Comparative sequence analysis of Solanum and Arabidopsis in a hot spot for pathogen resistance on potato chromosome V reveals a patchwork of conserved and rapidly evolving genome segments
Ballvora A, Joecker A, Viehöver P, Ishihara H, Paal J, Meksem K, Bruggmann R, Schoof H, Weisshaar B, Gebhardt C (2007)
BMC Genomics 8(1): 112.
Zeitschriftenaufsatz
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Autor*in
Ballvora, Agim;
Joecker, Anika;
Viehöver, PriscaUniBi;
Ishihara, Hirofumi;
Paal, Juergen;
Meksem, Khalid;
Bruggmann, Remy;
Schoof, Heiko;
Weisshaar, BerndUniBi 
;
Gebhardt, Christiane
;
Gebhardt, ChristianeEinrichtung
Abstract / Bemerkung
Background: Quantitative phenotypic variation of agronomic characters in crop plants is controlled by environmental
and genetic factors (quantitative trait loci = QTL). To understand the molecular basis of such QTL, the identification of
the underlying genes is of primary interest and DNA sequence analysis of the genomic regions harboring QTL is a
prerequisite for that. QTL mapping in potato (Solanum tuberosum) has identified a region on chromosome V tagged by
DNA markers GP21 and GP179, which contains a number of important QTL, among others QTL for resistance to late
blight caused by the oomycete Phytophthora infestans and to root cyst nematodes.
Results: To obtain genomic sequence for the targeted region on chromosome V, two local BAC (bacterial artificial
chromosome) contigs were constructed and sequenced, which corresponded to parts of the homologous chromosomes
of the diploid, heterozygous genotype P6/210. Two contiguous sequences of 417,445 and 202,781 base pairs were
assembled and annotated. Gene-by-gene co-linearity was disrupted by non-allelic insertions of retrotransposon elements,
stretches of diverged intergenic sequences, differences in gene content and gene order. The latter was caused by
inversion of a 70 kbp genomic fragment. These features were also found in comparison to orthologous sequence contigs
from three homeologous chromosomes of Solanum demissum, a wild tuber bearing species. Functional annotation of the
sequence identified 48 putative open reading frames (ORF) in one contig and 22 in the other, with an average of one
ORF every 9 kbp. Ten ORFs were classified as resistance-gene-like, 11 as F-box-containing genes, 13 as transposable
elements and three as transcription factors. Comparing potato to Arabidopsis thaliana annotated proteins revealed five
micro-syntenic blocks of three to seven ORFs with A. thaliana chromosomes 1, 3 and 5.
Conclusion: Comparative sequence analysis revealed highly conserved collinear regions that flank regions showing high
variability and tandem duplicated genes. Sequence annotation revealed that the majority of the ORFs were members of
multiple gene families. Comparing potato to Arabidopsis thaliana annotated proteins suggested fragmented structural
conservation between these distantly related plant species
Erscheinungsjahr
2007
Zeitschriftentitel
BMC Genomics
Band
8
Ausgabe
1
Art.-Nr.
112
ISSN
1471-2164
Page URI
https://pub.uni-bielefeld.de/record/1593770
Zitieren
Ballvora A, Joecker A, Viehöver P, et al. Comparative sequence analysis of Solanum and Arabidopsis in a hot spot for pathogen resistance on potato chromosome V reveals a patchwork of conserved and rapidly evolving genome segments. BMC Genomics. 2007;8(1): 112.
Ballvora, A., Joecker, A., Viehöver, P., Ishihara, H., Paal, J., Meksem, K., Bruggmann, R., et al. (2007). Comparative sequence analysis of Solanum and Arabidopsis in a hot spot for pathogen resistance on potato chromosome V reveals a patchwork of conserved and rapidly evolving genome segments. BMC Genomics, 8(1), 112. https://doi.org/10.1186/1471-2164-8-112
Ballvora, Agim, Joecker, Anika, Viehöver, Prisca, Ishihara, Hirofumi, Paal, Juergen, Meksem, Khalid, Bruggmann, Remy, Schoof, Heiko, Weisshaar, Bernd, and Gebhardt, Christiane. 2007. “Comparative sequence analysis of Solanum and Arabidopsis in a hot spot for pathogen resistance on potato chromosome V reveals a patchwork of conserved and rapidly evolving genome segments”. BMC Genomics 8 (1): 112.
