Flexibility and variability of TIMP binding: X-ray structure of the complex between collagenase-3/MMP-13 and TIMP-2
Maskos K, Lang R, Tschesche H, Bode W (2007)
JOURNAL OF MOLECULAR BIOLOGY 366(4): 1222-1231.
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Autor*in
Maskos, K.;
Lang, R.;
Tschesche, HaraldUniBi;
Bode, W.
Einrichtung
Abstract / Bemerkung
The excessive activity of matrix metalloproteinases (MMPs) contributes to pathological processes such as arthritis, tumor growth and metastasis if not balanced by the tissue inhibitors of metalloproteinases (TIMPs). In arthritis, the destruction of fibrillar (type 11) collagen is one of the hallmarks, with MMP-1 (collagenase-1) and NIW-13 (collagenase-3) being identified as key players in arthritic cartilage. MMP-13, furthermore, has been found in highly metastatic tumors. We have solved the 2.0 angstrom crystal structure of the complex between the catalytic domain of human MMP-13 (cdMMP-13) and bovine TIMP-2. The overall structure resembles our previously determined MT1-MMP/TIMP-2 complex, in that the wedge-shaped TIMP-2 inserts with its edge into the entire MMP-13 active site cleft. However, the inhibitor is, according to a relative rotation of similar to 20 degrees, oriented differently relative to the proteinase. Upon TIMP binding, the catalytic zinc, the zinc-ligating side chains, the enclosing MMP loop and the S1' wall-forming segment move significantly and in concert relative to the rest of the cognate MMP, and the active site cleft constricts slightly, probably allowing a more favourable interaction between the Cys1(TIMP) alpha-amino group of the inhibitor and the catalytic zinc ion of the enzyme. Thus, this structure supports the view that the central N-terminal TIMP segment essentially defines the relative positioning of the TIMP, while the flanking edge loops determine the relative orientation, depending on the individual target MMP. (c) 2006 Elsevier Ltd. All rights reserved.
Stichworte
matrix metalloproteinase/MMP;
tissue inhibitor of;
metalloproteinases/TIMP;
complex;
collagenase;
flexibility
Erscheinungsjahr
2007
Zeitschriftentitel
JOURNAL OF MOLECULAR BIOLOGY
Band
366
Ausgabe
4
Seite(n)
1222-1231
ISSN
0022-2836
Page URI
https://pub.uni-bielefeld.de/record/1595220
Zitieren
Maskos K, Lang R, Tschesche H, Bode W. Flexibility and variability of TIMP binding: X-ray structure of the complex between collagenase-3/MMP-13 and TIMP-2. JOURNAL OF MOLECULAR BIOLOGY. 2007;366(4):1222-1231.
Maskos, K., Lang, R., Tschesche, H., & Bode, W. (2007). Flexibility and variability of TIMP binding: X-ray structure of the complex between collagenase-3/MMP-13 and TIMP-2. JOURNAL OF MOLECULAR BIOLOGY, 366(4), 1222-1231. https://doi.org/10.1016/j.jmb.2006.11.072
Maskos, K., Lang, R., Tschesche, Harald, and Bode, W. 2007. “Flexibility and variability of TIMP binding: X-ray structure of the complex between collagenase-3/MMP-13 and TIMP-2”. JOURNAL OF MOLECULAR BIOLOGY 366 (4): 1222-1231.
Maskos, K., Lang, R., Tschesche, H., and Bode, W. (2007). Flexibility and variability of TIMP binding: X-ray structure of the complex between collagenase-3/MMP-13 and TIMP-2. JOURNAL OF MOLECULAR BIOLOGY 366, 1222-1231.
Maskos, K., et al., 2007. Flexibility and variability of TIMP binding: X-ray structure of the complex between collagenase-3/MMP-13 and TIMP-2. JOURNAL OF MOLECULAR BIOLOGY, 366(4), p 1222-1231.
K. Maskos, et al., “Flexibility and variability of TIMP binding: X-ray structure of the complex between collagenase-3/MMP-13 and TIMP-2”, JOURNAL OF MOLECULAR BIOLOGY, vol. 366, 2007, pp. 1222-1231.
Maskos, K., Lang, R., Tschesche, H., Bode, W.: Flexibility and variability of TIMP binding: X-ray structure of the complex between collagenase-3/MMP-13 and TIMP-2. JOURNAL OF MOLECULAR BIOLOGY. 366, 1222-1231 (2007).
