Kinetics, statistics, and energetics of lipid membrane electroporation studied by molecular dynamics simulations
Boeckmann RA, de Groot BL, Kakorin S, Neumann E, Grubmueller H (2008)
BIOPHYSICAL JOURNAL 95(4): 1837-1850.
Zeitschriftenaufsatz
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Autor*in
Boeckmann, Rainer A.;
de Groot, Bert L.;
Kakorin, SergejUniBi;
Neumann, EberhardUniBi;
Grubmueller, Helmut
Abstract / Bemerkung
Membrane electroporation is the method to directly transfer bioactive substances such as drugs and genes into living cells, as well as preceding electrofusion. Although much information on the microscopic mechanism has been obtained both from experiment and simulation, the existence and nature of possible intermediates is still unclear. To elucidate intermediates of electropore formation by direct comparison with measured prepore formation kinetics, we have carried out 49 atomistic electroporation simulations on a palmitoyl-oleoyl-phosphatidylcholine bilayer for electric field strengths between 0.04 and 0.7 V/nm. A statistical theory is developed to facilitate direct comparison of experimental (macroscopic) prepore formation kinetics with the (single event) preporation times derived from the simulations, which also allows us to extract an effective number of lipids involved in each pore formation event. A linear dependency of the activation energy for prepore formation on the applied field is seen, with quantitative agreement between experiment and simulation. The distribution of preporation times suggests a four-state pore formation model. The model involves a first intermediate characterized by a differential tilt of the polar lipid headgroups on both leaflets, and a second intermediate (prepore), where a polar chain across the bilayer is formed by 3-4 lipid headgroups and several water molecules, thereby providing a microscopic explanation for the polarizable volume derived previously from the measured kinetics. An average pore radius of 0.47 +/- 0.15 nm is seen, in favorable agreement with conductance measurements and electrooptical experiments of lipid vesicles.
Erscheinungsjahr
2008
Zeitschriftentitel
BIOPHYSICAL JOURNAL
Band
95
Ausgabe
4
Seite(n)
1837-1850
ISSN
0006-3495
Page URI
https://pub.uni-bielefeld.de/record/1586986
Zitieren
Boeckmann RA, de Groot BL, Kakorin S, Neumann E, Grubmueller H. Kinetics, statistics, and energetics of lipid membrane electroporation studied by molecular dynamics simulations. BIOPHYSICAL JOURNAL. 2008;95(4):1837-1850.
Boeckmann, R. A., de Groot, B. L., Kakorin, S., Neumann, E., & Grubmueller, H. (2008). Kinetics, statistics, and energetics of lipid membrane electroporation studied by molecular dynamics simulations. BIOPHYSICAL JOURNAL, 95(4), 1837-1850. https://doi.org/10.1529/biophysj.108.129437
Boeckmann, Rainer A., de Groot, Bert L., Kakorin, Sergej, Neumann, Eberhard, and Grubmueller, Helmut. 2008. “Kinetics, statistics, and energetics of lipid membrane electroporation studied by molecular dynamics simulations”. BIOPHYSICAL JOURNAL 95 (4): 1837-1850.
Boeckmann, R. A., de Groot, B. L., Kakorin, S., Neumann, E., and Grubmueller, H. (2008). Kinetics, statistics, and energetics of lipid membrane electroporation studied by molecular dynamics simulations. BIOPHYSICAL JOURNAL 95, 1837-1850.
Boeckmann, R.A., et al., 2008. Kinetics, statistics, and energetics of lipid membrane electroporation studied by molecular dynamics simulations. BIOPHYSICAL JOURNAL, 95(4), p 1837-1850.
R.A. Boeckmann, et al., “Kinetics, statistics, and energetics of lipid membrane electroporation studied by molecular dynamics simulations”, BIOPHYSICAL JOURNAL, vol. 95, 2008, pp. 1837-1850.
Boeckmann, R.A., de Groot, B.L., Kakorin, S., Neumann, E., Grubmueller, H.: Kinetics, statistics, and energetics of lipid membrane electroporation studied by molecular dynamics simulations. BIOPHYSICAL JOURNAL. 95, 1837-1850 (2008).
Boeckmann, Rainer A., de Groot, Bert L., Kakorin, Sergej, Neumann, Eberhard, and Grubmueller, Helmut. “Kinetics, statistics, and energetics of lipid membrane electroporation studied by molecular dynamics simulations”. BIOPHYSICAL JOURNAL 95.4 (2008): 1837-1850.
