Exploring the nuclear proteome of Medicago truncatula at the switch towards seed filling

Repetto O, Rogniaux H, Firnhaber C, Zuber H, Kuester H, Larre C, Thompson R, Gallardo K (2008)
PLANT JOURNAL 56(3): 398-410.

Zeitschriftenaufsatz | Veröffentlicht | Englisch
 
Download
Es wurden keine Dateien hochgeladen. Nur Publikationsnachweis!
Autor*in
Repetto, Ombretta; Rogniaux, Helene; Firnhaber, Christian; Zuber, Helene; Kuester, Helge; Larre, Colette; Thompson, Richard; Gallardo, Karine
Stichworte
M. truncatula; seed development; nuclear proteome
Erscheinungsjahr
2008
Zeitschriftentitel
PLANT JOURNAL
Band
56
Ausgabe
3
Seite(n)
398-410
ISSN
0960-7412
eISSN
1365-313X
Page URI
https://pub.uni-bielefeld.de/record/1585672

Zitieren

Repetto O, Rogniaux H, Firnhaber C, et al. Exploring the nuclear proteome of Medicago truncatula at the switch towards seed filling. PLANT JOURNAL. 2008;56(3):398-410.
Repetto, O., Rogniaux, H., Firnhaber, C., Zuber, H., Kuester, H., Larre, C., Thompson, R., et al. (2008). Exploring the nuclear proteome of Medicago truncatula at the switch towards seed filling. PLANT JOURNAL, 56(3), 398-410. https://doi.org/10.1111/j.1365-313X.2008.03610.x
Repetto, Ombretta, Rogniaux, Helene, Firnhaber, Christian, Zuber, Helene, Kuester, Helge, Larre, Colette, Thompson, Richard, and Gallardo, Karine. 2008. “Exploring the nuclear proteome of Medicago truncatula at the switch towards seed filling”. PLANT JOURNAL 56 (3): 398-410.
Repetto, O., Rogniaux, H., Firnhaber, C., Zuber, H., Kuester, H., Larre, C., Thompson, R., and Gallardo, K. (2008). Exploring the nuclear proteome of Medicago truncatula at the switch towards seed filling. PLANT JOURNAL 56, 398-410.
Repetto, O., et al., 2008. Exploring the nuclear proteome of Medicago truncatula at the switch towards seed filling. PLANT JOURNAL, 56(3), p 398-410.
O. Repetto, et al., “Exploring the nuclear proteome of Medicago truncatula at the switch towards seed filling”, PLANT JOURNAL, vol. 56, 2008, pp. 398-410.
Repetto, O., Rogniaux, H., Firnhaber, C., Zuber, H., Kuester, H., Larre, C., Thompson, R., Gallardo, K.: Exploring the nuclear proteome of Medicago truncatula at the switch towards seed filling. PLANT JOURNAL. 56, 398-410 (2008).
Repetto, Ombretta, Rogniaux, Helene, Firnhaber, Christian, Zuber, Helene, Kuester, Helge, Larre, Colette, Thompson, Richard, and Gallardo, Karine. “Exploring the nuclear proteome of Medicago truncatula at the switch towards seed filling”. PLANT JOURNAL 56.3 (2008): 398-410.