Maskos, K., Lang, R., Tschesche, Harald, and Bode, W. “Flexibility and variability of TIMP binding: X-ray structure of the complex between collagenase-3/MMP-13 and TIMP-2”. JOURNAL OF MOLECULAR BIOLOGY 366.4 (2007): 1222-1231.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
PDB
1 Eintrag gefunden, die diesen Artikel zitieren
x-ray diffraction (PDB: 2e2d)
Protein structure name: flexibility and variability of timp binding: x-ray structure of the complex between collagenase-3/mmp-13 and timp-2
Public wwPDB file in PDB format
Protein structure name: flexibility and variability of timp binding: x-ray structure of the complex between collagenase-3/mmp-13 and timp-2
Public wwPDB file in PDB format
INTERPRO
8 Einträge gefunden, die diesen Artikel zitieren
TIMP-like_OB-fold (INTERPRO: IPR008993)
Protein family/domain name: Tissue inhibitor of metalloproteinases-like, OB-fold
Protein family/domain name: Tissue inhibitor of metalloproteinases-like, OB-fold
Pept_M10_metallopeptidase (INTERPRO: IPR001818)
Protein family/domain name: Peptidase M10, metallopeptidase
Protein family/domain name: Peptidase M10, metallopeptidase
Pept_M10A_stromelysin-type (INTERPRO: IPR016293)
Protein family/domain name: Peptidase M10A, stromelysin-type
Protein family/domain name: Peptidase M10A, stromelysin-type
UNIPROT
9 Einträge gefunden, die diesen Artikel zitieren
Collagenase-3 splice variant COL3-9B-2 (UNIPROT: Q7Z5M1)
Organism: Homo sapiens
Download in FASTA format
Organism: Homo sapiens
Download in FASTA format
Matrix metalloproteinase 13 preproprotein variant (UNIPROT: Q53H33)
Organism: Homo sapiens
Download in FASTA format
Organism: Homo sapiens
Download in FASTA format
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Lovejoy B, Welch AR, Carr S, Luong C, Broka C, Hendricks RT, Campbell JA, Walker KA, Martin R, Van Wart H, Browner MF., Nat. Struct. Biol. 6(3), 1999
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Lovejoy B, Welch AR, Carr S, Luong C, Broka C, Hendricks RT, Campbell JA, Walker KA, Martin R, Van Wart H, Browner MF., Nat. Struct. Biol. 6(3), 1999
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Structure of recombinant mouse collagenase-3 (MMP-13).
Botos I, Meyer E, Swanson SM, Lemaitre V, Eeckhout Y, Meyer EF., J. Mol. Biol. 292(4), 1999
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Botos I, Meyer E, Swanson SM, Lemaitre V, Eeckhout Y, Meyer EF., J. Mol. Biol. 292(4), 1999
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Solution structure of the catalytic domain of human collagenase-3 (MMP-13) complexed to a potent non-peptidic sulfonamide inhibitor: binding comparison with stromelysin-1 and collagenase-1.
Zhang X, Gonnella NC, Koehn J, Pathak N, Ganu V, Melton R, Parker D, Hu SI, Nam KY., J. Mol. Biol. 301(2), 2000
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Zhang X, Gonnella NC, Koehn J, Pathak N, Ganu V, Melton R, Parker D, Hu SI, Nam KY., J. Mol. Biol. 301(2), 2000
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High-resolution solution structure of the catalytic fragment of human collagenase-3 (MMP-13) complexed with a hydroxamic acid inhibitor.
Moy FJ, Chanda PK, Chen JM, Cosmi S, Edris W, Levin JI, Powers R., J. Mol. Biol. 302(3), 2000
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Moy FJ, Chanda PK, Chen JM, Cosmi S, Edris W, Levin JI, Powers R., J. Mol. Biol. 302(3), 2000
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Structural basis of the matrix metalloproteinases and their physiological inhibitors, the tissue inhibitors of metalloproteinases.
Bode W, Maskos K., Biol. Chem. 384(6), 2003
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Bode W, Maskos K., Biol. Chem. 384(6), 2003
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Astacins, serralysins, snake venom and matrix metalloproteinases exhibit identical zinc-binding environments (HEXXHXXGXXH and Met-turn) and topologies and should be grouped into a common family, the 'metzincins'.
Bode W, Gomis-Ruth FX, Stockler W., FEBS Lett. 331(1-2), 1993
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Bode W, Gomis-Ruth FX, Stockler W., FEBS Lett. 331(1-2), 1993
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Structural implications for the role of the N terminus in the 'superactivation' of collagenases. A crystallographic study.
