membrane type matrix metalloproteinase is a functional transmembrane domain required for pro-gelatinase A activation.
Cao J, Sato H, Takino T, Seiki M., J. Biol. Chem. 270(2), 1995
PMID: 7822314
Cao J, Sato H, Takino T, Seiki M., J. Biol. Chem. 270(2), 1995
PMID: 7822314
The TIMP2 membrane type 1 metalloproteinase "receptor" regulates the concentration and efficient activation of progelatinase A. A kinetic study.
Butler GS, Butler MJ, Atkinson SJ, Will H, Tamura T, Schade van Westrum S, Crabbe T, Clements J, d'Ortho MP, Murphy G., J. Biol. Chem. 273(2), 1998
PMID: 9422744
Butler GS, Butler MJ, Atkinson SJ, Will H, Tamura T, Schade van Westrum S, Crabbe T, Clements J, d'Ortho MP, Murphy G., J. Biol. Chem. 273(2), 1998
PMID: 9422744
Structural insight into the complex formation of latent matrix metalloproteinase 2 with tissue inhibitor of metalloproteinase 2.
Morgunova E, Tuuttila A, Bergmann U, Tryggvason K., Proc. Natl. Acad. Sci. U.S.A. 99(11), 2002
PMID: 12032297
Morgunova E, Tuuttila A, Bergmann U, Tryggvason K., Proc. Natl. Acad. Sci. U.S.A. 99(11), 2002
PMID: 12032297
Three-dimensional structure of human tissue inhibitor of metalloproteinases-2 at 2.1 A resolution.
Tuuttila A, Morgunova E, Bergmann U, Lindqvist Y, Maskos K, Fernandez-Catalan C, Bode W, Tryggvason K, Schneider G., J. Mol. Biol. 284(4), 1998
PMID: 9837731
Tuuttila A, Morgunova E, Bergmann U, Lindqvist Y, Maskos K, Fernandez-Catalan C, Bode W, Tryggvason K, Schneider G., J. Mol. Biol. 284(4), 1998
PMID: 9837731
High resolution structure of the N-terminal domain of tissue inhibitor of metalloproteinases-2 and characterization of its interaction site with matrix metalloproteinase-3.
Muskett FW, Frenkiel TA, Feeney J, Freedman RB, Carr MD, Williamson RA., J. Biol. Chem. 273(34), 1998
PMID: 9705310
Muskett FW, Frenkiel TA, Feeney J, Freedman RB, Carr MD, Williamson RA., J. Biol. Chem. 273(34), 1998
PMID: 9705310
Matrix metalloproteinases collagenase-2, macrophage elastase, collagenase-3, and membrane type 1-matrix metalloproteinase impair clotting by degradation of fibrinogen and factor XII.
Hiller O, Lichte A, Oberpichler A, Kocourek A, Tschesche H., J. Biol. Chem. 275(42), 2000
PMID: 10930399
Hiller O, Lichte A, Oberpichler A, Kocourek A, Tschesche H., J. Biol. Chem. 275(42), 2000
PMID: 10930399
A procedure for the large-scale isolation of major bovine seminal plasma proteins.
Calvete JJ, Varela PF, Sanz L, Romero A, Mann K, Topfer-Petersen E., Protein Expr. Purif. 8(1), 1996
PMID: 8812834
Calvete JJ, Varela PF, Sanz L, Romero A, Mann K, Topfer-Petersen E., Protein Expr. Purif. 8(1), 1996
PMID: 8812834
[20] Processing of X-ray diffraction data collected in oscillation mode.
Otwinowski Z, Minor W., Meth. Enzymol. 276(), 1997
PMID: 27799103
Otwinowski Z, Minor W., Meth. Enzymol. 276(), 1997
PMID: 27799103
AMoRe: an automated package for molecular replacement
Navaza, Acta Crystallog. sect. A 50(), 1994
Navaza, Acta Crystallog. sect. A 50(), 1994
Brünger, 1992
Accurate bond and angle parameters for X-ray protein-structure refinement
Engh, Acta Crystallog. sect. A 47(), 1991
Engh, Acta Crystallog. sect. A 47(), 1991
Crystallography & NMR system: A new software suite for macromolecular structure determination.
Brunger AT, Adams PD, Clore GM, DeLano WL, Gros P, Grosse-Kunstleve RW, Jiang JS, Kuszewski J, Nilges M, Pannu NS, Read RJ, Rice LM, Simonson T, Warren GL., Acta Crystallogr. D Biol. Crystallogr. 54(Pt 5), 1998
PMID: 9757107
Brunger AT, Adams PD, Clore GM, DeLano WL, Gros P, Grosse-Kunstleve RW, Jiang JS, Kuszewski J, Nilges M, Pannu NS, Read RJ, Rice LM, Simonson T, Warren GL., Acta Crystallogr. D Biol. Crystallogr. 54(Pt 5), 1998
PMID: 9757107
Improved methods for building protein models in electron density maps and the location of errors in these models.
Jones TA, Zou JY, Cowan SW, Kjeldgaard M., Acta Crystallogr., A, Found. Crystallogr. 47 ( Pt 2)(), 1991
PMID: 2025413
Jones TA, Zou JY, Cowan SW, Kjeldgaard M., Acta Crystallogr., A, Found. Crystallogr. 47 ( Pt 2)(), 1991
PMID: 2025413
AUTHOR UNKNOWN, 0
The CCP4 suite: programs for protein crystallography.
Collaborative Computational Project, Number 4., Acta Crystallogr. D Biol. Crystallogr. 50(Pt 5), 1994
PMID: 15299374
Collaborative Computational Project, Number 4., Acta Crystallogr. D Biol. Crystallogr. 50(Pt 5), 1994
PMID: 15299374
PROCHECK: a program to check the stereochemical quality of protein structures.
Laskowski RA, MacArthur MW, Moss DS, Thornton JM., J Appl Crystallogr 26(2), 1993
PMID: c6802
Laskowski RA, MacArthur MW, Moss DS, Thornton JM., J Appl Crystallogr 26(2), 1993
PMID: c6802
Export
Markieren/ Markierung löschen
Markierte Publikationen
Web of Science
Dieser Datensatz im Web of Science®Quellen
PMID: 17196980
PubMed | Europe PMC
Suchen in