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Belehradek M, Domenge C, Luboinski B, Orlowski S, Belehradek J Jr, Mir LM., Cancer 72(12), 1993
PMID: 7504576
AUTHOR UNKNOWN, 1995
High-efficiency gene transfer into skeletal muscle mediated by electric pulses.
Mir LM, Bureau MF, Gehl J, Rangara R, Rouy D, Caillaud JM, Delaere P, Branellec D, Schwartz B, Scherman D., Proc. Natl. Acad. Sci. U.S.A. 96(8), 1999
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Mir LM, Bureau MF, Gehl J, Rangara R, Rouy D, Caillaud JM, Delaere P, Branellec D, Schwartz B, Scherman D., Proc. Natl. Acad. Sci. U.S.A. 96(8), 1999
PMID: 10200250
Efficient nonviral cutaneous transfection.
Glasspool-Malone J, Somiari S, Drabick JJ, Malone RW., Mol. Ther. 2(2), 2000
PMID: 10947941
Glasspool-Malone J, Somiari S, Drabick JJ, Malone RW., Mol. Ther. 2(2), 2000
PMID: 10947941
Cutaneous transfection and immune responses to intradermal nucleic acid vaccination are significantly enhanced by in vivo electropermeabilization.
Drabick JJ, Glasspool-Malone J, King A, Malone RW., Mol. Ther. 3(2), 2001
PMID: 11237682
Drabick JJ, Glasspool-Malone J, King A, Malone RW., Mol. Ther. 3(2), 2001
PMID: 11237682
mRNA-based electrotransfection of human dendritic cells and induction of cytotoxic T lymphocyte responses against the telomerase catalytic subunit (hTERT).
Saeboe-Larssen S, Fossberg E, Gaudernack G., J. Immunol. Methods 259(1-2), 2002
PMID: 11730854
Saeboe-Larssen S, Fossberg E, Gaudernack G., J. Immunol. Methods 259(1-2), 2002
PMID: 11730854
Efficient genetic modification of murine dendritic cells by electroporation with mRNA.
Van Meirvenne S, Straetman L, Heirman C, Dullaers M, De Greef C, Van Tendeloo V, Thielemans K., Cancer Gene Ther. 9(9), 2002
PMID: 12189529
Van Meirvenne S, Straetman L, Heirman C, Dullaers M, De Greef C, Van Tendeloo V, Thielemans K., Cancer Gene Ther. 9(9), 2002
PMID: 12189529
AUTHOR UNKNOWN, 1979
AUTHOR UNKNOWN, 1980
Electro-insertion of xeno-glycophorin into the red blood cell membrane.
Mouneimne Y, Tosi PF, Gazitt Y, Nicolau C., Biochem. Biophys. Res. Commun. 159(1), 1989
PMID: 2493789
Mouneimne Y, Tosi PF, Gazitt Y, Nicolau C., Biochem. Biophys. Res. Commun. 159(1), 1989
PMID: 2493789
The electrical breakdown of cell and lipid membranes: the similarity of phenomenologies.
Chernomordik LV, Sukharev SI, Popov SV, Pastushenko VF, Sokirko AV, Abidor IG, Chizmadzhev YA., Biochim. Biophys. Acta 902(3), 1987
PMID: 3620466
Chernomordik LV, Sukharev SI, Popov SV, Pastushenko VF, Sokirko AV, Abidor IG, Chizmadzhev YA., Biochim. Biophys. Acta 902(3), 1987
PMID: 3620466
Voltage-induced conductance in human erythrocyte membranes.
Kinosita K Jr, Tsong TY., Biochim. Biophys. Acta 554(2), 1979
PMID: 486454
Kinosita K Jr, Tsong TY., Biochim. Biophys. Acta 554(2), 1979
PMID: 486454
AUTHOR UNKNOWN, 1979
Voltage-induced nonconductive pre-pores and metastable single pores in unmodified planar lipid bilayer.
Melikov KC, Frolov VA, Shcherbakov A, Samsonov AV, Chizmadzhev YA, Chernomordik LV., Biophys. J. 80(4), 2001
PMID: 11259296
Melikov KC, Frolov VA, Shcherbakov A, Samsonov AV, Chizmadzhev YA, Chernomordik LV., Biophys. J. 80(4), 2001
PMID: 11259296
AUTHOR UNKNOWN, 1996
AUTHOR UNKNOWN, 1998
Electric field induced transient pores in phospholipid bilayer vesicles.
Teissie J, Tsong TY., Biochemistry 20(6), 1981
PMID: 6261800
Teissie J, Tsong TY., Biochemistry 20(6), 1981
PMID: 6261800
Nanosecond field alignment of head group and water dipoles in electroporating phospholipid bilayers.
