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480 Publikationen

2018 | Zeitschriftenaufsatz | PUB-ID: 2919006
Computing the family-free DCJ similarity
Rubert DP, Hoshino EA, Dias Vieira Braga M, Stoye J, Martinez FV (2018)
BMC Bioinformatics 19(Suppl. 6): 152.
PUB | PDF| DOI | WoS | PubMed | Europe PMC
 
2018 | Sammelwerksbeitrag | PUB-ID: 2913921
Pan-genome Storage and Analysis Techniques
Zekic T, Holley G, Stoye J (2018)
In: Comparative Genomics. Methods and Protocols. Setubal JC, Stadler P, Stoye J (Eds); Methods in Molecular Biology, 1704. New York: Springer Verlag: 29-53.
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2018 | Zeitschriftenaufsatz | PUB-ID: 2918481
Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework
Luhmann N, Chauve C, Stoye J, Wittler R (Accepted)
IEEE/ACM Transactions on Computational Biology and Bioinformatics.
PUB| DOI
 
2018 | Sammelwerksbeitrag | PUB-ID: 2913922
Family-Free Genome Comparison
Dörr D, Feijão P, Stoye J (2018)
In: Comparative Genomics: Methods and Protocols. Setubal JC, Stadler P, Stoye J (Eds); Methods in Molecular Biology, 1704. New York: Springer Verlag: 331-342.
PUB
 
2018 | Herausgeber Sammelwerk | PUB-ID: 2913920
Comparative Genomics: Methods and Protocols
Setubal JC, Stadler P, Stoye J (Eds) (2018) Methods in Molecular Biology; 1704.
New York: Springer Verlag.
PUB
 
2018 | Zeitschriftenaufsatz | PUB-ID: 2919005
GraphTeams. A method for discovering spatial gene clusters in Hi-C sequencing data
Schulz T, Stoye J, Dörr D (2018)
BMC Genomics 19(Suppl. 5): 308.
PUB | PDF| DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | PUB-ID: 2919012
Flexible metagenome analysis using the MGX framework
Jaenicke S, Albaum S, Blumenkamp P, Linke B, Stoye J, Goesmann A (2018)
Microbiome 6: 76.
PUB| DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | PUB-ID: 2912492 PUB| DOI | WoS
 
2017 | Konferenzbeitrag | PUB-ID: 2909409
Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings
Cunha L, Dantas S, Gagie T, Wittler R, Kowada L, Stoye J (2017)
In: Proceedings of CPM 2017. LIPIcs, 78. 19:1-19:9.
PUB| DOI
 
2017 | Zeitschriftenaufsatz | PUB-ID: 2909057
Approximating the DCJ distance of balanced genomes in linear time
Rubert DP, Feijão P, Dias Vieira Braga M, Stoye J, Martinez FHV (2017)
Algorithms for Molecular Biology 12: 3.
PUB | PDF| DOI | WoS | PubMed | Europe PMC
 
2017 | Konferenzbeitrag | PUB-ID: 2907587
Dynamic Alignment-Free and Reference-Free Read Compression
Holley G, Wittler R, Stoye J, Hach F (2017)
In: Proceedings of RECOMB 2017. Lecture Notes in Bioinformatics, 10229. 50-65.
PUB| DOI
 
2017 | Sammelwerksbeitrag | PUB-ID: 2913924
Comparative Methods for Reconstructing Ancient Genome Organization
Anselmetti Y, Luhmann N, Bérard S, Tannier E, Chauve C (In Press)
In: Comparative Genomics. Setubal JC, Stadler P, Stoye J (Eds); Methods in Molecular Biology. Springer Verlag.
PUB
 
2017 | Zeitschriftenaufsatz | PUB-ID: 2908574
The SCJ Small Parsimony Problem for Weighted Gene Adjacencies
Luhmann N, Lafond M, Thévenin A, Ouangraoua A, Wittler R, Chauve C (2017)
IEEE/ACM Transactions on Computational Biology and Bioinformatics 14.
PUB| DOI | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | PUB-ID: 2909967
New Genome Similarity Measures based on Conserved Gene Adjacencies
Dörr D, Kowada LAB, Soares de Araujo FE, Deshpande S, Dantas S, Moret BME, Stoye J (2017)
Journal of Computational Biology 24(6): 616-634.
PUB| DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | PUB-ID: 2900129
Bloom Filter Trie: an alignment-free and reference-free data structure for pan-genome storage
Holley G, Wittler R, Stoye J (2016)
Algorithms for Molecular Biology 11: 3.
PUB | PDF| DOI | WoS | PubMed | Europe PMC
 
2016 | Konferenzbeitrag | PUB-ID: 2903708
A Linear Time Approximation Algorithm for the DCJ Distance for Genomes with Bounded Number of Duplicates
Rubert DP, Feijão P, Dias Vieira Braga M, Stoye J, Martinez FV (2016)
In: Proceedings of WABI 2016. LNBI, 9838. 293-306.
PUB| DOI
 
2016 | Zeitschriftenaufsatz | PUB-ID: 2901413
Spatio-Temporal Metabolite Profiling of the Barley Germination Process by MALDI MS Imaging
Gorzolka K, Kölling J, Nattkemper TW, Niehaus K (2016)
PLOS ONE 11(3): 0150208.
PUB | PDF| DOI | WoS | PubMed | Europe PMC
 
2016 | Zeitschriftenaufsatz | PUB-ID: 2905930
Finding approximate gene clusters with GECKO 3
Winter S, Jahn K, Wehner S, Kuchenbecker L, Marz M, Stoye J, Böcker S (2016)
Nucleic Acids Research 44(20): 9600-9610.
PUB| DOI | WoS | PubMed | Europe PMC
 
2016 | Konferenzbeitrag | PUB-ID: 2900111
New Genome Similarity Measures based on Conserved Gene Adjacencies
Kowada LAB, Doerr D, Dantas S, Stoye J (2016)
In: Research in Computational Molecular Biology. RECOMB 2016. Singh M (Ed); Lecture Notes in Bioinformatics (LNBI), 9649. Springer: 204-224.
PUB| DOI
 
2016 | Zeitschriftenaufsatz | PUB-ID: 2900421
Identification of the CIMP-like subtype and aberrant methylation of members of the chromosomal segregation and spindle assembly pathways in esophageal adenocarcinoma
Krause L, Nones K, Loffler KA, Nancarrow D, Oey H, Tang YH, Wayte NJ, Patch AM, Patel K, Brosda S, Manning S, et al. (2016)
Carcinogenesis 37(4): 356-365.
PUB| DOI | WoS | PubMed | Europe PMC
 

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