36 Publications

2017 | Journal Article | PUB-ID: 2912492
Comparative scaffolding and gap filling of ancient bacterial genomes applied to two ancient Yersinia pestis genomes
Luhmann N, Dörr D, Chauve C (2017)
Microbial Genomics.
PUB | DOI
 
2017 | Conference Paper | PUB-ID: 2907587
Dynamic Alignment-Free and Reference-Free Read Compression
Holley G, Wittler R, Stoye J, Hach F (2017)
In: Proceedings of RECOMB 2017. Lecture Notes in Bioinformatics, 10229. 50-65.
PUB
 
2017 | Conference Paper | PUB-ID: 2909409
Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings
Cunha L, Dantas S, Gagie T, Wittler R, Kowada L, Stoye J (2017)
In: Proceedings of CPM 2017. LIPIcs, 78. 19:1-19:9.
PUB
 
2017 | Journal Article | PUB-ID: 2909967
New Genome Similarity Measures based on Conserved Gene Adjacencies
Dörr D, Kowada LAB, Soares de Araujo FE, Deshpande S, Dantas S, Moret BME, Stoye J (2017)
Journal of Computational Biology 24(6): 616-634.
PUB | DOI | WoS
 
2017 | Journal Article | PUB-ID: 2911830
ViCAR: An Adaptive and Landmark-Free Registration of Time Lapse Image Data from Microfluidics Experiments
Hattab G, Schlüter J-P, Becker A, Nattkemper TW (2017)
Frontiers in Genetics 8: 69.
PUB | PDF | DOI
 
2017 | Conference Paper | PUB-ID: 2908201
Feature Relevance Bounds for Linear Classification
Göpfert C, Pfannschmidt L, Hammer B (2017)
In: Proceedings of the ESANN. 25th European Symposium on Artificial Neural Networks, Computational Intelligence and Machine Learning.
PUB | PDF
 
2017 | Journal Article | PUB-ID: 2909153
Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism
Yu J, Blom J, Sczyrba A, Goesmann A (2017)
Journal of Biotechnology.
PUB | DOI | PubMed | Europe PMC
 
2017 | Bielefeld Dissertation | PUB-ID: 2909213
Phylogenetic assembly of paleogenomes integrating ancient DNA data
Luhmann N (2017)
Bielefeld: Universität Bielefeld.
PUB | PDF
 
2017 | Journal Article | PUB-ID: 2908574
The SCJ Small Parsimony Problem for Weighted Gene Adjacencies
Luhmann N, Lafond M, Thévenin A, Ouangraoua A, Wittler R, Chauve C (2017)
IEEE/ACM Transactions on Computational Biology and Bioinformatics 14.
PUB | DOI | PubMed | Europe PMC
 
2016 | Journal Article | PUB-ID: 2901460
The BRaliBase Dent – a Tale of Benchmark Design and Interpretation
Löwes B, Chauve C, Ponty Y, Giegerich R (2016)
Briefings in Bioinformatics 18(2): 306-311.
PUB | DOI | WoS | PubMed | Europe PMC
 

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