A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii

Grewe F, Viehöver P, Weisshaar B, Knoop V (2009)
Nucleic Acids Research 37(15): 5093-5104.

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Grewe, Felix; Viehöver, PriscaUniBi; Weisshaar, BerndUniBi ; Knoop, Volker
Nucleic Acids Research
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Grewe F, Viehöver P, Weisshaar B, Knoop V. A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii. Nucleic Acids Research. 2009;37(15):5093-5104.
Grewe, F., Viehöver, P., Weisshaar, B., & Knoop, V. (2009). A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii. Nucleic Acids Research, 37(15), 5093-5104. https://doi.org/10.1093/nar/gkp532
Grewe, Felix, Viehöver, Prisca, Weisshaar, Bernd, and Knoop, Volker. 2009. “A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii”. Nucleic Acids Research 37 (15): 5093-5104.
Grewe, F., Viehöver, P., Weisshaar, B., and Knoop, V. (2009). A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii. Nucleic Acids Research 37, 5093-5104.
Grewe, F., et al., 2009. A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii. Nucleic Acids Research, 37(15), p 5093-5104.
F. Grewe, et al., “A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii”, Nucleic Acids Research, vol. 37, 2009, pp. 5093-5104.
Grewe, F., Viehöver, P., Weisshaar, B., Knoop, V.: A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii. Nucleic Acids Research. 37, 5093-5104 (2009).
Grewe, Felix, Viehöver, Prisca, Weisshaar, Bernd, and Knoop, Volker. “A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii”. Nucleic Acids Research 37.15 (2009): 5093-5104.

