A method to unmix multiple fluorophores in microscopy images with minimal a priori information
Schlachter S, Schwedler S, Esposito A, Kaminski Schierle GS, Moggridge GD, Kaminski CF (2009)
OPTICS EXPRESS 17(25): 22747-22760.
Zeitschriftenaufsatz
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Autor*in
Schlachter, S.;
Schwedler, StefanieUniBi ;
Esposito, A.;
Kaminski Schierle, G. S.;
Moggridge, G. D.;
Kaminski, C. F.
Abstract / Bemerkung
The ability to quantify the fluorescence signals from multiply labeled biological samples is highly desirable in the life sciences but often difficult, because of spectral overlap between fluorescent species and the presence of autofluorescence. Several so called unmixing algorithms have been developed to address this problem. Here, we present a novel algorithm that combines measurements of lifetime and spectrum to achieve unmixing without a priori information on the spectral properties of the fluorophore labels. The only assumption made is that the lifetimes of the fluorophores differ. Our method combines global analysis for a measurement of lifetime distributions with singular value decomposition to recover individual fluorescence spectra. We demonstrate the technique on simulated datasets and subsequently by an experiment on a biological sample. The method is computationally efficient and straightforward to implement. Applications range from histopathology of complex and multiply labelled samples to functional imaging in live cells. (C) 2009 Optical Society of America
Erscheinungsjahr
2009
Zeitschriftentitel
OPTICS EXPRESS
Band
17
Ausgabe
25
Seite(n)
22747-22760
ISSN
1094-4087
eISSN
1094-4087
Page URI
https://pub.uni-bielefeld.de/record/1589283
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Schlachter S, Schwedler S, Esposito A, Kaminski Schierle GS, Moggridge GD, Kaminski CF. A method to unmix multiple fluorophores in microscopy images with minimal a priori information. OPTICS EXPRESS. 2009;17(25):22747-22760.
Schlachter, S., Schwedler, S., Esposito, A., Kaminski Schierle, G. S., Moggridge, G. D., & Kaminski, C. F. (2009). A method to unmix multiple fluorophores in microscopy images with minimal a priori information. OPTICS EXPRESS, 17(25), 22747-22760. https://doi.org/10.1364/OE.17.022747
Schlachter, S., Schwedler, Stefanie, Esposito, A., Kaminski Schierle, G. S., Moggridge, G. D., and Kaminski, C. F. 2009. “A method to unmix multiple fluorophores in microscopy images with minimal a priori information”. OPTICS EXPRESS 17 (25): 22747-22760.
Schlachter, S., Schwedler, S., Esposito, A., Kaminski Schierle, G. S., Moggridge, G. D., and Kaminski, C. F. (2009). A method to unmix multiple fluorophores in microscopy images with minimal a priori information. OPTICS EXPRESS 17, 22747-22760.
Schlachter, S., et al., 2009. A method to unmix multiple fluorophores in microscopy images with minimal a priori information. OPTICS EXPRESS, 17(25), p 22747-22760.
S. Schlachter, et al., “A method to unmix multiple fluorophores in microscopy images with minimal a priori information”, OPTICS EXPRESS, vol. 17, 2009, pp. 22747-22760.
Schlachter, S., Schwedler, S., Esposito, A., Kaminski Schierle, G.S., Moggridge, G.D., Kaminski, C.F.: A method to unmix multiple fluorophores in microscopy images with minimal a priori information. OPTICS EXPRESS. 17, 22747-22760 (2009).
Schlachter, S., Schwedler, Stefanie, Esposito, A., Kaminski Schierle, G. S., Moggridge, G. D., and Kaminski, C. F. “A method to unmix multiple fluorophores in microscopy images with minimal a priori information”. OPTICS EXPRESS 17.25 (2009): 22747-22760.
Daten bereitgestellt von European Bioinformatics Institute (EBI)
14 Zitationen in Europe PMC
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Chen YC, Clegg RM., J Microsc 244(1), 2011
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Chen YC, Clegg RM., J Microsc 244(1), 2011
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