34 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Late ribosomal protein localization in Arabidopsis thaliana differs to that in Saccharomyces cerevisiae.
Palm D, Streit D, Ruprecht M, Simm S, Scharf C, Schleiff E., FEBS Open Bio 8(9), 2018
PMID: 30186745
UNcleProt (Universal Nuclear Protein database of barley): The first nuclear protein database that distinguishes proteins from different phases of the cell cycle.
Blavet N, Uřinovská J, Jeřábková H, Chamrád I, Vrána J, Lenobel R, Beinhauer J, Šebela M, Doležel J, Petrovská B., Nucleus 8(1), 2017
PMID: 27813701
SUMOylation regulates p27Kip1 stability and localization in response to TGFβ.
Lovisa S, Citro S, Sonego M, Dall'Acqua A, Ranzuglia V, Berton S, Colombatti A, Belletti B, Chiocca S, Schiappacassi M, Baldassarre G., J Mol Cell Biol 8(1), 2016
PMID: 26450989
Legume proteomics: Progress, prospects, and challenges.
Rathi D, Gayen D, Gayali S, Chakraborty S, Chakraborty N., Proteomics 16(2), 2016
PMID: 26563903
Plant nuclear proteomics for unraveling physiological function.
Yin X, Komatsu S., N Biotechnol 33(5 pt b), 2016
PMID: 27004615
Plant Organellar Proteomics in Response to Dehydration: Turning Protein Repertoire into Insights.
Gupta DB, Rai Y, Gayali S, Chakraborty S, Chakraborty N., Front Plant Sci 7(), 2016
PMID: 27148291
The Vigna unguiculata Gene Expression Atlas (VuGEA) from de novo assembly and quantification of RNA-seq data provides insights into seed maturation mechanisms.
Yao S, Jiang C, Huang Z, Torres-Jerez I, Chang J, Zhang H, Udvardi M, Liu R, Verdier J., Plant J 88(2), 2016
PMID: 27448251
Inside a plant nucleus: discovering the proteins.
Petrovská B, Šebela M, Doležel J., J Exp Bot 66(6), 2015
PMID: 25697798
Changes in the nuclear proteome of developing wheat (Triticum aestivum L.) grain.
Bonnot T, Bancel E, Chambon C, Boudet J, Branlard G, Martre P., Front Plant Sci 6(), 2015
PMID: 26579155
Tomato nuclear proteome reveals the involvement of specific E2 ubiquitin-conjugating enzymes in fruit ripening.
Wang Y, Wang W, Cai J, Zhang Y, Qin G, Tian S., Genome Biol 15(12), 2014
PMID: 25464976
Comparative analyses of nuclear proteome: extending its function.
Narula K, Datta A, Chakraborty N, Chakraborty S., Front Plant Sci 4(), 2013
PMID: 23637696
Sub-cellular proteomics of Medicago truncatula.
Lee J, Lei Z, Watson BS, Sumner LW., Front Plant Sci 4(), 2013
PMID: 23641248
Characterisation of the nuclear proteome of a dehydration-sensitive cultivar of chickpea and comparative proteomic analysis with a tolerant cultivar.
Subba P, Kumar R, Gayali S, Shekhar S, Parveen S, Pandey A, Datta A, Chakraborty S, Chakraborty N., Proteomics 13(12-13), 2013
PMID: 23798506
Protocol: Optimised methodology for isolation of nuclei from leaves of species in the Solanaceae and Rosaceae families.
Sikorskaite S, Rajamäki ML, Baniulis D, Stanys V, Valkonen JP., Plant Methods 9(), 2013
PMID: 23886449
Comparative proteomics of dehydration response in the rice nucleus: new insights into the molecular basis of genotype-specific adaptation.
Jaiswal DK, Ray D, Choudhary MK, Subba P, Kumar A, Verma J, Kumar R, Datta A, Chakraborty S, Chakraborty N., Proteomics 13(23-24), 2013
PMID: 24133045
The nuclear proteome of the green alga Chlamydomonas reinhardtii.
Winck FV, Riaño-Pachón DM, Sommer F, Rupprecht J, Mueller-Roeber B., Proteomics 12(1), 2012
PMID: 22065562
Faba bean genomics: current status and future prospects
Alghamdi SS, Migdadi HM, Ammar MH, Paull JG, Siddique KHM., Euphytica 186(3), 2012
PMID: IND44739160
The seed nuclear proteome.
Repetto O, Rogniaux H, Larré C, Thompson R, Gallardo K., Front Plant Sci 3(), 2012
PMID: 23267364
Plant organelle proteomics: collaborating for optimal cell function.
Agrawal GK, Bourguignon J, Rolland N, Ephritikhine G, Ferro M, Jaquinod M, Alexiou KG, Chardot T, Chakraborty N, Jolivet P, Doonan JH, Rakwal R., Mass Spectrom Rev 30(5), 2011
PMID: 21038434
Advances in qualitative and quantitative plant membrane proteomics.
Kota U, Goshe MB., Phytochemistry 72(10), 2011
PMID: 21367437
Model legumes contribute to faba bean breeding
Rispail Nicolas, Kaló Péter, Kiss GyörgyB, Ellis THNoel, Gallardo Karine, Thompson RichardD, Prats Elena, Larrainzar Estibaliz, Ladrera Ruben, González EstherM, Arrese-Igor Cesar, Ferguson BrettJ, Gresshoff PeterM, Rubiales Diego., Field Crops Res 115(3), 2010
PMID: IND44316555
Proteomic analysis of Medicago truncatula root plastids.
Daher Z, Recorbet G, Valot B, Robert F, Balliau T, Potin S, Schoefs B, Dumas-Gaudot E., Proteomics 10(11), 2010
PMID: 20336678
Plant nuclear proteomics--inside the cell maestro.
Erhardt M, Adamska I, Franco OL., FEBS J 277(16), 2010
PMID: 20629746
Fungal proteins in the extra-radical phase of arbuscular mycorrhiza: a shotgun proteomic picture.
Recorbet G, Rogniaux H, Gianinazzi-Pearson V, DumasGaudot E., New Phytol 181(2), 2009
PMID: 19121027
Translating Medicago truncatula genomics to crop legumes.
Young ND, Udvardi M., Curr Opin Plant Biol 12(2), 2009
PMID: 19162532
Post-genomics studies of developmental processes in legume seeds.
Thompson R, Burstin J, Gallardo K., Plant Physiol 151(3), 2009
PMID: 19675147

70 References

Daten bereitgestellt von Europe PubMed Central.

