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62 Publications

2012 | Book Chapter | PUB-ID: 2439665
Abstract Shape Analysis of RNA
Janssen S, Giegerich R (2012)
In: RNA Bioinformatics t.b.a. Gorodkin J, Weinberg Z (Eds); 1-35.
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2011 | Journal Article | PUB-ID: 2383363
Forest Alignment with Affine Gaps and Anchors
Schirmer S, Giegerich R (2011)
Combinatorial Pattern Matching: 104-117.
PUB | DOI
 
2011 | Journal Article | PUB-ID: 2410526
Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction
Janssen S, Schudoma C, Steger G, Giegerich R (2011)
BMC Bioinformatics 12(1): 429.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2011 | Conference Paper | PUB-ID: 2310489
Bellman's GAP: a declarative language for dynamic programming
Sauthoff G, Janssen S, Giegerich R (2011)
In: Proceedings of the 13th international ACM SIGPLAN symposium on Principles and practices of declarative programming. New York, NY, USA: ACM: 29-40.
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2011 | Journal Article | PUB-ID: 2427226
Conservation and Occurrence of Trans-Encoded sRNAs in the Rhizobiales
Reinkensmeier J, Schlüter J-P, Giegerich R, Becker A (2011)
GENES: 925-956.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Journal Article | PUB-ID: 2093578
Conveyor: a workflow engine for bioinformatic analyses
Linke B, Giegerich R, Goesmann A (2011)
Bioinformatics 27(7): 903-911.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Conference Paper | PUB-ID: 2383357
Yield grammar analysis in the Bellman's GAP compiler
Giegerich R, Sauthoff G (2011)
In: Proceedings of the Eleventh Workshop on Language Descriptions, Tools and Applications (ACM).
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2011 | Journal Article | PUB-ID: 2003355
Semantics and Ambiguity of Stochastic RNA Family Models
Giegerich R, Hoener Zu Siederdissen C (2011)
IEEE/ACM Transactions on Computational Biology and Bioinformatics 8(2): 499-516.
PUB | DOI | WoS | PubMed | Europe PMC
 
2010 | Conference Paper | PUB-ID: 1894008
Prediction of RNA Secondary Structure Including Kissing Hairpin Motifs
Theis C, Janssen S, Giegerich R (2010)
In: Algorithms in Bioinformatics. 10th international workshop (WABI 2010), proceedings. Moulton V, Singh M (Eds); Lecture Notes in Bioinformatics, 6293. Berlin: Springer: 52-64.
PUB | File | DOI
 
2010 | Journal Article | PUB-ID: 1785497
A genome-wide survey of sRNAs in the symbiotic nitrogen-fixing alpha-proteobacterium Sinorhizobium meliloti
Schlüter J-P, Reinkensmeier J, Daschkey S, Evguenieva-Hackenberg E, Janssen S, Jaenicke S, Becker JD, Giegerich R, Becker A (2010)
BMC Genomics 11(1): 245.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2010 | Journal Article | PUB-ID: 1893946
Faster computation of exact RNA shape probabilities
Janssen S, Giegerich R (2010)
Bioinformatics 26(5): 632-639.
PUB | File | DOI | WoS | PubMed | Europe PMC
 
2010 | Journal Article | PUB-ID: 1785581
WAMI: a web server for the analysis of minisatellite maps
Abouelhoda M, El-Kalioby M, Giegerich R (2010)
BMC Evolutionary Biology 10(1): 167.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2010 | Journal Article | PUB-ID: 1785512
Fine-tuning structural RNA alignments in the twilight zone
Bremges A, Schirmer S, Giegerich R (2010)
BMC Bioinformatics 11(1): 222.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2010 | Journal Article | PUB-ID: 1796697
Analyzing ambiguity of context-free grammars
Brabrand C, Giegerich R, Moller A (2010)
SCIENCE OF COMPUTER PROGRAMMING 75(3): 176-191.
PUB | DOI | WoS
 
2009 | Journal Article | PUB-ID: 2383411
RNA secondary structure analysis using the RNAshapes package
Reeder J, Giegerich R (2009)
Current Protocols in Bioinformatics.
PUB | DOI | PubMed | Europe PMC
 
2009 | Conference Paper | PUB-ID: 2383425
GPU Parallization of Algebraic Dynamic Programming
Steffen P, Giegerich R, Giraud M (Unpublished)
In: Proceedings PPAM.
PUB
 
2009 | Journal Article | PUB-ID: 1634374
mkESA: enhanced suffix array construction tool
Homann R, Fleer D, Giegerich R, Rehmsmeier M (2009)
Bioinformatics 25(8): 1084-1085.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Journal Article | PUB-ID: 1589458
Significant speedup of database searches with HMMs by search space reduction with PSSM family models
Beckstette M, Homann R, Giegerich R, Kurtz S (2009)
Bioinformatics 25(24): 3251-3258.
PUB | DOI | WoS | PubMed | Europe PMC
 
2009 | Journal Article | PUB-ID: 2383365
Alignment of minisatellite maps based on run-length encoding scheme
Abouelhoda M, Giegerich R, Behzadi B, Steyaert JM (2009)
Journal of Bioinformatics and Computational Biology 7(02): 287-308.
PUB | DOI | PubMed | Europe PMC
 
2008 | Conference Abstract | PUB-ID: 1587496
Looking for non-coding RNAs in Corynebacterium glutamicum
Gkogkoglou K, Mentz A, Albersmeier A, Kalinowski J, Giegerich R (2008)
FEBS JOURNAL 275(Suppl. 1): 153.
PUB | WoS
 

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