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43 Publications

2017 | Conference Paper | PUB-ID: 2913690
Bayesian Collective Markov Random Fields for Subcellular Localization Prediction of Human Proteins
Zhu L, Ester M (2017)
In: Proceedings of the 8th ACM International Conference on Bioinformatics, Computational Biology,and Health Informatics - ACM-BCB '17. ACM Press.
PUB | PDF | DOI
 
2015 | Journal Article | PUB-ID: 2765914
CellWhere: graphical display of interaction networks organized on subcellular localizations
Zhu L, Malatras A, Thorley M, Aghoghogbe I, Mer A, Duguez S, Butler-Browne G, Voit T, Duddy W (2015)
Nucleic Acids Research 43(W1): W571-W575.
PUB | DOI | WoS | PubMed | Europe PMC
 
 
2013 | Journal Article | PUB-ID: 2560817
Subcellular localization charts: a new visual methodology for the semi-automatic localization of protein-related data sets
Sommer B, Kormeier B, Demenkov PS, Arrigo P, Hippe K, Ates Ö, Kochetov AV, Ivanisenko VA, Kolchanov NA, Hofestädt R (2013)
Journal of Bioinformatics and Computational Biology 11(01): 1340005.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Journal Article | PUB-ID: 2560811
Computational construction of specialized biological networks
Lee H-M, Dietz K-J, Hofestädt R (2013)
Journal of Bioinformatics and Computational Biology 11(01): 1340003.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Conference Paper | PUB-ID: 2374720
DAWIS-M.D. 2.0 - A Data Warehouse Information System for Metabolic Data
Hippe K, Kormeier B, Janowski SJ, Töpel T, Hofestädt R (2011)
In: Proceedings of the 7th International Symposium on Integrative Bioinformatics.
PUB
 
2011 | Journal Article | PUB-ID: 2408590
MyBioNet: interactively visualize, edit and merge biological networks on the Web
Huang D, Huang Y, Bai Y, Chen D, Hofestädt R, Klukas C, Chen M (2011)
Bioinformatics 27(23): 3321-3322.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Book Chapter | PUB-ID: 2376523
Quantitative Petri Net Model of Gene Regulated Metabolic Networks in the Cell
Chen M, Hofestädt R (2011)
In: Biological Petri Nets. Wingender E (Ed); Technology and Information, 162 1. Edition. Amsterdam: IOS Press: 38-55.
PUB
 
2011 | Journal Article | PUB-ID: 2326407
Petri net models for the semi-automatic construction of large scale biological networks
Chen M, Hariharaputran S, Hofestädt R, Kormeier B, Spangardt S (2011)
Natural Computing 10(3): 1077-1097.
PUB | DOI | WoS
 
2011 | Journal Article | PUB-ID: 2290112
A Systematic Petri Net Approach for Multiple-Scale Modeling and Simulation of Biochemical Processes
Chen M, Hu M, Hofestädt R (2011)
Applied Biochemistry and Biotechnology 164(3): 338-352.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Conference Paper | PUB-ID: 2458209
Fundamental Features of Metabolic Computing
Hofestädt R (2011)
In: Advances in Soft Computing: 10th Mexican International Conference on Artificial Intelligence, MICAI 2011, Puebla, Mexico, November 26 - December 4, 2011, Proceedings, Part II. Batyrshin I, Sidorov G (Eds); Lecture Notes in Computer Science, 7095. Berlin, Heidelberg: Springer: 143-152.
PUB | DOI
 
2011 | Journal Article | PUB-ID: 2408602
Data Warehouses in Bioinformatics: Integration of Molecular Biological Data
Kormeier B, Hippe K, Hofestädt R (2011)
it Information Technology 53(5): 241-249.
PUB | DOI
 
2011 | Book Chapter | PUB-ID: 2376542
Modeling of Cell-to-Cell communication processes with Petri Nets using the example of Quorum Sensing
Janowski SJ, Kormeier B, Töpel T, Hofestädt R (2011)
In: Biological Petri Nets. Wingender E (Ed); Technology and Information, 162 1. Edition. Amsterdam: IOS Press: 182-203.
PUB | PubMed | Europe PMC
 
2011 | Book Chapter | PUB-ID: 2376491
Quantitative Modeling of Biochemical Networks
Hofestädt R, Thelen S (2011)
In: Biological Petri Nets. Wingender E (Ed); Technology and Information, 162 1. Edition. Amsterdam: IOS Press: 3-16.
PUB
 
2011 | Book Chapter | PUB-ID: 2376427
Petri Nets and the Simulation of Biochemical Networks
Hofestädt R (2011)
In: Biological Petri Nets. Wingender E (Ed); Biological Petri Nets, 162 1. Edition. Amsterdam: IOS Press: 1-2.
PUB
 
2011 | Journal Article | PUB-ID: 2317695
Petri nets and the simulation of metabolic networks
Hofestädt R (2011)
Studies in health technology and informatics 162.
PUB | PubMed | Europe PMC
 
2010 | Conference (Editor) | PUB-ID: 2376605
Computational Systems Biology: German/Russian Network of Computational Systems Biology
Hofestädt R, Kolchanov N (Eds) (2010)
Medizinische Informatik und Bioinformatik.
PUB
 
2010 | Journal Article | PUB-ID: 2409400
RAMEDIS: a comprehensive information system for variations and corresponding phenotypes of rare metabolic diseases
Töpel T, Scheible D, Trefz F, Hofestädt R (2010)
Human Mutation 31(1): E1081-E1088.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Journal Article | PUB-ID: 1960746
Modeling of cell-cell communication processes with Petri nets using the example of quorum sensing
Janowski SJ, Kormeier B, Töpel T, Hippe K, Hofestädt R, Willassen N, Friesen R, Rubert S, Borck D, Haugen P, Chen M (2010)
In Silico Biology 10(Special Issue: Petri Net Applications in Molecular Biology).
PUB
 
2010 | Journal Article | PUB-ID: 2374757
Visualization and Analysis of a Cardio Vascular Disease-and MUPP1-related Biological Network combining Text Mining and Data Warehouse Approaches
Sommer B, Tiys ES, Kormeier B, Hippe K, Janowski SJ, Ivanisenko TV, Bragin AO, Arrigo P, Demenkov PS, Kochetov AV, Ivanisenko VA, et al. (2010)
Journal of Integrative Bioinformatics 7(1): 148.
PUB | DOI | PubMed | Europe PMC
 

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