Denitrifying community in coastal sediments performs aerobic and anaerobic respiration simultaneously

Marchant HK, Ahmerkamp S, Lavik G, Tegetmeyer H, Graf J, Klatt JM, Holtappels M, Walpersdorf E, Kuypers MMM (2017)
ISME JOURNAL 11(8): 1799-1812.

Download
Es wurde kein Volltext hochgeladen. Nur Publikationsnachweis!
Zeitschriftenaufsatz | Veröffentlicht | Englisch
Autor
; ; ; ; ; ; ; ;
Abstract / Bemerkung
Nitrogen (N) input to the coastal oceans has increased considerably because of anthropogenic activities, however, concurrent increases have not occurred in open oceans. It has been suggested that benthic denitrification in sandy coastal sediments is a sink for this N. Sandy sediments are dynamic permeable environments, where electron acceptor and donor concentrations fluctuate over short temporal and spatial scales. The response of denitrifiers to these fluctuations are largely unknown, although previous observations suggest they may denitrify under aerobic conditions. We examined the response of benthic denitrification to fluctuating oxygen concentrations, finding that denitrification not only occurred at high O-2 concentrations but was stimulated by frequent switches between oxic and anoxic conditions. Throughout a tidal cycle, in situ transcription of genes for aerobic respiration and denitrification were positively correlated within diverse bacterial classes, regardless of O-2 concentrations, indicating that denitrification gene transcription is not strongly regulated by O-2 in sandy sediments. This allows microbes to respond rapidly to changing environmental conditions, but also means that denitrification is utilized as an auxiliary respiration under aerobic conditions when imbalances occur in electron donor and acceptor supply. Aerobic denitrification therefore contributes significantly to N-loss in permeable sediments making the process an important sink for anthropogenic N-inputs.
Erscheinungsjahr
Zeitschriftentitel
ISME JOURNAL
Band
11
Zeitschriftennummer
8
Seite
1799-1812
ISSN
eISSN
PUB-ID

Zitieren

Marchant HK, Ahmerkamp S, Lavik G, et al. Denitrifying community in coastal sediments performs aerobic and anaerobic respiration simultaneously. ISME JOURNAL. 2017;11(8):1799-1812.
Marchant, H. K., Ahmerkamp, S., Lavik, G., Tegetmeyer, H., Graf, J., Klatt, J. M., Holtappels, M., et al. (2017). Denitrifying community in coastal sediments performs aerobic and anaerobic respiration simultaneously. ISME JOURNAL, 11(8), 1799-1812. doi:10.1038/ismej.2017.51
Marchant, H. K., Ahmerkamp, S., Lavik, G., Tegetmeyer, H., Graf, J., Klatt, J. M., Holtappels, M., Walpersdorf, E., and Kuypers, M. M. M. (2017). Denitrifying community in coastal sediments performs aerobic and anaerobic respiration simultaneously. ISME JOURNAL 11, 1799-1812.
Marchant, H.K., et al., 2017. Denitrifying community in coastal sediments performs aerobic and anaerobic respiration simultaneously. ISME JOURNAL, 11(8), p 1799-1812.
H.K. Marchant, et al., “Denitrifying community in coastal sediments performs aerobic and anaerobic respiration simultaneously”, ISME JOURNAL, vol. 11, 2017, pp. 1799-1812.
Marchant, H.K., Ahmerkamp, S., Lavik, G., Tegetmeyer, H., Graf, J., Klatt, J.M., Holtappels, M., Walpersdorf, E., Kuypers, M.M.M.: Denitrifying community in coastal sediments performs aerobic and anaerobic respiration simultaneously. ISME JOURNAL. 11, 1799-1812 (2017).
Marchant, Hannah K., Ahmerkamp, Soeren, Lavik, Gaute, Tegetmeyer, Halina, Graf, Jon, Klatt, Judith M., Holtappels, Moritz, Walpersdorf, Eva, and Kuypers, Marcel M. M. “Denitrifying community in coastal sediments performs aerobic and anaerobic respiration simultaneously”. ISME JOURNAL 11.8 (2017): 1799-1812.

