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206 Publikationen

2018 | Konferenzbeitrag | PUB-ID: 2930445
Identifying Maximal Perfect Haplotype Blocks
Cunha L, Diekmann Y, Kowada L, Stoye J (Accepted)
In: Proceedings of BSB 2018.
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2018 | Zeitschriftenaufsatz | PUB-ID: 2930268
Dynamic Alignment-Free and Reference-Free Read Compression
Holley G, Wittler R, Stoye J, Hach F (2018)
JOURNAL OF COMPUTATIONAL BIOLOGY 25(7): 825-836.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | PUB-ID: 2919006
Computing the family-free DCJ similarity
Rubert DP, Hoshino EA, Dias Vieira Braga M, Stoye J, Martinez FV (2018)
BMC Bioinformatics 19(Suppl. 6): 152.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2018 | Sammelwerksbeitrag | PUB-ID: 2913921
Pan-genome Storage and Analysis Techniques
Zekic T, Holley G, Stoye J (2018)
In: Comparative Genomics. Methods and Protocols. Setubal JC, Stadler P, Stoye J (Eds); Methods in Molecular Biology, 1704. New York: Springer Verlag: 29-53.
PUB
 
2018 | Zeitschriftenaufsatz | PUB-ID: 2918481
Scaffolding of Ancient Contigs and Ancestral Reconstruction in a Phylogenetic Framework
Luhmann N, Chauve C, Stoye J, Wittler R (Accepted)
IEEE/ACM Transactions on Computational Biology and Bioinformatics.
PUB | DOI
 
2018 | Bielefelder E-Dissertation | PUB-ID: 2919356 PUB | PDF
 
2018 | Bielefelder E-Dissertation | PUB-ID: 2918485
Pan-genome Search and Storage
Holley G (2018)
Bielefeld: Universität Bielefeld.
PUB | PDF
 
2018 | Sammelwerksbeitrag | PUB-ID: 2913922
Family-Free Genome Comparison
Dörr D, Feijão P, Stoye J (2018)
In: Comparative Genomics: Methods and Protocols. Setubal JC, Stadler P, Stoye J (Eds); Methods in Molecular Biology, 1704. New York: Springer Verlag: 331-342.
PUB
 
2018 | Herausgeber Sammelwerk | PUB-ID: 2913920
Comparative Genomics: Methods and Protocols
Setubal JC, Stadler P, Stoye J (Eds) (2018) Methods in Molecular Biology; 1704.
New York: Springer Verlag.
PUB
 
2018 | Zeitschriftenaufsatz | PUB-ID: 2919012
Flexible metagenome analysis using the MGX framework
Jaenicke S, Albaum S, Blumenkamp P, Linke B, Stoye J, Goesmann A (2018)
Microbiome 6: 76.
PUB | DOI | WoS | PubMed | Europe PMC
 
2018 | Zeitschriftenaufsatz | PUB-ID: 2919005
GraphTeams. A method for discovering spatial gene clusters in Hi-C sequencing data
Schulz T, Stoye J, Dörr D (2018)
BMC Genomics 19(Suppl. 5): 308.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2017 | Zeitschriftenaufsatz | PUB-ID: 2916552
Genomic Distance with High Indel Costs
da Silva PH, Machado R, Dantas S, Dias Vieira Braga M (2017)
IEEE/ACM Transactions on Computational Biology and Bioinformatics 14(3): 728-732.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Konferenzbeitrag | PUB-ID: 2913015
Algorithms for Computing the Family-Free Genomic Similarity under DCJ
Rubert DP, Medeiros GL, Hoshino EA, Dias Vieira Braga M, Stoye J, Martinez FV (2017)
In: Proceedings of RECOMB-CG 2017. Lecture Notes in Bioinformatics, 10562. Springer Verlag: 76-100.
PUB | DOI
 
2017 | Zeitschriftenaufsatz | PUB-ID: 2912492 PUB | DOI | WoS
 
2017 | Konferenzbeitrag | PUB-ID: 2909409
Fast and Simple Jumbled Indexing for Binary Run-Length Encoded Strings
Cunha L, Dantas S, Gagie T, Wittler R, Kowada L, Stoye J (2017)
In: Proceedings of CPM 2017. LIPIcs, 78. 19:1-19:9.
PUB | DOI
 
2017 | Zeitschriftenaufsatz | PUB-ID: 2911814
The gene family-free median of three
Dörr D, Balaban M, Feijão P, Chauve C (2017)
Algorithms for Molecular Biology 12: 14.
PUB | DOI | WoS | PubMed | Europe PMC
 
2017 | Preprint | PUB-ID: 2908521
Faster Jumbled Indexing for Binary Run-Length Encoded Strings
Cunha L, Dantas S, Gagie T, Wittler R, Kowada L, Stoye J (2017)
arXiv: 1702.01280.
PUB
 
2017 | Bielefelder E-Dissertation | PUB-ID: 2909213
Phylogenetic assembly of paleogenomes integrating ancient DNA data
Luhmann N (2017)
Bielefeld: Universität Bielefeld.
PUB | PDF
 
2017 | Zeitschriftenaufsatz | PUB-ID: 2909057
Approximating the DCJ distance of balanced genomes in linear time
Rubert DP, Feijão P, Dias Vieira Braga M, Stoye J, Martinez FHV (2017)
Algorithms for Molecular Biology 12: 3.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2017 | Konferenzbeitrag | PUB-ID: 2907587
Dynamic Alignment-Free and Reference-Free Read Compression
Holley G, Wittler R, Stoye J, Hach F (2017)
In: Proceedings of RECOMB 2017. Lecture Notes in Bioinformatics, 10229. 50-65.
PUB | DOI
 

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