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54 Publications

2016 | Journal Article | PUB-ID: 2905930
Finding approximate gene clusters with GECKO 3
Winter S, Jahn K, Wehner S, Kuchenbecker L, Marz M, Stoye J, Böcker S (2016)
Nucleic Acids Research 44(20): 9600-9610.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Journal Article | PUB-ID: 2694724
Regulation of pri-miRNA processing by the hnRNP-like protein AtGRP7 in Arabidopsis
Köster T, Meyer K, Weinholdt C, Smith LM, Lummer M, Speth C, Grosse I, Weigel D, Staiger D (2014)
Nucleic acids research 42(15): 9925-9936.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Journal Article | PUB-ID: 2579031 PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Journal Article | PUB-ID: 2448791
GABI-Kat SimpleSearch: new features of the Arabidopsis thaliana T-DNA mutant database
Kleinbölting N, Huep G, Klotgen A, Viehöver P, Weisshaar B (2012)
Nucleic Acids Research 40(D1): D1211-D1215.
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2012 | Journal Article | PUB-ID: 2528126
Toward the identification and regulation of the Arabidopsis thaliana ABI3 regulon
Mönke G, Seifert M, Keilwagen J, Mohr M, Grosse I, Hähnel U, Junker A, Weisshaar B, Conrad U, Bäumlein H, Altschmied L (2012)
Nucleic Acids Research 40(17): 8240-8254.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Journal Article | PUB-ID: 2548847
An hnRNP-like RNA-binding protein affects alternative splicing by in vivo interaction with transcripts in Arabidopsis thaliana
Streitner C, Köster T, Simpson CG, Shaw P, Danisman S, Brown JWS, Staiger D (2012)
Nucleic acids research 40(22): 11240-11255.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Journal Article | PUB-ID: 2523617
KOMODO: a web tool for detecting and visualizing biased distribution of groups of homologous genes in monophyletic taxa
Lobo FP, Rodrigues MR, Rodrigues GOL, Hilario HO, Souza RA, Tauch A, Miyoshi A, Franco GC, Azevedo V, Franco GR (2012)
Nucleic Acids Research 40(W1): W491-W497.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Journal Article | PUB-ID: 2471873
CoryneRegNet 6.0--Updated database content, new analysis methods and novel features focusing on community demands
Pauling J, Rottger R, Tauch A, Azevedo V, Baumbach J (2012)
Nucleic Acids Research 40(D1): D610-D614.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Journal Article | PUB-ID: 2298170
Taxonomic classification of metagenomic shotgun sequences with CARMA3.
Gerlach W, Stoye J (2011)
Nucleic Acids Res 39(14): e91.
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2011 | Journal Article | PUB-ID: 1987138
A unique transcriptome: 1782 positions of RNA editing alter 1406 codon identities in mitochondrial mRNAs of the lycophyte Isoetes engelmannii
Grewe F, Herres S, Viehöver P, Polsakiewicz M, Weisshaar B, Knoop V (2011)
Nucleic Acids Research 39(7): 2890-2902.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Journal Article | PUB-ID: 1590766
A trans-splicing group I intron and tRNA-hyperediting in the mitochondrial genome of the lycophyte Isoetes engelmannii
Grewe F, Viehöver P, Weisshaar B, Knoop V (2009)
Nucleic Acids Research 37(15): 5093-5104.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Journal Article | PUB-ID: 1591539
Comprehensive prediction of novel microRNA targets in Arabidopsis thaliana
Alves jun. L, Niemeier S, Hauenschild A, Rehmsmeier M, Merkle T (2009)
Nucleic Acids Research 37(12): 4010-4021.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2009 | Journal Article | PUB-ID: 1591178
From Corynebacterium glutamicum to Mycobacterium tuberculosis-towards transfers of gene regulatory networks and integrated data analyses with MycoRegNet
Krawczyk J, Kohl TA, Goesmann A, Kalinowski J, Baumbach J (2009)
NUCLEIC ACIDS RESEARCH 37(14): e97.
PUB | DOI | WoS | PubMed | Europe PMC
 
2008 | Journal Article | PUB-ID: 1783375 PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Journal Article | PUB-ID: 1586785
Comparative Pathway Analyzer - a web server for comparative analysis, clustering and visualization of metabolic networks in multiple organisms
Oehm S, Gilbert D, Tauch A, Stoye J, Goesmann A (2008)
NUCLEIC ACIDS RESEARCH 36(Web Server): W433-W437.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Journal Article | PUB-ID: 1783364
Phylogenetic classification of short environmental DNA fragments
Krause L, Diaz NN, Goesmann A, Kelley S, Nattkemper TW, Rohwer F, Edwards RA, Stoye J (2008)
Nucleic Acids Research 36(7): 2230-2239.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2008 | Journal Article | PUB-ID: 1783357
KnotInFrame: prediction of –1 ribosomal frameshift events
Theis C, Reeder J, Giegerich R (2008)
Nucleic Acids Research 36(18): 6013-6020.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2007 | Journal Article | PUB-ID: 1783345
GISMO - gene identification using a support vector machine for ORF classification
Krause L, McHardy AC, Nattkemper TW, Pühler A, Stoye J, Meyer F (2007)
Nucleic Acids Research 35(2): 540-549.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2007 | Journal Article | PUB-ID: 1596131
GABI-Kat SimpleSearch: an Arabidopsis thaliana T-DNA mutant database with detailed information for confirmed insertions
Li Y, Rosso MG, Viehöver P, Weisshaar B (2007)
Nucleic Acids Research 35(Database): D874-D878.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2007 | Journal Article | PUB-ID: 1587974
pknotsRG: RNA pseudoknot folding including near-optimal structures and sliding windows
Reeder J, Steffen P, Giegerich R (2007)
NUCLEIC ACIDS RESEARCH 35(Web Server): W320-W324.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 

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