64 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Giant group I intron in a mitochondrial genome is removed by RNA back-splicing.
Chi SI, Dahl M, Emblem Å, Johansen SD., BMC Mol Biol 20(1), 2019
PMID: 31153363
Gene loss and genome rearrangement in the plastids of five Hemiparasites in the family Orobanchaceae.
Frailey DC, Chaluvadi SR, Vaughn JN, Coatney CG, Bennetzen JL., BMC Plant Biol 18(1), 2018
PMID: 29409454
Towards a comprehensive picture of C-to-U RNA editing sites in angiosperm mitochondria.
Edera AA, Gandini CL, Sanchez-Puerta MV., Plant Mol Biol 97(3), 2018
PMID: 29761268
A Single-Target Mitochondrial RNA Editing Factor of Funaria hygrometrica Can Fully Reconstitute RNA Editing at Two Sites in Physcomitrella patens.
Schallenberg-Rüdinger M, Oldenkott B, Hiss M, Trinh PL, Knoop V, Rensing SA., Plant Cell Physiol 58(3), 2017
PMID: 28394399
Functional divergence and origin of the DAG-like gene family in plants.
Luo M, Cai M, Zhang J, Li Y, Zhang R, Song W, Zhang K, Xiao H, Yue B, Zheng Y, Zhao Y, Zhao J, Qiu F., Sci Rep 7(1), 2017
PMID: 28720816
Semi‑random mutagenesis profile of BCR‑ABL during imatinib resistance acquirement in K562 cells.
Dong Y, Gao X, Zhao Y, Wei M, Xu L, Yang G, Liu L., Mol Med Rep 16(6), 2017
PMID: 29152650
The RNA Editing Factor SlORRM4 Is Required for Normal Fruit Ripening in Tomato.
Yang Y, Zhu G, Li R, Yan S, Fu D, Zhu B, Tian H, Luo Y, Zhu H., Plant Physiol 175(4), 2017
PMID: 29061908
Ginkgo and Welwitschia Mitogenomes Reveal Extreme Contrasts in Gymnosperm Mitochondrial Evolution.
Guo W, Grewe F, Fan W, Young GJ, Knoop V, Palmer JD, Mower JP., Mol Biol Evol 33(6), 2016
PMID: 26831941
Group II Intron-Mediated Trans-Splicing in the Gene-Rich Mitochondrial Genome of an Enigmatic Eukaryote, Diphylleia rotans.
Kamikawa R, Shiratori T, Ishida K, Miyashita H, Roger AJ., Genome Biol Evol 8(2), 2016
PMID: 26833505
Organellar phylogenomics of an emerging model system: Sphagnum (peatmoss).
Jonathan Shaw A, Devos N, Liu Y, Cox CJ, Goffinet B, Flatberg KI, Shaw B., Ann Bot 118(2), 2016
PMID: 27268484
Localized Retroprocessing as a Model of Intron Loss in the Plant Mitochondrial Genome.
Cuenca A, Ross TG, Graham SW, Barrett CF, Davis JI, Seberg O, Petersen G., Genome Biol Evol 8(7), 2016
PMID: 27435795
Horizontal gene transfer of chlamydial-like tRNA genes into early vascular plant mitochondria.
Knie N, Polsakiewicz M, Knoop V., Mol Biol Evol 32(3), 2015
PMID: 25415968
Horsetails are the sister group to all other monilophytes and Marattiales are sister to leptosporangiate ferns.
Knie N, Fischer S, Grewe F, Polsakiewicz M, Knoop V., Mol Phylogenet Evol 90(), 2015
PMID: 25999055
RNA editing in plant mitochondria—connecting RNA target sequences and acting proteins.
Takenaka M, Verbitskiy D, Zehrmann A, Härtel B, Bayer-Császár E, Glass F, Brennicke A., Mitochondrion 19 Pt B(), 2014
PMID: 24732437
RNA editing in plants and its evolution.
Takenaka M, Zehrmann A, Verbitskiy D, Härtel B, Brennicke A., Annu Rev Genet 47(), 2013
PMID: 24274753
Evolution of mitochondrial gene content: loss of genes, tRNAs and introns between Gossypium harknessii and other plants
Lei B, Li S, Liu G, Chen Z, Su A, Li P, Li Z, Hua J., Plant Syst Evol 299(10), 2013
PMID: IND500707610
Exclusive conservation of mitochondrial group II intron nad4i548 among liverworts and its use for phylogenetic studies in this ancient plant clade.
Volkmar U, Groth-Malonek M, Heinrichs J, Muhle H, Polsakiewicz M, Knoop V., Plant Biol (Stuttg) 14(2), 2012
PMID: 21973214
Structure of transfer RNAs: similarity and variability.
Giegé R, Jühling F, Pütz J, Stadler P, Sauter C, Florentz C., Wiley Interdiscip Rev RNA 3(1), 2012
PMID: 21957054
Rapid evolution of enormous, multichromosomal genomes in flowering plant mitochondria with exceptionally high mutation rates.
Sloan DB, Alverson AJ, Chuckalovcak JP, Wu M, McCauley DE, Palmer JD, Taylor DR., PLoS Biol 10(1), 2012
PMID: 22272183
Unscrambling genetic information at the RNA level.
Moreira S, Breton S, Burger G., Wiley Interdiscip Rev RNA 3(2), 2012
PMID: 22275292
Systematically fragmented genes in a multipartite mitochondrial genome.
Vlcek C, Marande W, Teijeiro S, Lukes J, Burger G., Nucleic Acids Res 39(3), 2011
PMID: 20935050
A unique transcriptome: 1782 positions of RNA editing alter 1406 codon identities in mitochondrial mRNAs of the lycophyte Isoetes engelmannii.
Grewe F, Herres S, Viehöver P, Polsakiewicz M, Weisshaar B, Knoop V., Nucleic Acids Res 39(7), 2011
PMID: 21138958
Lasda EL, Blumenthal T., Wiley Interdiscip Rev RNA 2(3), 2011
PMID: 21957027
Organellar RNA editing.
Chateigner-Boutin AL, Small I., Wiley Interdiscip Rev RNA 2(4), 2011
PMID: 21957039
The evolution of the plastid chromosome in land plants: gene content, gene order, gene function.
Wicke S, Schneeweiss GM, dePamphilis CW, Müller KF, Quandt D., Plant Mol Biol 76(3-5), 2011
PMID: 21424877
RNA editing restores critical domains of a group I intron in fern mitochondria.
Bégu D, Castandet B, Araya A., Curr Genet 57(5), 2011
PMID: 21701904
Origins and recombination of the bacterial-sized multichromosomal mitochondrial genome of cucumber.
Alverson AJ, Rice DW, Dickinson S, Barry K, Palmer JD., Plant Cell 23(7), 2011
PMID: 21742987
Introducing the plant RNA editing prediction and analysis computer tool PREPACT and an update on RNA editing site nomenclature.
Lenz H, Rüdinger M, Volkmar U, Fischer S, Herres S, Grewe F, Knoop V., Curr Genet 56(2), 2010
PMID: 20041252
Impact of genomic environment on mitochondrial rps7 mRNA features in grasses.
Byers E, Rueger J, Bonen L., Mol Genet Genomics 284(3), 2010
PMID: 20652591
Extensive loss of translational genes in the structurally dynamic mitochondrial genome of the angiosperm Silene latifolia.
Sloan DB, Alverson AJ, Storchová H, Palmer JD, Taylor DR., BMC Evol Biol 10(), 2010
PMID: 20831793

69 References

Daten bereitgestellt von Europe PubMed Central.