Reinemer P, Grams F, Huber R, Kleine T, Schnierer S, Piper M, Tschesche H, Bode W., FEBS Lett. 338(2), 1994
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Activation mechanisms of matrix metalloproteinases.
Nagase H., Biol. Chem. 378(3-4), 1997
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Nagase H., Biol. Chem. 378(3-4), 1997
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The N-terminus of collagenase MMP-8 determines superactivity and inhibition: a relation of structure and function analyzed by biomolecular interaction analysis.
Farr M, Pieper M, Calvete J, Tschesche H., Biochemistry 38(22), 1999
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Farr M, Pieper M, Calvete J, Tschesche H., Biochemistry 38(22), 1999
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The 1.8-A crystal structure of a matrix metalloproteinase 8-barbiturate inhibitor complex reveals a previously unobserved mechanism for collagenase substrate recognition.
Brandstetter H, Grams F, Glitz D, Lang A, Huber R, Bode W, Krell HW, Engh RA., J. Biol. Chem. 276(20), 2001
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Brandstetter H, Grams F, Glitz D, Lang A, Huber R, Bode W, Krell HW, Engh RA., J. Biol. Chem. 276(20), 2001
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X-ray structure of human proMMP-1: new insights into procollagenase activation and collagen binding.
Jozic D, Bourenkov G, Lim NH, Visse R, Nagase H, Bode W, Maskos K., J. Biol. Chem. 280(10), 2004
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Jozic D, Bourenkov G, Lim NH, Visse R, Nagase H, Bode W, Maskos K., J. Biol. Chem. 280(10), 2004
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Identification of the (183)RWTNNFREY(191) region as a critical segment of matrix metalloproteinase 1 for the expression of collagenolytic activity.
Chung L, Shimokawa K, Dinakarpandian D, Grams F, Fields GB, Nagase H., J. Biol. Chem. 275(38), 2000
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Chung L, Shimokawa K, Dinakarpandian D, Grams F, Fields GB, Nagase H., J. Biol. Chem. 275(38), 2000
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Collagenase unwinds triple-helical collagen prior to peptide bond hydrolysis.
Chung L, Dinakarpandian D, Yoshida N, Lauer-Fields JL, Fields GB, Visse R, Nagase H., EMBO J. 23(15), 2004
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Chung L, Dinakarpandian D, Yoshida N, Lauer-Fields JL, Fields GB, Visse R, Nagase H., EMBO J. 23(15), 2004
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Pivotal molecular determinants of peptidic and collagen triple helicase activities reside in the S3' subsite of matrix metalloproteinase 8 (MMP-8): the role of hydrogen bonding potential of ASN188 and TYR189 and the connecting cis bond.
Pelman GR, Morrison CJ, Overall CM., J. Biol. Chem. 280(3), 2004
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Pelman GR, Morrison CJ, Overall CM., J. Biol. Chem. 280(3), 2004
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The C-terminal region of membrane type matrix metalloproteinase is a functional transmembrane domain required for pro-gelatinase A activation.
Cao J, Sato H, Takino T, Seiki M., J. Biol. Chem. 270(2), 1995
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Cao J, Sato H, Takino T, Seiki M., J. Biol. Chem. 270(2), 1995
PMID: 7822314
The TIMP2 membrane type 1 metalloproteinase "receptor" regulates the concentration and efficient activation of progelatinase A. A kinetic study.
Butler GS, Butler MJ, Atkinson SJ, Will H, Tamura T, Schade van Westrum S, Crabbe T, Clements J, d'Ortho MP, Murphy G., J. Biol. Chem. 273(2), 1998
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Butler GS, Butler MJ, Atkinson SJ, Will H, Tamura T, Schade van Westrum S, Crabbe T, Clements J, d'Ortho MP, Murphy G., J. Biol. Chem. 273(2), 1998
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Structural insight into the complex formation of latent matrix metalloproteinase 2 with tissue inhibitor of metalloproteinase 2.
Morgunova E, Tuuttila A, Bergmann U, Tryggvason K., Proc. Natl. Acad. Sci. U.S.A. 99(11), 2002
PMID: 12032297
Morgunova E, Tuuttila A, Bergmann U, Tryggvason K., Proc. Natl. Acad. Sci. U.S.A. 99(11), 2002
PMID: 12032297
Three-dimensional structure of human tissue inhibitor of metalloproteinases-2 at 2.1 A resolution.