Vernier PT, Ziegler MJ., J Phys Chem B 111(45), 2007
PMID: 17949035
Vernier PT, Ziegler MJ., J Phys Chem B 111(45), 2007
PMID: 17949035
Simulations of transient membrane behavior in cells subjected to a high-intensity ultrashort electric pulse.
Hu Q, Viswanadham S, Joshi RP, Schoenbach KH, Beebe SJ, Blackmore PF., Phys Rev E Stat Nonlin Soft Matter Phys 71(3 Pt 1), 2005
PMID: 15903466
Hu Q, Viswanadham S, Joshi RP, Schoenbach KH, Beebe SJ, Blackmore PF., Phys Rev E Stat Nonlin Soft Matter Phys 71(3 Pt 1), 2005
PMID: 15903466
Simulations of nanopore formation and phosphatidylserine externalization in lipid membranes subjected to a high-intensity, ultrashort electric pulse.
Hu Q, Joshi RP, Schoenbach KH., Phys Rev E Stat Nonlin Soft Matter Phys 72(3 Pt 1), 2005
PMID: 16241477
Hu Q, Joshi RP, Schoenbach KH., Phys Rev E Stat Nonlin Soft Matter Phys 72(3 Pt 1), 2005
PMID: 16241477
Pore formation coupled to ion transport through lipid membranes as induced by transmembrane ionic charge imbalance: atomistic molecular dynamics study.
Gurtovenko AA, Vattulainen I., J. Am. Chem. Soc. 127(50), 2005
PMID: 16351063
Gurtovenko AA, Vattulainen I., J. Am. Chem. Soc. 127(50), 2005
PMID: 16351063
Molecular mechanism for lipid flip-flops.
Gurtovenko AA, Vattulainen I., J Phys Chem B 111(48), 2007
PMID: 17988118
Gurtovenko AA, Vattulainen I., J Phys Chem B 111(48), 2007
PMID: 17988118
Ion leakage through transient water pores in protein-free lipid membranes driven by transmembrane ionic charge imbalance.
Gurtovenko AA, Vattulainen I., Biophys. J. 92(6), 2007
PMID: 17208976
Gurtovenko AA, Vattulainen I., Biophys. J. 92(6), 2007
PMID: 17208976
The effects of gramicidin on electroporation of lipid bilayers.
Troiano GC, Stebe KJ, Raphael RM, Tung L., Biophys. J. 76(6), 1999
PMID: 10354439
Troiano GC, Stebe KJ, Raphael RM, Tung L., Biophys. J. 76(6), 1999
PMID: 10354439
Electric field effects on membranes: gramicidin A as a test ground.
Siu SW, Bockmann RA., J. Struct. Biol. 157(3), 2006
PMID: 17116406
Siu SW, Bockmann RA., J. Struct. Biol. 157(3), 2006
PMID: 17116406
Nanopore formation and phosphatidylserine externalization in a phospholipid bilayer at high transmembrane potential.
Vernier PT, Ziegler MJ, Sun Y, Chang WV, Gundersen MA, Tieleman DP., J. Am. Chem. Soc. 128(19), 2006
PMID: 16683772
Vernier PT, Ziegler MJ, Sun Y, Chang WV, Gundersen MA, Tieleman DP., J. Am. Chem. Soc. 128(19), 2006
PMID: 16683772
High electrical field effects on cell membranes.
Pliquett U, Joshi RP, Sridhara V, Schoenbach KH., Bioelectrochemistry 70(2), 2006
PMID: 17123870
Pliquett U, Joshi RP, Sridhara V, Schoenbach KH., Bioelectrochemistry 70(2), 2006
PMID: 17123870
AUTHOR UNKNOWN, 2002
AUTHOR UNKNOWN, 2004
Electro-optics of membrane electroporation in diphenylhexatriene-doped lipid bilayer vesicles.
Kakorin S, Stoylov SP, Neumann E., Biophys. Chem. 58(1-2), 1996
PMID: 8679914
Kakorin S, Stoylov SP, Neumann E., Biophys. Chem. 58(1-2), 1996
PMID: 8679914
Simulation of pore formation in lipid bilayers by mechanical stress and electric fields.
Tieleman DP, Leontiadou H, Mark AE, Marrink SJ., J. Am. Chem. Soc. 125(21), 2003
PMID: 12785774
Tieleman DP, Leontiadou H, Mark AE, Marrink SJ., J. Am. Chem. Soc. 125(21), 2003
PMID: 12785774
Membrane electroporation: a molecular dynamics simulation.