Mitochondrial evolution.
Gray MW, Burger G, Lang BF., Science 283(5407), 1999
PMID: 10066161
Key transitions in animal evolution: a mitochondrial DNA perspective
Lavrov DV., 2007
Mitochondria of protists.
Gray MW, Lang BF, Burger G., Annu. Rev. Genet. 38(), 2004
PMID: 15568984
An ancestral mitochondrial DNA resembling a eubacterial genome in miniature.
Lang BF, Burger G, O'Kelly CJ, Cedergren R, Golding GB, Lemieux C, Sankoff D, Turmel M, Gray MW., Nature 387(6632), 1997
PMID: 9168110
The deepest divergences in land plants inferred from phylogenomic evidence.
Qiu YL, Li L, Wang B, Chen Z, Knoop V, Groth-Malonek M, Dombrovska O, Lee J, Kent L, Rest J, Estabrook GF, Hendry TA, Taylor DW, Testa CM, Ambros M, Crandall-Stotler B, Duff RJ, Stech M, Frey W, Quandt D, Davis CC., Proc. Natl. Acad. Sci. U.S.A. 103(42), 2006
PMID: 17030812
copia-, gypsy- and LINE-like retrotransposon fragments in the mitochondrial genome of Arabidopsis thaliana.
Knoop V, Unseld M, Marienfeld J, Brandt P, Sunkel S, Ullrich H, Brennicke A., Genetics 142(2), 1996
PMID: 8852855
Fungal origin by horizontal transfer of a plant mitochondrial group I intron in the chimeric CoxI gene of Peperomia.
Vaughn JC, Mason MT, Sper-Whitis GL, Kuhlman P, Palmer JD., J. Mol. Evol. 41(5), 1995
PMID: 7490770
Widespread horizontal transfer of mitochondrial genes in flowering plants.
Bergthorsson U, Adams KL, Thomason B, Palmer JD., Nature 424(6945), 2003
PMID: 12853958
Horizontal gene transfer in plants.
Richardson AO, Palmer JD., J. Exp. Bot. 58(1), 2006
PMID: 17030541
Organization and variation of angiosperm mitochondrial genome
Kubo T, Mikami T., 2007
The process of RNA editing in plant mitochondria.
Takenaka M, Verbitskiy D, van der Merwe JA, Zehrmann A, Brennicke A., Mitochondrion 8(1), 2008
PMID: 18326075
RNA editing in plant mitochondria and chloroplasts.
Maier RM, Zeltz P, Kossel H, Bonnard G, Gualberto JM, Grienenberger JM., Plant Mol. Biol. 32(1-2), 1996
PMID: 8980487
Plant mitochondrial RNA editing.
Steinhauser S, Beckert S, Capesius I, Malek O, Knoop V., J. Mol. Evol. 48(3), 1999
PMID: 10093219
Gene organization deduced from the complete sequence of liverwort Marchantia polymorpha mitochondrial DNA. A primitive form of plant mitochondrial genome.
Oda K, Yamato K, Ohta E, Nakamura Y, Takemura M, Nozato N, Akashi K, Kanegae T, Ogura Y, Kohchi T., J. Mol. Biol. 223(1), 1992
PMID: 1731062
The mitochondrial genome of the moss Physcomitrella patens sheds new light on mitochondrial evolution in land plants.
Terasawa K, Odahara M, Kabeya Y, Kikugawa T, Sekine Y, Fujiwara M, Sato N., Mol. Biol. Evol. 24(3), 2006
PMID: 17175527
The mitochondrial genome of Arabidopsis thaliana contains 57 genes in 366,924 nucleotides.
Unseld M, Marienfeld JR, Brandt P, Brennicke A., Nat. Genet. 15(1), 1997
PMID: 8988169
The complete nucleotide sequence and multipartite organization of the tobacco mitochondrial genome: comparative analysis of mitochondrial genomes in higher plants
Sugiyama Y, Watase Y, Nagase M, Makita N, Yagura S, Hirai A, Sugiura M., 2005
Structural dynamics of cereal mitochondrial genomes as revealed by complete nucleotide sequencing of the wheat mitochondrial genome.
Ogihara Y, Yamazaki Y, Murai K, Kanno A, Terachi T, Shiina T, Miyashita N, Nasuda S, Nakamura C, Mori N, Takumi S, Murata M, Futo S, Tsunewaki K., Nucleic Acids Res. 33(19), 2005
PMID: 16260473
Plant mitochondrial recombination surveillance requires unusual RecA and MutS homologs.
Shedge V, Arrieta-Montiel M, Christensen AC, Mackenzie SA., Plant Cell 19(4), 2007
PMID: 17468263
MEGA: a biologist-centric software for evolutionary analysis of DNA and protein sequences.
Kumar S, Nei M, Dudley J, Tamura K., Brief. Bioinformatics 9(4), 2008
PMID: 18417537
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs.
Altschul SF, Madden TL, Schaffer AA, Zhang J, Zhang Z, Miller W, Lipman DJ., Nucleic Acids Res. 25(17), 1997
PMID: 9254694
Transcript end mapping and analysis of RNA editing in plant mitochondria
Kempken F, Bolle N, Forner J, Binder S., 2008