4 Zitationen in Europe PMC

Daten bereitgestellt von Europe PubMed Central.

Copepod-Associated Gammaproteobacteria Respire Nitrate in the Open Ocean Surface Layers.
Moisander PH, Shoemaker KM, Daley MC, McCliment E, Larkum J, Altabet MA., Front Microbiol 9(), 2018
PMID: 30369912
Metabolic specialization of denitrifiers in permeable sediments controls N2 O emissions.
Marchant HK, Tegetmeyer HE, Ahmerkamp S, Holtappels M, Lavik G, Graf J, Schreiber F, Mussmann M, Strous M, Kuypers MMM., Environ Microbiol 20(12), 2018
PMID: 30117262
A bet-hedging strategy for denitrifying bacteria curtails their release of N2O.
Lycus P, Soriano-Laguna MJ, Kjos M, Richardson DJ, Gates AJ, Milligan DA, Frostegård Å, Bergaust L, Bakken LR., Proc Natl Acad Sci U S A 115(46), 2018
PMID: 30385636

74 References

Daten bereitgestellt von Europe PubMed Central.

The impact of bedform migration on benthic oxygen fluxes
AUTHOR UNKNOWN, 2015
Regulation of denitrification at the cellular level: a clue to the understanding of N2O emissions from soils
AUTHOR UNKNOWN, 2012
Dynamics of denitrification activity of Paracoccus denitrificans in continuous culture during aerobic-anaerobic changes.
Baumann B, Snozzi M, Zehnder AJ, Van Der Meer JR., J. Bacteriol. 178(15), 1996
PMID: 8755862
Inhibition of denitrification activity but not of mRNA induction in Paracoccus denitrificans by nitrite at a suboptimal pH.
Baumann B, van der Meer JR, Snozzi M, Zehnder AJ., Antonie Van Leeuwenhoek 72(3), 1997
PMID: 9403103
Expression of nitrous oxide reductase in Paracoccus denitrificans is regulated by oxygen and nitric oxide through FnrP and NNR.
Bergaust L, van Spanning RJ, Frostegard A, Bakken LR., Microbiology (Reading, Engl.) 158(Pt 3), 2011
PMID: 22174385
Surficial and deep pore water circulation governs spatial and temporal scales of nutrient recycling in intertidal sand flat sediment
AUTHOR UNKNOWN, 2006
Temporal variations in microbial activities and carbon turnover in subtidal sandy sediments
AUTHOR UNKNOWN, 2009
Trimmomatic: a flexible trimmer for Illumina sequence data
AUTHOR UNKNOWN, 2014
Constraining denitrification in permeable wave-influenced marine sediment using linked hydrodynamic and biogeochemical modeling
AUTHOR UNKNOWN, 2008
Denitrification and aerobic respiration, hybrid electron transport chains and co-evolution
AUTHOR UNKNOWN, 2013
Oxygen at nanomolar levels reversibly suppresses process rates and gene expression in anammox and denitrification in the oxygen minimum zone off northern Chile.
Dalsgaard T, Stewart FJ, Thamdrup B, De Brabandere L, Revsbech NP, Ulloa O, Canfield DE, DeLong EF., MBio 5(6), 2014
PMID: 25352619
Transport and mineralization rates in North Sea sandy intertidal sediments, Sylt-Romo Basin, Wadden Sea
AUTHOR UNKNOWN, 2005
Key respiratory genes elucidate bacterial community respiration in a seasonally anoxic estuary.
Eggleston EM, Lee DY, Owens MS, Cornwell JC, Crump BC, Hewson I., Environ. Microbiol. 17(7), 2015
PMID: 25470994
Effect of advective pore water transport on distribution and degradation of diatoms in permeable North Sea sediments
AUTHOR UNKNOWN, 2004
Decomposition of diatoms and nutrient dynamics in permeable North Sea sediments
AUTHOR UNKNOWN, 2004
Relict sediments on continental shelves of world
AUTHOR UNKNOWN, 1968
Aerobic denitrifiers isolated from an alternating activated sludge system
AUTHOR UNKNOWN, 1997
Nitrogen cycles: past, present, and future
AUTHOR UNKNOWN, 2004
Aerobic denitrification in permeable Wadden Sea sediments.
Gao H, Schreiber F, Collins G, Jensen MM, Svitlica O, Kostka JE, Lavik G, de Beer D, Zhou HY, Kuypers MM., ISME J 4(3), 2009
PMID: 20010631
