Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants

Stolze Y, Bremges A, Maus I, Pühler A, Sczyrba A, Schlüter A (2017)
Microbial Biotechnology.

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Journal Article | Original Article | Epub ahead of print | English

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Abstract
Biogas production is performed anaerobically by complex microbial communities with key species driving the process. Hence, analyses of their insitu activities are crucial to understand the process. In a previous study, metagenome sequencing and subsequent genome binning for different production-scale biogas plants (BGPs) resulted in four genome bins of special interest, assigned to the phyla Thermotogae, Fusobacteria, Spirochaetes and Cloacimonetes, respectively, that were genetically analysed. In this study, metatranscriptome sequencing of the same BGP samples was conducted, enabling insitu transcriptional activity determination of these genome bins. For this, mapping of metatranscriptome reads on genome bin sequences was performed providing transcripts per million (TPM) values for each gene. This approach revealed an active sugar-based metabolism of the Thermotogae and Spirochaetes bins and an active amino acid-based metabolism of the Fusobacteria and Cloacimonetes bins. The data also hint at syntrophic associations of the four corresponding species with methanogenic Archaea. © 2017 The Authors. Microbial Biotechnology published by John Wiley & Sons Ltd and Society for Applied Microbiology.
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Stolze Y, Bremges A, Maus I, Pühler A, Sczyrba A, Schlüter A. Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants. Microbial Biotechnology. 2017.
Stolze, Y., Bremges, A., Maus, I., Pühler, A., Sczyrba, A., & Schlüter, A. (2017). Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants. Microbial Biotechnology. doi:10.1111/1751-7915.12982
Stolze, Y., Bremges, A., Maus, I., Pühler, A., Sczyrba, A., and Schlüter, A. (2017). Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants. Microbial Biotechnology.
Stolze, Y., et al., 2017. Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants. Microbial Biotechnology.
Y. Stolze, et al., “Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants”, Microbial Biotechnology, 2017.
Stolze, Y., Bremges, A., Maus, I., Pühler, A., Sczyrba, A., Schlüter, A.: Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants. Microbial Biotechnology. (2017).
Stolze, Yvonne, Bremges, Andreas, Maus, Irena, Pühler, Alfred, Sczyrba, Alexander, and Schlüter, Andreas. “Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants”. Microbial Biotechnology (2017).
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PMID: 29205917
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