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136 Publications

2006 | Journal Article | PUB-ID: 1600421
RNAshapes: an integrated RNA analysis package based on abstract shapes
Steffen P, Voss B, Rehmsmeier M, Reeder J, Giegerich R (2006)
Bioinformatics 22(4): 500-503.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Conference Paper | PUB-ID: 1598807
Beyond Mfold: recent advances in RNA bioinformatics
Reeder J, Höchsmann M, Rehmsmeier M, Voss B, Giegerich R (2006)
JOURNAL OF BIOTECHNOLOGY 124(1): 41-55.
PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Conference Paper | PUB-ID: 2383518
A graphical programming system for molecular motif search
Reeder J, Giegerich R (2006)
In: Proceedings of the 5th International Conference on Generative Programming and Component Engineering. ACM Press: 131-140.
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2006 | Journal Article | PUB-ID: 1600726
Calculating PSSM probabilities with lazy dynamic programming
Malde K, Giegerich R (2006)
Jornal of Functional Programming 16(01): 75-81.
PUB | DOI | WoS
 
2006 | Journal Article | PUB-ID: 1946336
Thermodynamic matchers: strengthening the significance of RNA folding energies
Höchsmann T, Höchsmann M, Giegerich R (2006)
Comput Syst Bioinformatics Conf.
PUB | DOI | PubMed | Europe PMC
 
2006 | Conference Paper | PUB-ID: 2383464
Challenges in the Compilation of a Domain Specific Language for Dynamic Programming
Giegerich R, Steffen P (2006)
In: Proceedings of te 2006 ACM Symposium on Applied Computing.
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2006 | Journal Article | PUB-ID: 1902179 PUB | DOI | WoS | PubMed | Europe PMC
 
2006 | Journal Article | PUB-ID: 1597065
Surprises in approximating Levenshtein distances
Baake M, Grimm U, Giegerich R (2006)
JOURNAL OF THEORETICAL BIOLOGY 243(2): 279-282.
PUB | DOI | WoS | PubMed | Europe PMC
 
2005 | Journal Article | PUB-ID: 1773595
Effective ambiguity checking in biosequence analysis
Reeder J, Steffen P, Giegerich R (2005)
BMC Bioinformatics 6(1): 153.
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2005 | Journal Article | PUB-ID: 1773598
Versatile and declarative dynamic programming using pair algebras
Steffen P, Giegerich R (2005)
BMC Bioinformatics 6(1): 224.
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2005 | Journal Article | PUB-ID: 1773613
XenDB: Full length cDNA prediction and cross species mapping in Xenopus laevis
Sczyrba A, Beckstette M, Brivanlou AH, Giegerich R, Altmann CR (2005)
BMC Genomics 6(1): 123.
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2005 | Journal Article | PUB-ID: 1602431
Consensus shapes: an alternative to the Sankoff algorithm for RNA consensus structure prediction
Reeder J, Giegerich R (2005)
BIOINFORMATICS 21(17): 3516-3523.
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2004 | Bielefeld Dissertation | PUB-ID: 2304811
Advanced tools for RNA secondary structure analysis
Voß B (2004)
Bielefeld (Germany): Bielefeld University.
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2004 | Conference Proceedings Editor | PUB-ID: 1918823
Proceedings of the German Conference on Bioinformatics, GCB 2004
Giegerich R, Stoye J (Eds) (2004)
Lecture Notes in Informatics P-53.
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2004 | Journal Article | PUB-ID: 2383529
Genlight: Interactive high-throughput sequence analysis and comparative genomics
Beckstette M, Mailänder JT, Marhöfer RJ, Sczyrba A, Ohlebusch E, Giegerich R, Selzer PM (2004)
Journal of Integrative Bioinformatics 1(1): 0008.
PUB | DOI
 
2004 | Bielefeld Master Thesis | PUB-ID: 2306150
BiBiWS : ein Framework für die Entwicklung asynchroner WebServices auf dem BiBiServ
Mersch H (2004)
Bielefeld (Germany): Bielefeld University.
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2004 | Journal Article | PUB-ID: 1773758 PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2004 | Journal Article | PUB-ID: 1607394
e2g: an interactive web-based server for efficiently mapping large EST and cDNA sets to genomic sequences
Krüger J, Sczyrba A, Kurtz S, Giegerich R (2004)
NUCLEIC ACIDS RESEARCH 32(Web Server): W301-W304.
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2004 | Journal Article | PUB-ID: 1773747
A comprehensive comparison of comparative RNA structure prediction approaches
Gardner PP, Giegerich R (2004)
BMC Bioinformatics 5(1): 140.
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2004 | Journal Article | PUB-ID: 1606393
Abstract shapes of RNA
Giegerich R, Voss B, Rehmsmeier M (2004)
Nucleic Acids Research 32(16): 4843-4851.
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