Fluorescence Quenching by Photoinduced Electron Transfer: A Reporter for Conformational Dynamics of Macromolecules
Doose S, Neuweiler H, Sauer M (2009)
ChemPhysChem 10(9-10): 1389-1398.
Zeitschriftenaufsatz
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Autor*in
Doose, Sören;
Neuweiler, Hannes;
Sauer, MarkusUniBi
Einrichtung
Abstract / Bemerkung
Photoinduced electron transfer (PET) between organic fluorophores and suitable electron donating moieties, for example, the amino acid tryptophan or the nucleobase guanine, can quench fluorescence upon van der Waals contact and thus report-on molecular contact. PET-quenching has been used as reporter for monitoring conformational dynamics in polypeptides, proteins, and oligonucleotides. Whereas dynamic quenching transiently influences quantum yield and fluorescence life-time of the fluorophore, static quenching in pi-stacked complexes efficiently suppresses fluorescence emission over time scales longer than the fluorescence lifetime. Static quenching therefore provides sufficient contrast to be observed at the single-molecule level. Here, we review complex formation and static quenching of different fluorophores by various molecular compounds, discuss applications as reporter system for macromolecular dynamics, and give illustrating examples.
Stichworte
molecular diagnostics;
fluorescence spectroscopy;
biopolymer conformational dynamics;
photoinduced electron transfer;
protein folding
Erscheinungsjahr
2009
Zeitschriftentitel
ChemPhysChem
Band
10
Ausgabe
9-10
Seite(n)
1389-1398
ISSN
1439-4235
eISSN
1439-7641
Page URI
https://pub.uni-bielefeld.de/record/1591754
Zitieren
Doose S, Neuweiler H, Sauer M. Fluorescence Quenching by Photoinduced Electron Transfer: A Reporter for Conformational Dynamics of Macromolecules. ChemPhysChem. 2009;10(9-10):1389-1398.
Doose, S., Neuweiler, H., & Sauer, M. (2009). Fluorescence Quenching by Photoinduced Electron Transfer: A Reporter for Conformational Dynamics of Macromolecules. ChemPhysChem, 10(9-10), 1389-1398. https://doi.org/10.1002/cphc.200900238
Doose, Sören, Neuweiler, Hannes, and Sauer, Markus. 2009. “Fluorescence Quenching by Photoinduced Electron Transfer: A Reporter for Conformational Dynamics of Macromolecules”. ChemPhysChem 10 (9-10): 1389-1398.
Doose, S., Neuweiler, H., and Sauer, M. (2009). Fluorescence Quenching by Photoinduced Electron Transfer: A Reporter for Conformational Dynamics of Macromolecules. ChemPhysChem 10, 1389-1398.
Doose, S., Neuweiler, H., & Sauer, M., 2009. Fluorescence Quenching by Photoinduced Electron Transfer: A Reporter for Conformational Dynamics of Macromolecules. ChemPhysChem, 10(9-10), p 1389-1398.
S. Doose, H. Neuweiler, and M. Sauer, “Fluorescence Quenching by Photoinduced Electron Transfer: A Reporter for Conformational Dynamics of Macromolecules”, ChemPhysChem, vol. 10, 2009, pp. 1389-1398.
Doose, S., Neuweiler, H., Sauer, M.: Fluorescence Quenching by Photoinduced Electron Transfer: A Reporter for Conformational Dynamics of Macromolecules. ChemPhysChem. 10, 1389-1398 (2009).
Doose, Sören, Neuweiler, Hannes, and Sauer, Markus. “Fluorescence Quenching by Photoinduced Electron Transfer: A Reporter for Conformational Dynamics of Macromolecules”. ChemPhysChem 10.9-10 (2009): 1389-1398.
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Alexiev U, Farrens DL., Biochim Biophys Acta 1837(5), 2014
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Fabrication of magnetically separable fluorescent terbium-based MOF nanospheres for highly selective trace-level detection of TNT.
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Synthesis, photophysical properties and incorporation of a highly emissive and environment-sensitive uridine analogue based on the Lucifer chromophore.
Tanpure AA, Srivatsan SG., Chembiochem 15(9), 2014
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Quantitatively mapping cellular viscosity with detailed organelle information via a designed PET fluorescent probe.
Liu T, Liu X, Spring DR, Qian X, Cui J, Xu Z., Sci Rep 4(), 2014
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A base-modified PNA-graphene oxide platform as a turn-on fluorescence sensor for the detection of human telomeric repeats.
Sabale PM, George JT, Srivatsan SG., Nanoscale 6(18), 2014
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Smart dual-functional warhead for folate receptor-specific activatable imaging and photodynamic therapy.
Kim J, Tung CH, Choi Y., Chem Commun (Camb) 50(73), 2014
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Kim J, Tung CH, Choi Y., Chem Commun (Camb) 50(73), 2014
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Fluorescence quenching of (dimethylamino)naphthalene dyes Badan and Prodan by tryptophan in cytochromes P450 and micelles.