Sambrook J, Russell DW., 2001
Mitochondrial introns: a critical view.
Lang BF, Laforest MJ, Burger G., Trends Genet. 23(3), 2007
PMID: 17280737
Group I and group II introns.
Saldanha R, Mohr G, Belfort M, Lambowitz AM., FASEB J. 7(1), 1993
PMID: 8422962
Group I introns in the liverwort mitochondrial genome: the gene coding for subunit 1 of cytochrome oxidase shares five intron positions with its fungal counterparts.
Ohta E, Oda K, Yamato K, Nakamura Y, Takemura M, Nozato N, Akashi K, Ohyama K, Michel F., Nucleic Acids Res. 21(5), 1993
PMID: 7681945
Horsetails and ferns are a monophyletic group and the closest living relatives to seed plants.
Pryer KM, Schneider H, Smith AR, Cranfill R, Wolf PG, Hunt JS, Sipes SD., Nature 409(6820), 2001
PMID: 11214320
Phylogeny and evolution of charophytic algae and land plants
Qiu YL., 2008
Plant mitochondria, more unique than ever.
Rasmusson AG, Handa H, Moller IM., Mitochondrion 8(1), 2007
PMID: 18023263
Transfer of chloroplast genomic DNA to mitochondrial genome occurred at least 300 MYA.
Wang D, Wu YW, Shih AC, Wu CS, Wang YN, Chaw SM., Mol. Biol. Evol. 24(9), 2007
PMID: 17609537
Cytochrome c biogenesis in mitochondria.
Giege P, Grienenberger JM, Bonnard G., Mitochondrion 8(1), 2007
PMID: 18033741
Order within a mosaic distribution of mitochondrial c-type cytochrome biogenesis systems?
Allen JW, Jackson AP, Rigden DJ, Willis AC, Ferguson SJ, Ginger ML., FEBS J. 275(10), 2008
PMID: 18393999
Evidence for in vivo trans splicing of pre-mRNAs in tobacco chloroplasts.
Koller B, Fromm H, Galun E, Edelman M., Cell 48(1), 1987
PMID: 3791410
Mutant phenotypes support a trans-splicing mechanism for the expression of the tripartite psaA gene in the C. reinhardtii chloroplast.
Choquet Y, Goldschmidt-Clermont M, Girard-Bascou J, Kuck U, Bennoun P, Rochaix JD., Cell 52(6), 1988
PMID: 3280139
Trans splicing integrates an exon of 22 nucleotides into the nad5 mRNA in higher plant mitochondria.
Knoop V, Schuster W, Wissinger B, Brennicke A., EMBO J. 10(11), 1991
PMID: 1915303
A discontinuous hammerhead ribozyme embedded in a mammalian messenger RNA.
Martick M, Horan LH, Noller HF, Scott WG., Nature 454(7206), 2008
PMID: 18615019
Mitochondrial DNA as a genomic jigsaw puzzle.
Marande W, Burger G., Science 318(5849), 2007
PMID: 17947575
Nanoarchaeum equitans creates functional tRNAs from separate genes for their 5'- and 3'-halves.
Randau L, Munch R, Hohn MJ, Jahn D, Soll D., Nature 433(7025), 2005
PMID: 15690044
Transfer RNA genes in pieces.
Randau L, Soll D., EMBO Rep. 9(7), 2008
PMID: 18552771
Permuted tRNA genes expressed via a circular RNA intermediate in Cyanidioschyzon merolae.
Soma A, Onodera A, Sugahara J, Kanai A, Yachie N, Tomita M, Kawamura F, Sekine Y., Science 318(5849), 2007
PMID: 17947580
Editing corrects mispairing in the acceptor stem of bean and potato mitochondrial phenylalanine transfer RNAs.
Marechal-Drouard L, Ramamonjisoa D, Cosset A, Weil JH, Dietrich A., Nucleic Acids Res. 21(21), 1993
PMID: 8177739
Editing of transfer RNAs in Acanthamoeba castellanii mitochondria.
Lonergan KM, Gray MW., Science 259(5096), 1993
PMID: 8430334
A novel type of RNA editing occurs in the mitochondrial tRNAs of the centipede Lithobius forficatus.
Lavrov DV, Brown WM, Boore JL., Proc. Natl. Acad. Sci. U.S.A. 97(25), 2000
PMID: 11095730
Insertional editing of mitochondrial tRNAs of Physarum polycephalum and Didymium nigripes.
Antes T, Costandy H, Mahendran R, Spottswood M, Miller D., Mol. Cell. Biol. 18(12), 1998
PMID: 9819437
Mitochondrial genomes: anything goes.
Burger G, Gray MW, Lang BF., Trends Genet. 19(12), 2003
PMID: 14642752

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