Intensive and extensive nitrogen loss from intertidal permeable sediments of the Wadden Sea
AUTHOR UNKNOWN, 2012
Denitrification in shallow, sublittoral Gulf of Mexico permeable sediments
AUTHOR UNKNOWN, 2010
An Earth-system perspective of the global nitrogen cycle.
Gruber N, Galloway JN., Nature 451(7176), 2008
PMID: 18202647
The continental shelf benthic ecosystem: current status, agents for change and future prospects
AUTHOR UNKNOWN, 2002
Metatranscriptomic analyses of plankton communities inhabiting surface and subpycnocline waters of the Chesapeake Bay during oxic-anoxic-oxic transitions.
Hewson I, Eggleston EM, Doherty M, Lee DY, Owens M, Shapleigh JP, Cornwell JC, Crump BC., Appl. Environ. Microbiol. 80(1), 2013
PMID: 24162577
Transport and degradation of phytoplankton in permeable sediment
AUTHOR UNKNOWN, 2000
Hydrodynamical impact on biogeochemical processes in aquatic sediments
AUTHOR UNKNOWN, 2003
Benthic exchange and biogeochemical cycling in permeable sediments
AUTHOR UNKNOWN, 2014
Integrative analysis of environmental sequences using MEGAN4.
Huson DH, Mitra S, Ruscheweyh HJ, Weber N, Schuster SC., Genome Res. 21(9), 2011
PMID: 21690186
Prodigal: prokaryotic gene recognition and translation initiation site identification
AUTHOR UNKNOWN, 2010
Functioning of intertidal flats inferred from temporal and spatial dynamics of O, HS and pH in their surface sediment
AUTHOR UNKNOWN, 2009
Aerobic denitrification: a review of important advances of the last 30 years
AUTHOR UNKNOWN, 2015
Diversity of oxygen and N-oxide regulation of nitrite reductases in denitrifying bacteria.
Ka JO, Urbance J, Ye RW, Ahn TY, Tiedje JM., FEMS Microbiol. Lett. 156(1), 1997
PMID: 9368361
Aerobic Microbial Respiration In Oceanic Oxygen Minimum Zones.
Kalvelage T, Lavik G, Jensen MM, Revsbech NP, Loscher C, Schunck H, Desai DK, Hauss H, Kiko R, Holtappels M, LaRoche J, Schmitz RA, Graco MI, Kuypers MM., PLoS ONE 10(7), 2015
PMID: 26192623
Aerobic denitrification of Pseudomonas putida AD-21 at different C/N ratios.
Kim M, Jeong SY, Yoon SJ, Cho SJ, Kim YH, Kim MJ, Ryu EY, Lee SJ., J. Biosci. Bioeng. 106(5), 2008
PMID: 19111647
SortMeRNA: fast and accurate filtering of ribosomal RNAs in metatranscriptomic data.
Kopylova E, Noe L, Touzet H., Bioinformatics 28(24), 2012
PMID: 23071270
The fate of nitrate in intertidal permeable sediments.
Marchant HK, Lavik G, Holtappels M, Kuypers MM., PLoS ONE 9(8), 2014
PMID: 25127459
Coupled nitrification–denitrification leads to extensive N loss in subtidal permeable sediments
AUTHOR UNKNOWN, 2016
Shallow breathing: bacterial life at low O2
AUTHOR UNKNOWN, 2013
Denitrification in sediment determined from nitrogen isotope pairing
AUTHOR UNKNOWN, 1992
Regulation of expression of terminal oxidases in Paracoccus denitrificans.
Otten MF, Stork DM, Reijnders WN, Westerhoff HV, Van Spanning RJ., Eur. J. Biochem. 268(8), 2001
PMID: 11298768
Denitrification under various aeration conditions in Comamonas sp. strain SGLY2
AUTHOR UNKNOWN, 1994
Aerobic denitrifiers isolated from diverse natural and managed ecosystems
AUTHOR UNKNOWN, 2000
Phytoplankton deposition to permeable sediments under oscillatory flow: effects of ripple geometry and resuspension
AUTHOR UNKNOWN, 2006
High spatial resolution measurement of oxygen consumption rates in permeable sediments
AUTHOR UNKNOWN, 2005
Redundancy of aerobic respiratory chains in bacteria? Routes, reasons and regulation
AUTHOR UNKNOWN, 2000
Respiration and denitrification in permeable continental shelf deposits on the South Atlantic Bight: N: Ar and isotope pairing measurements in sediment column experiments
AUTHOR UNKNOWN, 2008
A hydrographic time series station in the Wadden Sea (southern North Sea)
AUTHOR UNKNOWN, 2009