Ballvora, A., Joecker, A., Viehöver, P., Ishihara, H., Paal, J., Meksem, K., Bruggmann, R., Schoof, H., Weisshaar, B., and Gebhardt, C. (2007). Comparative sequence analysis of Solanum and Arabidopsis in a hot spot for pathogen resistance on potato chromosome V reveals a patchwork of conserved and rapidly evolving genome segments. BMC Genomics 8:112.
Ballvora, A., et al., 2007. Comparative sequence analysis of Solanum and Arabidopsis in a hot spot for pathogen resistance on potato chromosome V reveals a patchwork of conserved and rapidly evolving genome segments. BMC Genomics, 8(1): 112.
A. Ballvora, et al., “Comparative sequence analysis of Solanum and Arabidopsis in a hot spot for pathogen resistance on potato chromosome V reveals a patchwork of conserved and rapidly evolving genome segments”, BMC Genomics, vol. 8, 2007, : 112.
Ballvora, A., Joecker, A., Viehöver, P., Ishihara, H., Paal, J., Meksem, K., Bruggmann, R., Schoof, H., Weisshaar, B., Gebhardt, C.: Comparative sequence analysis of Solanum and Arabidopsis in a hot spot for pathogen resistance on potato chromosome V reveals a patchwork of conserved and rapidly evolving genome segments. BMC Genomics. 8, : 112 (2007).
Ballvora, Agim, Joecker, Anika, Viehöver, Prisca, Ishihara, Hirofumi, Paal, Juergen, Meksem, Khalid, Bruggmann, Remy, Schoof, Heiko, Weisshaar, Bernd, and Gebhardt, Christiane. “Comparative sequence analysis of Solanum and Arabidopsis in a hot spot for pathogen resistance on potato chromosome V reveals a patchwork of conserved and rapidly evolving genome segments”. BMC Genomics 8.1 (2007): 112.
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2 Einträge gefunden, die diesen Artikel zitieren
UNIPROT
82 Einträge gefunden, die diesen Artikel zitieren von denen 10 angezeigt werden
Zinc-finger homeodomain protein 11 (UNIPROT: Q9SEZ1)
Organism: Arabidopsis thaliana
Download in FASTA format
Organism: Arabidopsis thaliana
Download in FASTA format
Putative regulator of chromosome condensation RCC1 (UNIPROT: A4UV43)
Organism: Solanum tuberosum
Download in FASTA format
Organism: Solanum tuberosum
Download in FASTA format
Putative disease resistance protein (UNIPROT: A4UV51)
Organism: Solanum tuberosum
Download in FASTA format
Organism: Solanum tuberosum
Download in FASTA format
Putative NAC domain-containing protein 94 (UNIPROT: Q9FIW5)
Organism: Arabidopsis thaliana
Download in FASTA format
Organism: Arabidopsis thaliana
Download in FASTA format
Putative uncharacterized protein (UNIPROT: A4UV13)
Organism: Solanum tuberosum
Download in FASTA format
Organism: Solanum tuberosum
Download in FASTA format
Putative CAAX amino terminal protease (UNIPROT: A4UV19)
Organism: Solanum tuberosum
Download in FASTA format
Organism: Solanum tuberosum
Download in FASTA format
Putative disease resistance protein (UNIPROT: A4UV53)
Organism: Solanum tuberosum
Download in FASTA format
Organism: Solanum tuberosum
Download in FASTA format
F-box domain-containing protein (UNIPROT: A4UV31)
Organism: Solanum tuberosum
Download in FASTA format
Organism: Solanum tuberosum
Download in FASTA format
60S ribosomal protein L34-2 (UNIPROT: Q9FE65)
Organism: Arabidopsis thaliana
Download in FASTA format
Organism: Arabidopsis thaliana
Download in FASTA format
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Kreike CM, Koning JRAde, Vinke JH, Ooijen JWvan, Stiekema WJ., Theor. Appl. Genet. 88(6/7), 1994
PMID: IND20435328
Mapping of the cyst nematode resistance locus Gpa2 in potato using a strategy based on comigrating AFLP markers.
Rouppe van der Voort J, Wolters P, Folkertsma R, Hutten R, Zandvoort Pvan, Vinke H, Kanyuka K, Bendahmane A, Jacobsen E, Janssen R., Theor. Appl. Genet. 95(5/6), 1997
PMID: IND21234359
Rouppe van der Voort J, Wolters P, Folkertsma R, Hutten R, Zandvoort Pvan, Vinke H, Kanyuka K, Bendahmane A, Jacobsen E, Janssen R., Theor. Appl. Genet. 95(5/6), 1997
PMID: IND21234359
Two additive QTLs conferring broad-spectrum resistance in potato to Globodera pallida are localized on resistance gene clusters.