RNA silencing and genome regulation.
Almeida R, Allshire RC., Trends Cell Biol. 15(5), 2005
PMID: 15866029
Directed proteomic analysis of the human nucleolus.
Andersen JS, Lyon CE, Fox AH, Leung AK, Lam YW, Steen H, Mann M, Lamond AI., Curr. Biol. 12(1), 2002
PMID: 11790298
Analysis of the Arabidopsis nuclear proteome and its response to cold stress.
Bae MS, Cho EJ, Choi EY, Park OK., Plant J. 36(5), 2003
PMID: 14617066
Arabidopsis ARGONAUTE1 is an RNA Slicer that selectively recruits microRNAs and short interfering RNAs.
Baumberger N, Baulcombe DC., Proc. Natl. Acad. Sci. U.S.A. 102(33), 2005
PMID: 16081530
The Medicago Genome Initiative: a model legume database.
Bell CJ, Dixon RA, Farmer AD, Flores R, Inman J, Gonzales RA, Harrison MJ, Paiva NL, Scott AD, Weller JW, May GD., Nucleic Acids Res. 29(1), 2001
PMID: 11125064
The interaction of Alba, a conserved archaeal chromatin protein, with Sir2 and its regulation by acetylation.
Bell SD, Botting CH, Wardleworth BN, Jackson SP, White MF., Science 296(5565), 2002
PMID: 11935028
Chromatin dynamics and Arabidopsis development.
Berger F, Gaudin V., Chromosome Res. 11(3), 2003
PMID: 12769294

Bewley, 1994
Gene regulation: expression and silencing coupled.
Buratowski S, Moazed D., Nature 435(7046), 2005
PMID: 15988510
A proteomic study of the arabidopsis nuclear matrix.
Calikowski TT, Meulia T, Meier I., J. Cell. Biochem. 90(2), 2003
PMID: 14505352
A chromatin-associated protein from pea seeds preferentially binds histones H3 and H4.
Castillo J, Zuniga A, Franco L, Rodrigo MI., Eur. J. Biochem. 269(18), 2002
PMID: 12230577
S phase progression is required for transcriptional activation of the beta-phaseolin promoter.
Chandrasekharan MB, Li G, Bishop KJ, Hall TC., J. Biol. Chem. 278(46), 2003
PMID: 12960166
Higher order chromatin architecture in the cell nucleus: on the way from structure to function.
Cremer T, Kupper K, Dietzel S, Fakan S., Biol. Cell 96(8), 2004
PMID: 15519691
Dynamics of transcription and mRNA export.
Darzacq X, Singer RH, Shav-Tal Y., Curr. Opin. Cell Biol. 17(3), 2005
PMID: 15901505
Nuclear export of mRNA: from the site of transcription to the cytoplasm.
Erkmann JA, Kutay U., Exp. Cell Res. 296(1), 2004
PMID: 15120988
Aspects of the barley seed proteome during development and germination.
Finnie C, Maeda K, OStergaard O, Bak-Jensen KS, Larsen J, Svensson B., Biochem. Soc. Trans. 32(Pt3), 2004
PMID: 15157175
Functional analysis of the nuclear proteome of human A549 alveolar epithelial cells by HPLC-high resolution 2-D gel electrophoresis.
Forbus J, Spratt H, Wiktorowicz J, Wu Z, Boldogh I, Denner L, Kurosky A, Brasier RC, Luxon B, Brasier AR., Proteomics 6(9), 2006
PMID: 16586437
Proteomics of Medicago truncatula seed development establishes the timeframe of diverse metabolic processes related to reserve accumulation
Gallardo, Plant Physiol. 133(), 2003
A combined proteome and transcriptome analysis of developing Medicago truncatula seeds: evidence for metabolic specialization of maternal and filial tissues.
Gallardo K, Firnhaber C, Zuber H, Hericher D, Belghazi M, Henry C, Kuster H, Thompson R., Mol. Cell Proteomics 6(12), 2007
PMID: 17848586