Tarek M., Biophys. J. 88(6), 2005
PMID: 15764667
Tarek M., Biophys. J. 88(6), 2005
PMID: 15764667
Effect of sodium chloride on a lipid bilayer.
Bockmann RA, Hac A, Heimburg T, Grubmuller H., Biophys. J. 85(3), 2003
PMID: 12944279
Bockmann RA, Hac A, Heimburg T, Grubmuller H., Biophys. J. 85(3), 2003
PMID: 12944279
Molecular dynamics simulations of a fluid bilayer of dipalmitoylphosphatidylcholine at full hydration, constant pressure, and constant temperature.
Berger O, Edholm O, Jahnig F., Biophys. J. 72(5), 1997
PMID: 9129804
Berger O, Edholm O, Jahnig F., Biophys. J. 72(5), 1997
PMID: 9129804
AUTHOR UNKNOWN, 1981
Multistep binding of divalent cations to phospholipid bilayers: a molecular dynamics study.
Bockmann RA, Grubmuller H., Angew. Chem. Int. Ed. Engl. 43(8), 2004
PMID: 14966897
Bockmann RA, Grubmuller H., Angew. Chem. Int. Ed. Engl. 43(8), 2004
PMID: 14966897
AUTHOR UNKNOWN, 1995
AUTHOR UNKNOWN, 2001
AUTHOR UNKNOWN, 1997
AUTHOR UNKNOWN, 1992
AUTHOR UNKNOWN, 1993
AUTHOR UNKNOWN, 1986
AUTHOR UNKNOWN, 1990
AUTHOR UNKNOWN, 1984
AUTHOR UNKNOWN, 1983
AUTHOR UNKNOWN, 1951
A molecular dynamics study of the pores formed by Escherichia coli OmpF porin in a fully hydrated palmitoyloleoylphosphatidylcholine bilayer.
Tieleman DP, Berendsen HJ., Biophys. J. 74(6), 1998
PMID: 9635733
Tieleman DP, Berendsen HJ., Biophys. J. 74(6), 1998
PMID: 9635733
AUTHOR UNKNOWN, 1973
AUTHOR UNKNOWN, 1999
Molecular dynamics simulation of a dipalmitoylphosphatidylcholine bilayer with NaCl.
Pandit SA, Bostick D, Berkowitz ML., Biophys. J. 84(6), 2003
PMID: 12770880
Pandit SA, Bostick D, Berkowitz ML., Biophys. J. 84(6), 2003
PMID: 12770880
Membrane electroporation: The absolute rate equation and nanosecond time scale pore creation.
Vasilkoski Z, Esser AT, Gowrishankar TR, Weaver JC., Phys Rev E Stat Nonlin Soft Matter Phys 74(2 Pt 1), 2006
PMID: 17025469
Vasilkoski Z, Esser AT, Gowrishankar TR, Weaver JC., Phys Rev E Stat Nonlin Soft Matter Phys 74(2 Pt 1), 2006
PMID: 17025469
AUTHOR UNKNOWN, 1986
Reversible electrical breakdown of lipid bilayers: formation and evolution of pores.
Glaser RW, Leikin SL, Chernomordik LV, Pastushenko VF, Sokirko AI., Biochim. Biophys. Acta 940(2), 1988
PMID: 2453213
Glaser RW, Leikin SL, Chernomordik LV, Pastushenko VF, Sokirko AI., Biochim. Biophys. Acta 940(2), 1988
PMID: 2453213
Membrane electroporation and electromechanical deformation of vesicles and cells.
Neumann E, Kakorin S, Toensing K., Faraday Discuss. (111), 1998
PMID: 10822604
Neumann E, Kakorin S, Toensing K., Faraday Discuss. (111), 1998
PMID: 10822604
Free energy of a trans-membrane pore calculated from atomistic molecular dynamics simulations.
Wohlert J, den Otter WK, Edholm O, Briels WJ., J Chem Phys 124(15), 2006
PMID: 16674263
Wohlert J, den Otter WK, Edholm O, Briels WJ., J Chem Phys 124(15), 2006
PMID: 16674263
In vivo electroporation using an exponentially enhanced pulse: a new waveform.
Lucas ML, Jaroszeski MJ, Gilbert R, Heller R., DNA Cell Biol. 20(3), 2001
PMID: 11313021
Lucas ML, Jaroszeski MJ, Gilbert R, Heller R., DNA Cell Biol. 20(3), 2001
PMID: 11313021
AUTHOR UNKNOWN, 1998
AUTHOR UNKNOWN, 2000
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