Rouppe van der Voort J, Vossen Evander, Bakker E, Overmars H, Zandvoort Pvan, Hutten R, Klein Lankhorst R, Bakker J., Theor. Appl. Genet. 101(7), 2000
PMID: IND22089108
Rouppe van der Voort J, Vossen Evander, Bakker E, Overmars H, Zandvoort Pvan, Hutten R, Klein Lankhorst R, Bakker J., Theor. Appl. Genet. 101(7), 2000
PMID: IND22089108
Single nucleotide polymorphism (SNP) genotyping as basis for developing a PCR-based marker highly diagnostic for potato varieties with high resistance to Globodera pallida pathotype Pa2/3
Sattarzadeh A, Achenbach U, Lubeck J, Strahwald J, Tacke E, Hofferbert HR, Rothsteyn T, Gebhardt C., Mol. Breed. 18(4), 2006
PMID: IND43849621
Sattarzadeh A, Achenbach U, Lubeck J, Strahwald J, Tacke E, Hofferbert HR, Rothsteyn T, Gebhardt C., Mol. Breed. 18(4), 2006
PMID: IND43849621
Analysis of quantitative trait loci (QTLs) and quantitative trait alleles (QTAs) for potato tuber yield and starch content.
Schafer-Pregl R, Ritter E, Concilio L, Hesselbach J, Lovatti L, Walkemeier B, Thelen H, Salamini F, Gebhardt C., Theor. Appl. Genet. 97(5/6), 1998
PMID: IND21974303
Schafer-Pregl R, Ritter E, Concilio L, Hesselbach J, Lovatti L, Walkemeier B, Thelen H, Salamini F, Gebhardt C., Theor. Appl. Genet. 97(5/6), 1998
PMID: IND21974303
Cold sweetening in diploid potato: mapping quantitative trait loci and candidate genes.
Menendez CM, Ritter E, Schafer-Pregl R, Walkemeier B, Kalde A, Salamini F, Gebhardt C., Genetics 162(3), 2002
PMID: 12454085
Menendez CM, Ritter E, Schafer-Pregl R, Walkemeier B, Kalde A, Salamini F, Gebhardt C., Genetics 162(3), 2002
PMID: 12454085
Agrobacterium transient expression system as a tool for the isolation of disease resistance genes: application to the Rx2 locus in potato.
Bendahmane A, Querci M, Kanyuka K, Baulcombe DC., Plant J. 21(1), 2000
PMID: 10652152
Bendahmane A, Querci M, Kanyuka K, Baulcombe DC., Plant J. 21(1), 2000
PMID: 10652152
The R1 gene for potato resistance to late blight (Phytophthora infestans) belongs to the leucine zipper/NBS/LRR class of plant resistance genes.
Ballvora A, Ercolano MR, Weiss J, Meksem K, Bormann CA, Oberhagemann P, Salamini F, Gebhardt C., Plant J. 30(3), 2002
PMID: 12000683
Ballvora A, Ercolano MR, Weiss J, Meksem K, Bormann CA, Oberhagemann P, Salamini F, Gebhardt C., Plant J. 30(3), 2002
PMID: 12000683
Host-microbe interactions: shaping the evolution of the plant immune response.
Chisholm ST, Coaker G, Day B, Staskawicz BJ., Cell 124(4), 2006
PMID: 16497589
Chisholm ST, Coaker G, Day B, Staskawicz BJ., Cell 124(4), 2006
PMID: 16497589
Potato breeding. Problems and perspectives
AUTHOR UNKNOWN, 1986
AUTHOR UNKNOWN, 1986
The R1 resistance gene cluster contains three groups of independently evolving, type I R1 homologues and shows substantial structural variation among haplotypes of Solanum demissum.