Graham, 1997
Ribosome biogenesis: of knobs and RNA processing.
Granneman S, Baserga SJ., Exp. Cell Res. 296(1), 2004
PMID: 15120992
Nop2p is required for pre-rRNA processing and 60S ribosome subunit synthesis in yeast.
Hong B, Brockenbrough JS, Wu P, Aris JP., Mol. Cell. Biol. 17(1), 1997
PMID: 8972218
EBP1 regulates organ size through cell growth and proliferation in plants.
Horvath BM, Magyar Z, Zhang Y, Hamburger AW, Bako L, Visser RG, Bachem CW, Bogre L., EMBO J. 25(20), 2006
PMID: 17024182
LEAFY COTYLEDON1 controls seed storage protein genes through its regulation of FUSCA3 and ABSCISIC ACID INSENSITIVE3.
Kagaya Y, Toyoshima R, Okuda R, Usui H, Yamamoto A, Hattori T., Plant Cell Physiol. 46(3), 2005
PMID: 15695450
Rice proteomics: recent developments and analysis of nuclear proteins.
Khan MM, Komatsu S., Phytochemistry 65(12), 2004
PMID: 15276429
The role of ARGONAUTE1 (AGO1) in meristem formation and identity.
Kidner CA, Martienssen RA., Dev. Biol. 280(2), 2005
PMID: 15882589
Inhibition of nuclear import and cell-cycle progression by mutated forms of the dynamin-like GTPase MxB
King, Proc. Natl Acad. Sci. USA 15(), 2004
Control of FWA gene silencing in Arabidopsis thaliana by SINE-related direct repeats.
Kinoshita Y, Saze H, Kinoshita T, Miura A, Soppe WJ, Koornneef M, Kakutani T., Plant J. 49(1), 2006
PMID: 17144899
Immunolocalization of a novel annexin-like protein encoded by a stress and abscisic acid responsive gene in alfalfa.
Kovacs I, Ayaydin F, Oberschall A, Ipacs I, Bottka S, Pongor S, Dudits D, Toth EC., Plant J. 15(2), 1998
PMID: 9721677
Construction and validation of cDNA-based Mt6k-RIT macro- and microarrays to explore root endosymbioses in the model legume Medicago truncatula.
Kuster H, Hohnjec N, Krajinski F, El YF, Manthey K, Gouzy J, Dondrup M, Meyer F, Kalinowski J, Brechenmacher L, van Tuinen D, Gianinazzi-Pearson V, Puhler A, Gamas P, Becker A., J. Biotechnol. 108(2), 2004
PMID: 15129719
Extensive maternal DNA hypomethylation in the endosperm of Zea mays.
Lauria M, Rupe M, Guo M, Kranz E, Pirona R, Viotti A, Lund G., Plant Cell 16(2), 2004
PMID: 14729913
Protein and RNA export from the nucleus.
Lei EP, Silver PA., Dev. Cell 2(3), 2002
PMID: 11879632
Pescadillo is essential for nucleolar assembly, ribosome biogenesis, and mammalian cell proliferation
Lerch-Gaggl, J. Biol. Chem. 47(), 2002
Plant chromatin: development and gene control.
Li G, Hall TC, Holmes-Davis R., Bioessays 24(3), 2002
PMID: 11891760
Removal of high-abundance proteins for nuclear subproteome studies in rice (Oryza sativa) endosperm.
Li G, Nallamilli BR, Tan F, Peng Z., Electrophoresis 29(3), 2008
PMID: 18203134
A plant dialect of the histone language.
Loidl P., Trends Plant Sci. 9(2), 2004
PMID: 15102374
Targets of RNA-directed DNA methylation.
Matzke M, Kanno T, Huettel B, Daxinger L, Matzke AJ., Curr. Opin. Plant Biol. 10(5), 2007
PMID: 17702644
Developmental analysis of maize endosperm proteome suggests a pivotal role for pyruvate orthophosphate dikinase.
Mechin V, Thevenot C, Le Guilloux M, Prioul JL, Damerval C., Plant Physiol. 143(3), 2007
PMID: 17237188
Nucleo-cytoplasmic partitioning of proteins in plants: implications for the regulation of environmental and developmental signalling
Merkle, Curr. Genet. 44(), 2004
mago nashi mediates the posterior follicle cell-to-oocyte signal to organize axis formation in Drosophila.
Newmark PA, Mohr SE, Gong L, Boswell RE., Development 124(16), 1997
PMID: 9272960
The moving parts of the nucleolus.
Olson MO, Dundr M., Histochem. Cell Biol. 123(3), 2005
PMID: 15742198
The nuclear proteome of chickpea (Cicer arietinum L.) reveals predicted and unexpected proteins.
Pandey A, Choudhary MK, Bhushan D, Chattopadhyay A, Chakraborty S, Datta A, Chakraborty N., J. Proteome Res. 5(12), 2006
PMID: 17137331
Proteomics approach to identify dehydration responsive nuclear proteins from chickpea (Cicer arietinum L.).
Pandey A, Chakraborty S, Datta A, Chakraborty N., Mol. Cell Proteomics 7(1), 2007
PMID: 17921517
Mechanisms of receptor-mediated nuclear import and nuclear export.
Pemberton LF, Paschal BM., Traffic 6(3), 2005
PMID: 15702987
Proteomic analysis of the Arabidopsis nucleolus suggests novel nucleolar functions.
Pendle AF, Clark GP, Boon R, Lewandowska D, Lam YW, Andersen J, Mann M, Lamond AI, Brown JW, Shaw PJ., Mol. Biol. Cell 16(1), 2004
PMID: 15496452
The effect of alpha-amanitin on the Arabidopsis seed proteome highlights the distinct roles of stored and neosynthesized mRNAs during germination.
Rajjou L, Gallardo K, Debeaujon I, Vandekerckhove J, Job C, Job D., Plant Physiol. 134(4), 2004
PMID: 15047896
Transcriptional regulation: a genomic overview
Riechmann, The Arabidopsis Book 16(), 2002

