42 Publications

2017 | Journal Article | PUB-ID: 2914367
Critical Assessment of Metagenome Interpretation—a benchmark of metagenomics software
Sczyrba A, Hofmann P, Belmann P, Koslicki D, Janssen S, Dröge J, Gregor I, Majda S, Fiedler J, Dahms E, Bremges A, et al. (2017)
Nature Methods 14(11): 1063-1071.
PUB | DOI | PubMed | Europe PMC
 
2017 | Conference Paper | PUB-ID: 2907587
Dynamic Alignment-Free and Reference-Free Read Compression
Holley G, Wittler R, Stoye J, Hach F (2017)
In: Proceedings of RECOMB 2017. Lecture Notes in Bioinformatics, 10229. 50-65.
PUB | DOI
 
2017 | Conference Paper | PUB-ID: 2913016
Finding Teams in Graphs and its Application to Spatial Gene Cluster Discovery
Schulz T, Stoye J, Dörr D (2017)
In: Proceedings of RECOMB-CG 2017. Lecture Notes in Bioinformatics, 1704. Berlin: Springer Verlag: 197-212.
PUB | DOI
 
2017 | Book Chapter | PUB-ID: 2913921
Pan-genome Storage and Analysis Techniques
Zekic T, Holley G, Stoye J (In Press)
In: Comparative Genomics: Methods and Protocols. Setubal JC, Stadler P, Stoye J (Eds); Methods in Molecular Biology, 1704. Springer Verlag.
PUB
 
2017 | Book Chapter | PUB-ID: 2913922
Family-Free Genome Comparison
Dörr D, Feijão P, Stoye J (In Press)
In: Comparative Genomics: Methods and Protocols. Setubal JC, Stadler P, Stoye J (Eds); Methods in Molecular Biology, 1704. Springer Verlag.
PUB
 
2017 | Journal Article | PUB-ID: 2913916
A review of bioinformatics platforms for comparative genomics. Recent developments of the EDGAR 2.0 platform and its utility for taxonomic and phylogenetic studies
Yu J, Blom J, Glaeser SP, Jaenicke S, Juhre T, Rupp O, Schwengers O, Spänig S, Goesmann A (2017)
Journal of Biotechnology 261: 2-9.
PUB | DOI
 
2017 | Book Chapter | PUB-ID: 2913924
Comparative Methods for Reconstructing Ancient Genome Organization
Anselmetti Y, Luhmann N, Bérard S, Tannier E, Chauve C (In Press)
In: Comparative Genomics. Setubal JC, Stadler P, Stoye J (Eds); Methods in Molecular Biology. Springer Verlag.
PUB
 
2017 | Conference Paper | PUB-ID: 2913690
Bayesian Collective Markov Random Fields for Subcellular Localization Prediction of Human Proteins
Zhu L, Ester M (2017)
In: Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics - ACM-BCB '17. ACM Press.
PUB | PDF | DOI
 
2017 | Journal Article | PUB-ID: 2909153
Rapid protein alignment in the cloud: HAMOND combines fast DIAMOND alignments with Hadoop parallelism
Yu J, Blom J, Sczyrba A, Goesmann A (2017)
Journal of Biotechnology 257: 58-60.
PUB | DOI | PubMed | Europe PMC
 
2017 | Conference Paper | PUB-ID: 2908201
Feature Relevance Bounds for Linear Classification
Göpfert C, Pfannschmidt L, Hammer B (2017)
In: Proceedings of the ESANN. 25th European Symposium on Artificial Neural Networks, Computational Intelligence and Machine Learning.
PUB | Files available
 

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