Kuang H, Wei F, Marano MR, Wirtz U, Wang X, Liu J, Shum WP, Zaborsky J, Tallon LJ, Rensink W, Lobst S, Zhang P, Tornqvist CE, Tek A, Bamberg J, Helgeson J, Fry W, You F, Luo MC, Jiang J, Robin Buell C, Baker B., Plant J. 44(1), 2005
PMID: 16167894
Kuang H, Wei F, Marano MR, Wirtz U, Wang X, Liu J, Shum WP, Zaborsky J, Tallon LJ, Rensink W, Lobst S, Zhang P, Tornqvist CE, Tek A, Bamberg J, Helgeson J, Fry W, You F, Luo MC, Jiang J, Robin Buell C, Baker B., Plant J. 44(1), 2005
PMID: 16167894
The genetic complexity of fungal resistance genes in plants
AUTHOR UNKNOWN, 1993
AUTHOR UNKNOWN, 1993
Assessing genetic potential in germplasm collections of crop plants by marker-trait association: a case study for potatoes with quantitative variation of resistance to late blight and maturity type.
Gebhardt C, Ballvora A, Walkemeier B, Oberhagemann P, Schuler K., Mol. Breed. 13(1), 2004
PMID: IND43615890
Gebhardt C, Ballvora A, Walkemeier B, Oberhagemann P, Schuler K., Mol. Breed. 13(1), 2004
PMID: IND43615890
To clone or not to clone plant QTLs: present and future challenges.
Salvi S, Tuberosa R., Trends Plant Sci. 10(6), 2005
PMID: 15949764
Salvi S, Tuberosa R., Trends Plant Sci. 10(6), 2005
PMID: 15949764
Intraspecific violation of genetic colinearity and its implications in maize.
Fu H, Dooner HK., Proc. Natl. Acad. Sci. U.S.A. 99(14), 2002
PMID: 12060715
Fu H, Dooner HK., Proc. Natl. Acad. Sci. U.S.A. 99(14), 2002
PMID: 12060715
Evolution of DNA sequence nonhomologies among maize inbreds.
Brunner S, Fengler K, Morgante M, Tingey S, Rafalski A., Plant Cell 17(2), 2005
PMID: 15659640
Brunner S, Fengler K, Morgante M, Tingey S, Rafalski A., Plant Cell 17(2), 2005
PMID: 15659640
The nematode-resistance gene, Mi-1, is associated with an inverted chromosomal segment in susceptible compared to resistant tomato.
Seah S, Yaghoobi J, Rossi M, Gleason CA, Williamson VM., Theor. Appl. Genet. 108(8), 2004
PMID: 14963654
Seah S, Yaghoobi J, Rossi M, Gleason CA, Williamson VM., Theor. Appl. Genet. 108(8), 2004
PMID: 14963654
Localization by restriction fragment length polymorphism mapping in potato of a major dominant gene conferring resistance to the potato cyst nematode Globodera rostochiensis.
Barone A, Ritter E, Schachtschabel U, Debener T, Salamini F, Gebhardt C., Mol. Gen. Genet. 224(2), 1990
PMID: 1980523
Barone A, Ritter E, Schachtschabel U, Debener T, Salamini F, Gebhardt C., Mol. Gen. Genet. 224(2), 1990
PMID: 1980523
Recombination around the Tm2a and Mi resistance genes in different crosses of Lycopersicon peruvianum.
Ganal MW, Tanksley SD., Theor. Appl. Genet. 92(1), 1996
PMID: IND20505005
Ganal MW, Tanksley SD., Theor. Appl. Genet. 92(1), 1996
PMID: IND20505005
Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process
AUTHOR UNKNOWN, 1998
AUTHOR UNKNOWN, 1998
Sequence and analysis of the tomato JOINTLESS locus.
Mao L, Begum D, Goff SA, Wing RA., Plant Physiol. 126(3), 2001
PMID: 11457984
Mao L, Begum D, Goff SA, Wing RA., Plant Physiol. 126(3), 2001
PMID: 11457984
Comparative sequence analysis reveals extensive microcolinearity in the lateral suppressor regions of the tomato, Arabidopsis, and Capsella genomes.
Rossberg M, Theres K, Acarkan A, Herrero R, Schmitt T, Schumacher K, Schmitz G, Schmidt R., Plant Cell 13(4), 2001
PMID: 11283350
Rossberg M, Theres K, Acarkan A, Herrero R, Schmitt T, Schumacher K, Schmitz G, Schmidt R., Plant Cell 13(4), 2001
PMID: 11283350
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana.