Pospíšil P, Luxem KE, Ener M, Sýkora J, Kocábová J, Gray HB, Vlček A, Hof M., J Phys Chem B 118(34), 2014
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A starting point for fluorescence-based single-molecule measurements in biomolecular research.
Gust A, Zander A, Gietl A, Holzmeister P, Schulz S, Lalkens B, Tinnefeld P, Grohmann D., Molecules 19(10), 2014
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Distance mapping in proteins using fluorescence spectroscopy: tyrosine, like tryptophan, quenches bimane fluorescence in a distance-dependent manner.
Jones Brunette AM, Farrens DL., Biochemistry 53(40), 2014
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Jones Brunette AM, Farrens DL., Biochemistry 53(40), 2014
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High-throughput development of a hybrid-type fluorescent glutamate sensor for analysis of synaptic transmission.
Takikawa K, Asanuma D, Namiki S, Sakamoto H, Ariyoshi T, Kimpara N, Hirose K., Angew Chem Int Ed Engl 53(49), 2014
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Takikawa K, Asanuma D, Namiki S, Sakamoto H, Ariyoshi T, Kimpara N, Hirose K., Angew Chem Int Ed Engl 53(49), 2014
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Lateral opening of the bacterial translocon on ribosome binding and signal peptide insertion.
Ge Y, Draycheva A, Bornemann T, Rodnina MV, Wintermeyer W., Nat Commun 5(), 2014
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Ge Y, Draycheva A, Bornemann T, Rodnina MV, Wintermeyer W., Nat Commun 5(), 2014
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Unravelling the conformations of di-(perylene bisimide acrylate) by combining time-resolved fluorescence-anisotropy experiments and molecular modelling.
Spreitler F, Sommer M, Hollfelder M, Thelakkat M, Gekle S, Köhler J., Phys Chem Chem Phys 16(47), 2014
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Seven novel probe systems for real-time PCR provide absolute single-base discrimination, higher signaling, and generic components.
Murray JL, Hu P, Shafer DA., J Mol Diagn 16(6), 2014
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Silicon photon-counting avalanche diodes for single-molecule fluorescence spectroscopy.
Michalet X, Ingargiola A, Colyer RA, Scalia G, Weiss S, Maccagnani P, Gulinatti A, Rech I, Ghioni M., IEEE J Sel Top Quantum Electron 20(6), 2014
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Hofmann H, Hillger F, Delley C, Hoffmann A, Pfeil SH, Nettels D, Lipman EA, Schuler B., Biophys J 107(12), 2014
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What precision-protein-tuning and nano-resolved single molecule sciences can do for each other.
Milles S, Lemke EA., Bioessays 35(1), 2013
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Steger K, Bollmann S, Noé F, Doose S., Phys Chem Chem Phys 15(25), 2013
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A new fluorescent probe for distinguishing Zn2+ and Cd2+ with high sensitivity and selectivity.
Tan Y, Gao J, Yu J, Wang Z, Cui Y, Yang Y, Qian G., Dalton Trans 42(32), 2013
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Thioamide quenching of fluorescent probes through photoinduced electron transfer: mechanistic studies and applications.
Goldberg JM, Batjargal S, Chen BS, Petersson EJ., J Am Chem Soc 135(49), 2013
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Efficient synthesis and in vivo incorporation of acridon-2-ylalanine, a fluorescent amino acid for lifetime and Förster resonance energy transfer/luminescence resonance energy transfer studies.
Speight LC, Muthusamy AK, Goldberg JM, Warner JB, Wissner RF, Willi TS, Woodman BF, Mehl RA, Petersson EJ., J Am Chem Soc 135(50), 2013
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Characterization of the 6-methyl isoxanthopterin (6-MI) base analog dimer, a spectroscopic probe for monitoring guanine base conformations at specific sites in nucleic acids.
Datta K, Johnson NP, Villani G, Marcus AH, von Hippel PH., Nucleic Acids Res 40(3), 2012
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Label-free fluorescence detection of the depurination activity of ribosome inactivating protein toxins.
Tanpure AA, Patheja P, Srivatsan SG., Chem Commun (Camb) 48(4), 2012
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Controlling conformations in alternating dialkylsilylene-spaced donor-acceptor copolymers by a cooperative Thorpe-Ingold effect and polymer folding.
Chen CH, Huang YC, Liao WC, Lim TS, Liu KL, Chen IC, Luh TY., Chemistry 18(1), 2012
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Fluorogenic protein labeling through photoinduced electron transfer-based BL-tag technology.
Sadhu KK, Mizukami S, Lanam CR, Kikuchi K., Chem Asian J 7(2), 2012
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Spectroscopic studies of protein folding: linear and nonlinear methods.
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Live-cell super-resolution imaging with synthetic fluorophores.
van de Linde S, Heilemann M, Sauer M., Annu Rev Phys Chem 63(), 2012
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Probing the interaction between fluorophores and DNA nucleotides by fluorescence correlation spectroscopy and fluorescence quenching.