Tuuttila A, Morgunova E, Bergmann U, Lindqvist Y, Maskos K, Fernandez-Catalan C, Bode W, Tryggvason K, Schneider G., J. Mol. Biol. 284(4), 1998
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Tuuttila A, Morgunova E, Bergmann U, Lindqvist Y, Maskos K, Fernandez-Catalan C, Bode W, Tryggvason K, Schneider G., J. Mol. Biol. 284(4), 1998
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High resolution structure of the N-terminal domain of tissue inhibitor of metalloproteinases-2 and characterization of its interaction site with matrix metalloproteinase-3.
Muskett FW, Frenkiel TA, Feeney J, Freedman RB, Carr MD, Williamson RA., J. Biol. Chem. 273(34), 1998
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Muskett FW, Frenkiel TA, Feeney J, Freedman RB, Carr MD, Williamson RA., J. Biol. Chem. 273(34), 1998
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Matrix metalloproteinases collagenase-2, macrophage elastase, collagenase-3, and membrane type 1-matrix metalloproteinase impair clotting by degradation of fibrinogen and factor XII.
Hiller O, Lichte A, Oberpichler A, Kocourek A, Tschesche H., J. Biol. Chem. 275(42), 2000
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Hiller O, Lichte A, Oberpichler A, Kocourek A, Tschesche H., J. Biol. Chem. 275(42), 2000
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A procedure for the large-scale isolation of major bovine seminal plasma proteins.
Calvete JJ, Varela PF, Sanz L, Romero A, Mann K, Topfer-Petersen E., Protein Expr. Purif. 8(1), 1996
PMID: 8812834
Calvete JJ, Varela PF, Sanz L, Romero A, Mann K, Topfer-Petersen E., Protein Expr. Purif. 8(1), 1996
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[20] Processing of X-ray diffraction data collected in oscillation mode.
Otwinowski Z, Minor W., Meth. Enzymol. 276(), 1997
PMID: 27799103
Otwinowski Z, Minor W., Meth. Enzymol. 276(), 1997
PMID: 27799103
AMoRe: an automated package for molecular replacement
Navaza, Acta Crystallog. sect. A 50(), 1994
Navaza, Acta Crystallog. sect. A 50(), 1994
Brünger, 1992
Accurate bond and angle parameters for X-ray protein-structure refinement
Engh, Acta Crystallog. sect. A 47(), 1991
Engh, Acta Crystallog. sect. A 47(), 1991
Crystallography & NMR system: A new software suite for macromolecular structure determination.
Brunger AT, Adams PD, Clore GM, DeLano WL, Gros P, Grosse-Kunstleve RW, Jiang JS, Kuszewski J, Nilges M, Pannu NS, Read RJ, Rice LM, Simonson T, Warren GL., Acta Crystallogr. D Biol. Crystallogr. 54(Pt 5), 1998
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Brunger AT, Adams PD, Clore GM, DeLano WL, Gros P, Grosse-Kunstleve RW, Jiang JS, Kuszewski J, Nilges M, Pannu NS, Read RJ, Rice LM, Simonson T, Warren GL., Acta Crystallogr. D Biol. Crystallogr. 54(Pt 5), 1998
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Improved methods for building protein models in electron density maps and the location of errors in these models.
Jones TA, Zou JY, Cowan SW, Kjeldgaard M., Acta Crystallogr., A, Found. Crystallogr. 47 ( Pt 2)(), 1991
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Jones TA, Zou JY, Cowan SW, Kjeldgaard M., Acta Crystallogr., A, Found. Crystallogr. 47 ( Pt 2)(), 1991
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AUTHOR UNKNOWN, 0
The CCP4 suite: programs for protein crystallography.
Collaborative Computational Project, Number 4., Acta Crystallogr. D Biol. Crystallogr. 50(Pt 5), 1994
PMID: 15299374
Collaborative Computational Project, Number 4., Acta Crystallogr. D Biol. Crystallogr. 50(Pt 5), 1994
PMID: 15299374
PROCHECK: a program to check the stereochemical quality of protein structures.
Laskowski RA, MacArthur MW, Moss DS, Thornton JM., J Appl Crystallogr 26(2), 1993
PMID: c6802
Laskowski RA, MacArthur MW, Moss DS, Thornton JM., J Appl Crystallogr 26(2), 1993
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