Arabidopsis Genome Initiative., Nature 408(6814), 2000
PMID: 11130711
Arabidopsis Genome Initiative., Nature 408(6814), 2000
PMID: 11130711
Sequence, annotation, and analysis of synteny between rice chromosome 3 and diverged species
AUTHOR UNKNOWN, 2006
AUTHOR UNKNOWN, 2006
A contiguous 60 kb genomic stretch from barley reveals molecular evidence for gene islands in a monocot genome.
Panstruga R, Buschges R, Piffanelli P, Schulze-Lefert P., Nucleic Acids Res. 26(4), 1998
PMID: 9461468
Panstruga R, Buschges R, Piffanelli P, Schulze-Lefert P., Nucleic Acids Res. 26(4), 1998
PMID: 9461468
Resistance gene complexes: evolution and utilization.
Hulbert SH, Webb CA, Smith SM, Sun Q., Annu Rev Phytopathol 39(), 2001
PMID: 11701867
Hulbert SH, Webb CA, Smith SM, Sun Q., Annu Rev Phytopathol 39(), 2001
PMID: 11701867
The Arabidopsis F-box protein TIR1 is an auxin receptor.
Kepinski S, Leyser O., Nature 435(7041), 2005
PMID: 15917798
Kepinski S, Leyser O., Nature 435(7041), 2005
PMID: 15917798
Regulators of cell death in disease resistance.
Shirasu K, Schulze-Lefert P., Plant Mol. Biol. 44(3), 2000
PMID: 11199395
Shirasu K, Schulze-Lefert P., Plant Mol. Biol. 44(3), 2000
PMID: 11199395
Plant immunity: the origami of receptor activation.
Schulze-Lefert P., Curr. Biol. 14(1), 2004
PMID: 14711430
Schulze-Lefert P., Curr. Biol. 14(1), 2004
PMID: 14711430
Exploring plant genomes by RNA-induced gene silencing.
Waterhouse PM, Helliwell CA., Nat. Rev. Genet. 4(1), 2003
PMID: 12509751
Waterhouse PM, Helliwell CA., Nat. Rev. Genet. 4(1), 2003
PMID: 12509751
Comparison of genes among cereals.
Ware D, Stein L., Curr. Opin. Plant Biol. 6(2), 2003
PMID: 12667867
Ware D, Stein L., Curr. Opin. Plant Biol. 6(2), 2003
PMID: 12667867
The genetic colinearity of rice and other cereals on the basis of genomic sequence analysis.
Bennetzen JL, Ma J., Curr. Opin. Plant Biol. 6(2), 2003
PMID: 12667868
Bennetzen JL, Ma J., Curr. Opin. Plant Biol. 6(2), 2003
PMID: 12667868
Comparing sequenced segments of the tomato and Arabidopsis genomes: large-scale duplication followed by selective gene loss creates a network of synteny.
Ku HM, Vision T, Liu J, Tanksley SD., Proc. Natl. Acad. Sci. U.S.A. 97(16), 2000
PMID: 10908680
Ku HM, Vision T, Liu J, Tanksley SD., Proc. Natl. Acad. Sci. U.S.A. 97(16), 2000
PMID: 10908680
Plant genome archaeology: evidence for conserved ancestral chromosome segments in dicotyledonous plant species.
Dominguez I, Graziano E, Gebhardt C, Barakat A, Berry S, Arus P, Delseny M, Barnes S., Plant Biotechnol. J. 1(2), 2003
PMID: 17147746
Dominguez I, Graziano E, Gebhardt C, Barakat A, Berry S, Arus P, Delseny M, Barnes S., Plant Biotechnol. J. 1(2), 2003
PMID: 17147746
Construction and characterization of a human bacterial artificial chromosome library.
Kim UJ, Birren BW, Slepak T, Mancino V, Boysen C, Kang HL, Simon MI, Shizuya H., Genomics 34(2), 1996
PMID: 8661051
Kim UJ, Birren BW, Slepak T, Mancino V, Boysen C, Kang HL, Simon MI, Shizuya H., Genomics 34(2), 1996
PMID: 8661051
Two large-insert soybean genomic libraries constructed in a binary vector: applications in chromosome walking and genome wide physical mapping.
Meksem K, Zobrist K, Ruben E, Hyten D, Quanzhou T, Zhang HB, Lightfoot DA., Theor. Appl. Genet. 101(5/6), 2000
PMID: IND22081417
Meksem K, Zobrist K, Ruben E, Hyten D, Quanzhou T, Zhang HB, Lightfoot DA., Theor. Appl. Genet. 101(5/6), 2000
PMID: IND22081417
EMBOSS: the European Molecular Biology Open Software Suite.
