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54 Publications

2018 | Journal Article | PUB-ID: 2919006
Computing the family-free DCJ similarity
Rubert DP, Hoshino EA, Dias Vieira Braga M, Stoye J, Martinez FV (2018)
BMC Bioinformatics 19(Suppl. 6): 152.
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2017 | Journal Article | PUB-ID: 2910493
The joint NETTAB/Integrative Bioinformatics 2015 Meeting: aims, topics and outcomes
Romano P, Hofestädt R, Lange M, D'Elia D (2017)
BMC BIOINFORMATICS 18: 101.
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2016 | Journal Article | PUB-ID: 2907670
Fast ancestral gene order reconstruction of genomes with unequal gene content
Feijão P, Soares de Araujo FE (2016)
BMC Bioinformatics 17(S14): 413.
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2015 | Journal Article | PUB-ID: 2775617
SMRT sequencing only de novo assembly of the sugar beet (Beta vulgaris) chloroplast genome
Stadermann KB, Weisshaar B, Holtgräwe D (2015)
BMC Bioinformatics 16: 295.
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2015 | Journal Article | PUB-ID: 2900856 PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2015 | Journal Article | PUB-ID: 2783101
Reconstruction of ancestral gene orders using intermediate genomes
Feijão P (2015)
BMC Bioinformatics 16(Suppl 14): S3.
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2015 | Journal Article | PUB-ID: 2764888
Ambivalent covariance models
Janssen S, Giegerich R (2015)
BMC Bioinformatics 16: 178.
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2013 | Journal Article | PUB-ID: 2575011
metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences
Ander C, Schulz-Trieglaff OB, Stoye J, Cox AJ (2013)
BMC Bioinformatics 14(Suppl 5: Proc. of RECOMB-Seq 2013): S2.
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2013 | Journal Article | PUB-ID: 2611630
On the Inversion-Indel Distance
Willing E, Zaccaria S, Braga MDV, Stoye J (2013)
BMC Bioinformatics 14(Suppl 15: Proc. of RECOMB-CG 2013): S3.
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2013 | Journal Article | PUB-ID: 2611633
Statistics for approximate gene clusters
Jahn K, Winter S, Stoye J, Böcker S (2013)
BMC Bioinformatics 14(Suppl 15: Proc. of RECOMB-CG 2013): S14.
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2012 | Journal Article | PUB-ID: 2512642
Gene family assignment-free comparative genomics
Dörr D, Thévenin A, Stoye J (2012)
BMC Bioinformatics 13(Suppl 19: Proc. of RECOMB-CG 2012): S3.
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2012 | Journal Article | PUB-ID: 2517239
Combining peak- and chromatogram-based retention time alignment algorithms for multiple chromatography-mass spectrometry datasets
Hoffmann N, Keck M, Neuweger H, Wilhelm M, Högy P, Niehaus K, Stoye J (2012)
BMC Bioinformatics 13(1): 21.
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2012 | Journal Article | PUB-ID: 2512644
Multiple genome comparison based on overlap regions of pairwise local alignments
Jahn K, Sudek H, Stoye J (2012)
BMC Bioinformatics 13(Suppl. 19: Proc. of RECOMB-CG 2012): S7.
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2012 | Journal Article | PUB-ID: 2553300
Linearization of ancestral multichromosomal genomes
Manuch J, Patterson M, Wittler R, Chauve C, Tannier E (2012)
BMC Bioinformatics 13(Proc. of RECOMB-CG 2012).
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2012 | Journal Article | PUB-ID: 2547307
Personalized cloud-based bioinformatics services for research and education: use cases and the elasticHPC package
El-Kalioby M, Abouelhoda M, Krüger J, Giegerich R, Sczyrba A, Wall DP, Tonellato P (2012)
BMC Bioinformatics 13(Suppl 17): S22.
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2011 | Conference Paper | PUB-ID: 2329973
Consistency-based detection of potential tumor-specific deletions in matched normal/tumor genomes
Wittler R, Chauve C (2011)
BMC Bioinformatics 12(Suppl. 9): S21.
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2011 | Journal Article | PUB-ID: 2091779
Swiftly Computing Center Strings
Hufsky F, Kuchenbecker L, Jahn K, Stoye J, Böcker S (2011)
BMC Bioinformatics 12(1): 106.
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2011 | Journal Article | PUB-ID: 2396509
Genomic distance under gene substitutions
Braga MDV, Machado R, Ribeiro LC, Stoye J (2011)
BMC Bioinformatics 12(Suppl 9: Proc. of RECOMB-CG 2011): S8.
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2011 | Journal Article | PUB-ID: 2396558
On the weight of indels in genomic distances
Braga MDV, Machado R, Ribeiro LC, Stoye J (2011)
BMC Bioinformatics 12(Suppl 9: RECOMB-CG 2011): S13.
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2011 | Journal Article | PUB-ID: 2603576
Challenges in the association of human single nucleotide polymorphism mentions with unique database identifiers
Thomas PE, Klinger R, Furlong LI, Hofmann-Apitius M, Friedrich CM (2011)
BMC Bioinformatics 12(Suppl 4): S4.
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