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135 Publications

2016 | Journal Article | PUB-ID: 2901460
The BRaliBase Dent – a Tale of Benchmark Design and Interpretation
Löwes B, Chauve C, Ponty Y, Giegerich R (2016)
Briefings in Bioinformatics 18(2): 306-311.
PUB | DOI | WoS | PubMed | Europe PMC
 
2016 | Journal Article | PUB-ID: 2903044
Integrating Pareto Optimization into Dynamic Programming
Gatter T, Giegerich R, Saule C (2016)
ALGORITHMS 9(1): 12.
PUB | DOI | WoS
 
2014 | Journal Article | PUB-ID: 2905757 PUB | DOI
 
2014 | Journal Article | PUB-ID: 2699792
Riboregulation in plant-associated alpha-proteobacteria
Becker A, Overloeper A, Schlueter J-P, Reinkensmeier J, Robledo M, Giegerich R, Narberhaus F, Evguenieva-Hackenberg E (2014)
RNA Biology 11(5): 550-562.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Journal Article | PUB-ID: 2699802
Genome-wide profiling of Hfq-binding RNAs uncovers extensive post-transcriptional rewiring of major stress response and symbiotic regulons in Sinorhizobium meliloti
Torres-Quesada O, Reinkensmeier J, Schlueter J-P, Robledo M, Peregrina A, Giegerich R, Toro N, Becker A, Jimenez-Zurdo JI (2014)
RNA Biology 11(5): 563-579.
PUB | DOI | WoS | PubMed | Europe PMC
 
2014 | Bielefeld Dissertation | PUB-ID: 2682131 PUB | PDF
 
2014 | Journal Article | PUB-ID: 2681698
Yield grammar analysis and product optimization in a domain-specific language for dynamic programming
Sauthoff G, Giegerich R (2014)
Science of Computer Programming 87: 2-22.
PUB | DOI | WoS
 
2013 | Journal Article | PUB-ID: 2645192
A Silent Exonic SNP in Kdm3a Affects Nucleic Acids Structure but Does Not Regulate Experimental Autoimmune Encephalomyelitis
Gillett A, Bergman P, Parsa R, Bremges A, Giegerich R, Jagodic M (2013)
Plos One 8(12): e81912.
PUB | DOI | WoS | PubMed | Europe PMC
 
2013 | Conference Paper | PUB-ID: 2901275
Avoiding Ambiguity and Assessing Uniqueness in Minisatellite Alignment
Löwes B, Giegerich R (2013)
In: German Conference on Bioinformatics 2013. Beißbarth T, Kollmar M, Leha A, Morgenstern B, Schultz A-K, Waack S, Wingender E (Eds); OpenAccess Series in Informatics (OASIcs), 34. Dagstuhl, Germany: Schloss Dagstuhl - Leibniz-Zentrum für Informatik: 110-124.
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2013 | Journal Article | PUB-ID: 2607289
Forest alignment with affine gaps and anchors, applied in RNA structure comparison
Schirmer S, Giegerich R (2013)
Theoretical Computer Science 483: 51-67.
PUB | DOI | WoS
 
2013 | Journal Article | PUB-ID: 2584661
Global mapping of transcription start sites and promoter motifs in the symbiotic a-proteobacterium Sinorhizobium meliloti 1021
Schlueter J-P, Reinkensmeier J, Barnett MJ, Lang C, Krol E, Giegerich R, Long SR, Becker A (2013)
Bmc Genomics 14(1): 156.
PUB | DOI | WoS | PubMed | Europe PMC
 
2012 | Book Chapter | PUB-ID: 2439665
Abstract Shape Analysis of RNA
Janssen S, Giegerich R (2012)
In: RNA Bioinformatics t.b.a. Gorodkin J, Weinberg Z (Eds); 1-35.
PUB
 
2011 | Journal Article | PUB-ID: 2383363
Forest Alignment with Affine Gaps and Anchors
Schirmer S, Giegerich R (2011)
Combinatorial Pattern Matching: 104-117.
PUB | DOI
 
2011 | Journal Article | PUB-ID: 2410526
Lost in folding space? Comparing four variants of the thermodynamic model for RNA secondary structure prediction
Janssen S, Schudoma C, Steger G, Giegerich R (2011)
BMC Bioinformatics 12(1): 429.
PUB | PDF | DOI | WoS | PubMed | Europe PMC
 
2011 | Bielefeld Dissertation | PUB-ID: 2474238
Comparing forests
Schirmer S (2011)
Bielefeld: Bielefeld University.
PUB | PDF
 
2011 | Bielefeld Dissertation | PUB-ID: 2302459
Analytische und empirische Untersuchungen über abstrakte Shapes von RNA-Sekundärstrukturen
Abdul-Hak S (2011)
Bielefeld (Germany): Bielefeld University.
PUB | PDF
 
2011 | Conference Paper | PUB-ID: 2310489
Bellman's GAP: a declarative language for dynamic programming
Sauthoff G, Janssen S, Giegerich R (2011)
In: Proceedings of the 13th international ACM SIGPLAN symposium on Principles and practices of declarative programming. New York, NY, USA: ACM: 29-40.
PUB | DOI
 
2011 | Journal Article | PUB-ID: 2427226
Conservation and Occurrence of Trans-Encoded sRNAs in the Rhizobiales
Reinkensmeier J, Schlüter J-P, Giegerich R, Becker A (2011)
GENES: 925-956.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Journal Article | PUB-ID: 2093578
Conveyor: a workflow engine for bioinformatic analyses
Linke B, Giegerich R, Goesmann A (2011)
Bioinformatics 27(7): 903-911.
PUB | DOI | WoS | PubMed | Europe PMC
 
2011 | Conference Paper | PUB-ID: 2383357
Yield grammar analysis in the Bellman's GAP compiler
Giegerich R, Sauthoff G (2011)
In: Proceedings of the Eleventh Workshop on Language Descriptions, Tools and Applications (ACM).
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