Rice P, Longden I, Bleasby A., Trends Genet. 16(6), 2000
PMID: 10827456
Rice P, Longden I, Bleasby A., Trends Genet. 16(6), 2000
PMID: 10827456
A dot-matrix program with dynamic threshold control suited for genomic DNA and protein sequence analysis.
Sonnhammer EL, Durbin R., Gene 167(1-2), 1995
PMID: 8566757
Sonnhammer EL, Durbin R., Gene 167(1-2), 1995
PMID: 8566757
GeneMark.hmm: new solutions for gene finding.
Lukashin AV, Borodovsky M., Nucleic Acids Res. 26(4), 1998
PMID: 9461475
Lukashin AV, Borodovsky M., Nucleic Acids Res. 26(4), 1998
PMID: 9461475
Ab initio gene finding in Drosophila genomic DNA.
Salamov AA, Solovyev VV., Genome Res. 10(4), 2000
PMID: 10779491
Salamov AA, Solovyev VV., Genome Res. 10(4), 2000
PMID: 10779491
Engineering a software tool for gene structure prediction in higher organisms
AUTHOR UNKNOWN, 2005
AUTHOR UNKNOWN, 2005
Apollo: a sequence annotation editor.
Lewis SE, Searle SM, Harris N, Gibson M, Lyer V, Richter J, Wiel C, Bayraktaroglu L, Birney E, Crosby MA, Kaminker JS, Matthews BB, Prochnik SE, Smithy CD, Tupy JL, Rubin GM, Misra S, Mungall CJ, Clamp ME., Genome Biol. 3(12), 2002
PMID: 12537571
Lewis SE, Searle SM, Harris N, Gibson M, Lyer V, Richter J, Wiel C, Bayraktaroglu L, Birney E, Crosby MA, Kaminker JS, Matthews BB, Prochnik SE, Smithy CD, Tupy JL, Rubin GM, Misra S, Mungall CJ, Clamp ME., Genome Biol. 3(12), 2002
PMID: 12537571
The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000.
Bairoch A, Apweiler R., Nucleic Acids Res. 28(1), 2000
PMID: 10592178
Bairoch A, Apweiler R., Nucleic Acids Res. 28(1), 2000
PMID: 10592178
InterPro--an integrated documentation resource for protein families, domains and functional sites.
Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Biswas M, Bucher P, Cerutti L, Corpet F, Croning MD, Durbin R, Falquet L, Fleischmann W, Gouzy J, Hermjakob H, Hulo N, Jonassen I, Kahn D, Kanapin A, Karavidopoulou Y, Lopez R, Marx B, Mulder NJ, Oinn TM, Pagni M, Servant F, Sigrist CJ, Zdobnov EM; InterPro Consortium., Bioinformatics 16(12), 2000
PMID: 11159333
Apweiler R, Attwood TK, Bairoch A, Bateman A, Birney E, Biswas M, Bucher P, Cerutti L, Corpet F, Croning MD, Durbin R, Falquet L, Fleischmann W, Gouzy J, Hermjakob H, Hulo N, Jonassen I, Kahn D, Kanapin A, Karavidopoulou Y, Lopez R, Marx B, Mulder NJ, Oinn TM, Pagni M, Servant F, Sigrist CJ, Zdobnov EM; InterPro Consortium., Bioinformatics 16(12), 2000
PMID: 11159333
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ., Nucleic Acids Res. 25(17), 1997
PMID: 9254694
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ., Nucleic Acids Res. 25(17), 1997
PMID: 9254694
InterProScan--an integration platform for the signature-recognition methods in InterPro.
Zdobnov EM, Apweiler R., Bioinformatics 17(9), 2001
PMID: 11590104
Zdobnov EM, Apweiler R., Bioinformatics 17(9), 2001
PMID: 11590104
Automatic clustering of orthologs and in-paralogs from pairwise species comparisons.
Remm M, Storm CE, Sonnhammer EL., J. Mol. Biol. 314(5), 2001
PMID: 11743721
Remm M, Storm CE, Sonnhammer EL., J. Mol. Biol. 314(5), 2001
PMID: 11743721
GABI Primary Database
AUTHOR UNKNOWN, 0
AUTHOR UNKNOWN, 0
The Arabidopsis Information Resource
AUTHOR UNKNOWN, 0
AUTHOR UNKNOWN, 0
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