Ranjit S, Levitus M., Photochem Photobiol 88(4), 2012
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SulA inhibits assembly of FtsZ by a simple sequestration mechanism.
Chen Y, Milam SL, Erickson HP., Biochemistry 51(14), 2012
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Minimalist probes for studying protein dynamics: thioamide quenching of selectively excitable fluorescent amino acids.
Goldberg JM, Speight LC, Fegley MW, Petersson EJ., J Am Chem Soc 134(14), 2012
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Relative transmembrane segment rearrangements during BK channel activation resolved by structurally assigned fluorophore-quencher pairing.
Pantazis A, Olcese R., J Gen Physiol 140(2), 2012
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Genetic incorporation of a metal-chelating amino acid as a probe for protein electron transfer.
Liu X, Li J, Dong J, Hu C, Gong W, Wang J., Angew Chem Int Ed Engl 51(41), 2012
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Photoinduced formation of reversible dye radicals and their impact on super-resolution imaging.
van de Linde S, Krstić I, Prisner T, Doose S, Heilemann M, Sauer M., Photochem Photobiol Sci 10(4), 2011
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Mittelstaet J, Konevega AL, Rodnina MV., J Biol Chem 286(10), 2011
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Unfolding dynamics of cytochrome c revealed by single-molecule and ensemble-averaged spectroscopy.
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Ferreon AC, Deniz AA., Biochim Biophys Acta 1814(8), 2011
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Dynamical fingerprints for probing individual relaxation processes in biomolecular dynamics with simulations and kinetic experiments.
Noé F, Doose S, Daidone I, Löllmann M, Sauer M, Chodera JD, Smith JC., Proc Natl Acad Sci U S A 108(12), 2011
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Photoinduced electron transfer and fluorophore motion as a probe of the conformational dynamics of membrane proteins: application to the influenza a M2 proton channel.
Rogers JM, Polishchuk AL, Guo L, Wang J, DeGrado WF, Gai F., Langmuir 27(7), 2011
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Chen Y, Erickson HP., Biochemistry 50(21), 2011
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Dimer formation of organic fluorophores reports on biomolecular dynamics under denaturing conditions.
Bollmann S, Löllmann M, Sauer M, Doose S., Phys Chem Chem Phys 13(28), 2011
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Protonation/deprotonation effects on the stability of the Trp-cage miniprotein.
Jimenez-Cruz CA, Makhatadze GI, Garcia AE., Phys Chem Chem Phys 13(38), 2011
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Determination of copper(II) ion concentration by lifetime measurements of green fluorescent protein.
Hötzer B, Ivanov R, Altmeier S, Kappl R, Jung G., J Fluoresc 21(6), 2011
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Spectroscopic determination of Critical Micelle Concentration in aqueous and non-aqueous media using a non-invasive method.
Anand U, Jash C, Mukherjee S., J Colloid Interface Sci 364(2), 2011
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Probing the charge-transfer dynamics in DNA at the single-molecule level.
Kawai K, Matsutani E, Maruyama A, Majima T., J Am Chem Soc 133(39), 2011
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Conformational flexibility of glycosylated peptides.
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A microenvironment-sensitive fluorescent pyrimidine ribonucleoside analogue: synthesis, enzymatic incorporation, and fluorescence detection of a DNA abasic site.
Tanpure AA, Srivatsan SG., Chemistry 17(45), 2011
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Detecting intramolecular conformational dynamics of single molecules in short distance range with subnanometer sensitivity.
Zhou R, Kunzelmann S, Webb MR, Ha T., Nano Lett 11(12), 2011
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A fluorescence turn-on sensor for iodide based on a thymine-Hg(II)-thymine complex.
Ma B, Zeng F, Zheng F, Wu S., Chemistry 17(52), 2011
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Fluorescent probes and delivery methods for single-molecule experiments.
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Distinguishing between protein dynamics and dye photophysics in single-molecule FRET experiments.
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The Effect of dye-dye interactions on the spatial resolution of single-molecule FRET measurements in nucleic acids.
Di Fiori N, Meller A., Biophys J 98(10), 2010
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Mechanisms of quenching of Alexa fluorophores by natural amino acids.
Chen H, Ahsan SS, Santiago-Berrios MB, Abruña HD, Webb WW., J Am Chem Soc 132(21), 2010
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Structure-switching biosensors: inspired by Nature.
Vallée-Bélisle A, Plaxco KW., Curr Opin Struct Biol 20(4), 2010
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Single-molecule spectroscopy of protein folding in a chaperonin cage.
Hofmann H, Hillger F, Pfeil SH, Hoffmann A, Streich D, Haenni D, Nettels D, Lipman EA, Schuler B., Proc Natl Acad Sci U S A 107(26), 2010
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Make them blink: probes for super-resolution microscopy.
Vogelsang J, Steinhauer C, Forthmann C, Stein IH, Person-Skegro B, Cordes T, Tinnefeld P., Chemphyschem 11(12), 2010
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