SAS, 1999
Functional proteomic analysis of human nucleolus.
Scherl A, Coute Y, Deon C, Calle A, Kindbeiter K, Sanchez JC, Greco A, Hochstrasser D, Diaz JJ., Mol. Biol. Cell 13(11), 2002
PMID: 12429849
The nucleolus. Playing by different rules?
Shaw P, Doonan J., Cell Cycle 4(1), 2005
PMID: 15655371
Genesis: cluster analysis of microarray data.
Sturn A, Quackenbush J, Trajanoski Z., Bioinformatics 18(1), 2002
PMID: 11836235
Molecular characterization and expression analysis of a highly conserved rice mago nashil homolog.
Swidzinski JA, Zaplachinski ST, Chuong SD, Wong JF, Muench DG., Genome 44(3), 2001
PMID: 11444698
MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes.
Thimm O, Blasing O, Gibon Y, Nagel A, Meyer S, Kruger P, Selbig J, Muller LA, Rhee SY, Stitt M., Plant J. 37(6), 2004
PMID: 14996223
RNA Pol IV plays catch with Argonaute 4.
Till S, Ladurner AG., Cell 131(4), 2007
PMID: 18022355
Dominant negative mutants of Opaque2 suppress transactivation of a 22-kD zein promoter by Opaque2 in maize endosperm cells
Unger, Plant Cell 5(), 2002
Extension of the visualization tool MapMan to allow statistical analysis of arrays, display of corresponding genes, and comparison with known responses.
Usadel B, Nagel A, Thimm O, Redestig H, Blaesing OE, Palacios-Rojas N, Selbig J, Hannemann J, Piques MC, Steinhauser D, Scheible WR, Gibon Y, Morcuende R, Weicht D, Meyer S, Stitt M., Plant Physiol. 138(3), 2005
PMID: 16009995
Molecular physiology of legume seed development.
Weber H, Borisjuk L, Wobus U., Annu Rev Plant Biol 56(), 2005
PMID: 15862096
Subcellular localization of celery mannitol dehydrogenase. A cytosolic metabolic enzyme in nuclei.
Yamamoto YT, Zamski E, Williamson JD, Conkling MA, Pharr DM., Plant Physiol. 115(4), 1997
PMID: 9414553
Conservation and divergence in the AGAMOUS subfamily of MADS-box genes: evidence of independent sub- and neofunctionalization events.
Zahn LM, Leebens-Mack JH, Arrington JM, Hu Y, Landherr LL, dePamphilis CW, Becker A, Theissen G, Ma H., Evol. Dev. 8(1), 2006
PMID: 16409381
Repression of E2F1-mediated transcription by the ErbB3 binding protein Ebp1 involves histone deacetylases
Zhang, Nucleic Acids Res. 15(), 2003
Role of RNA polymerase IV in plant small RNA metabolism.
Zhang X, Henderson IR, Lu C, Green PJ, Jacobsen SE., Proc. Natl. Acad. Sci. U.S.A. 104(11), 2007
PMID: 17360559
Expression and function of HD2-type histone deacetylases in Arabidopsis development.
Zhou C, Labbe H, Sridha S, Wang L, Tian L, Latoszek-Green M, Yang Z, Brown D, Miki B, Wu K., Plant J. 38(5), 2004
PMID: 15144374
Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®
Quellen

PMID: 18643982
PubMed | Europe PMC

Suchen in

Google Scholar