A method to unmix multiple fluorophores in microscopy images with minimal a priori information

Schlachter S, Schwedler S, Esposito A, Kaminski Schierle GS, Moggridge GD, Kaminski CF (2009)
OPTICS EXPRESS 17(25): 22747-22760.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
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Autor*in
Schlachter, S.; Schwedler, StefanieUniBi ; Esposito, A.; Kaminski Schierle, G. S.; Moggridge, G. D.; Kaminski, C. F.
Abstract / Bemerkung
The ability to quantify the fluorescence signals from multiply labeled biological samples is highly desirable in the life sciences but often difficult, because of spectral overlap between fluorescent species and the presence of autofluorescence. Several so called unmixing algorithms have been developed to address this problem. Here, we present a novel algorithm that combines measurements of lifetime and spectrum to achieve unmixing without a priori information on the spectral properties of the fluorophore labels. The only assumption made is that the lifetimes of the fluorophores differ. Our method combines global analysis for a measurement of lifetime distributions with singular value decomposition to recover individual fluorescence spectra. We demonstrate the technique on simulated datasets and subsequently by an experiment on a biological sample. The method is computationally efficient and straightforward to implement. Applications range from histopathology of complex and multiply labelled samples to functional imaging in live cells. (C) 2009 Optical Society of America
Erscheinungsjahr
2009
Zeitschriftentitel
OPTICS EXPRESS
Band
17
Ausgabe
25
Seite(n)
22747-22760
ISSN
1094-4087
eISSN
1094-4087
Page URI
https://pub.uni-bielefeld.de/record/1589283

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Schlachter S, Schwedler S, Esposito A, Kaminski Schierle GS, Moggridge GD, Kaminski CF. A method to unmix multiple fluorophores in microscopy images with minimal a priori information. OPTICS EXPRESS. 2009;17(25):22747-22760.
Schlachter, S., Schwedler, S., Esposito, A., Kaminski Schierle, G. S., Moggridge, G. D., & Kaminski, C. F. (2009). A method to unmix multiple fluorophores in microscopy images with minimal a priori information. OPTICS EXPRESS, 17(25), 22747-22760. https://doi.org/10.1364/OE.17.022747
Schlachter, S., Schwedler, Stefanie, Esposito, A., Kaminski Schierle, G. S., Moggridge, G. D., and Kaminski, C. F. 2009. “A method to unmix multiple fluorophores in microscopy images with minimal a priori information”. OPTICS EXPRESS 17 (25): 22747-22760.
Schlachter, S., Schwedler, S., Esposito, A., Kaminski Schierle, G. S., Moggridge, G. D., and Kaminski, C. F. (2009). A method to unmix multiple fluorophores in microscopy images with minimal a priori information. OPTICS EXPRESS 17, 22747-22760.
Schlachter, S., et al., 2009. A method to unmix multiple fluorophores in microscopy images with minimal a priori information. OPTICS EXPRESS, 17(25), p 22747-22760.
S. Schlachter, et al., “A method to unmix multiple fluorophores in microscopy images with minimal a priori information”, OPTICS EXPRESS, vol. 17, 2009, pp. 22747-22760.
Schlachter, S., Schwedler, S., Esposito, A., Kaminski Schierle, G.S., Moggridge, G.D., Kaminski, C.F.: A method to unmix multiple fluorophores in microscopy images with minimal a priori information. OPTICS EXPRESS. 17, 22747-22760 (2009).
Schlachter, S., Schwedler, Stefanie, Esposito, A., Kaminski Schierle, G. S., Moggridge, G. D., and Kaminski, C. F. “A method to unmix multiple fluorophores in microscopy images with minimal a priori information”. OPTICS EXPRESS 17.25 (2009): 22747-22760.

14 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Line-scanning hyperspectral imaging based on structured illumination optical sectioning.
Hsu YJ, Chen CC, Huang CH, Yeh CH, Liu LY, Chen SY., Biomed Opt Express 8(6), 2017
PMID: 28663922
Fast and simple spectral FLIM for biochemical and medical imaging.
Popleteeva M, Haas KT, Stoppa D, Pancheri L, Gasparini L, Kaminski CF, Cassidy LD, Venkitaraman AR, Esposito A., Opt Express 23(18), 2015
PMID: 26368450
Attenuation-corrected fluorescence spectra unmixing for spectroscopy and microscopy.
Ikoma H, Heshmat B, Wetzstein G, Raskar R., Opt Express 22(16), 2014
PMID: 25321030
A fully constrained optimization method for time-resolved multispectral fluorescence lifetime imaging microscopy data unmixing.
Gutierrez-Navarro O, Campos-Delgado DU, Arce-Santana E, Mendez MO, Jo JA., IEEE Trans Biomed Eng 60(6), 2013
PMID: 23358941
High speed multispectral fluorescence lifetime imaging.
Fereidouni F, Reitsma K, Gerritsen HC., Opt Express 21(10), 2013
PMID: 23736399
Application of non-negative matrix factorization to multispectral FLIM data analysis.
Pande P, Applegate BE, Jo JA., Biomed Opt Express 3(9), 2012
PMID: 23024917
HomoFRET fluorescence anisotropy imaging as a tool to study molecular self-assembly in live cells.
Chan FT, Kaminski CF, Kaminski Schierle GS., Chemphyschem 12(3), 2011
PMID: 21344590
Design and application of a confocal microscope for spectrally resolved anisotropy imaging.
Esposito A, Bader AN, Schlachter SC, van den Heuvel DJ, Schierle GS, Venkitaraman AR, Kaminski CF, Gerritsen HC., Opt Express 19(3), 2011
PMID: 21369074
A FRET sensor for non-invasive imaging of amyloid formation in vivo.
Kaminski Schierle GS, Bertoncini CW, Chan FTS, van der Goot AT, Schwedler S, Skepper J, Schlachter S, van Ham T, Esposito A, Kumita JR, Nollen EAA, Dobson CM, Kaminski CF., Chemphyschem 12(3), 2011
PMID: 21308945
An adaptive filter for studying the life cycle of optical rogue waves.
Liu C, Rees EJ, Laurila T, Jian S, Kaminski CF., Opt Express 18(25), 2010
PMID: 21164960
Two-photon spectral imaging with high temporal and spectral resolution.
Im KB, Kang MS, Kim J, Bestvater F, Seghiri Z, Wachsmuth M, Grailhe R., Opt Express 18(26), 2010
PMID: 21196967

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