AUTHOR UNKNOWN, 2008
The influence of carbon substrate on the activity of the periplasmic nitrate reductase in aerobically grown Thiosphaera pantotropha
AUTHOR UNKNOWN, 1992
Aerobic denitrification--old wine in new bottles?
Robertson LA, Kuenen JG., Antonie Van Leeuwenhoek 50(5-6), 1984
PMID: 6397132
Confirmation of aerobic denitrification in batch cultures, using gas-chromatography and N15 mass spectrometry
AUTHOR UNKNOWN, 1995
Bacteria, diatoms and detritus in an intertidal sandflat subject to advective transport across the water-sediment interface
AUTHOR UNKNOWN, 2001
Giant hydrogen sulfide plume in the oxygen minimum zone off Peru supports chemolithoautotrophy.
Schunck H, Lavik G, Desai DK, Großkopf T, Kalvelage T, Loscher CR, Paulmier A, Contreras S, Siegel H, Holtappels M, Rosenstiel P, Schilhabel MB, Graco M, Schmitz RA, Kuypers MM, Laroche J., PLoS ONE 8(8), 2013
PMID: 23990875
Effect of carbon substrate and aeration on nitrate reduction and expression of the periplasmic and membrane-bound nitrate reductases in carbon-limited continuous cultures of Paracoccus denitrificans Pd1222
AUTHOR UNKNOWN, 1997
Extensive nitrogen loss from permeable sediments off North-West Africa
AUTHOR UNKNOWN, 2016
A bioinformatics classifier and database for heme-copper oxygen reductases.
Sousa FL, Alves RJ, Pereira-Leal JB, Teixeira M, Pereira MM., PLoS ONE 6(4), 2011
PMID: 21559461
Deep-sea hydrothermal vent Epsilonproteobacteria encode a conserved and widespread nitrate reduction pathway (Nap).
Vetriani C, Voordeckers JW, Crespo-Medina M, O'Brien CE, Giovannelli D, Lutz RA., ISME J 8(7), 2014
PMID: 24430487
The nitrite reductase gene of Pseudomonas aeruginosa: effect of growth conditions on the expression and construction of a mutant by gene disruption.
Zennaro E, Ciabatti I, Cutruzzola F, D'Alessandro R, Silvestrini MC., FEMS Microbiol. Lett. 109(2-3), 1993
PMID: 8339915
DNA recovery from soils of diverse composition.
Zhou J, Bruns MA, Tiedje JM., Appl. Environ. Microbiol. 62(2), 1996
PMID: 8593035
Cell biology and molecular basis of denitrification.
Zumft WG., Microbiol. Mol. Biol. Rev. 61(4), 1997
PMID: 9409151

Export

Markieren/ Markierung löschen
Markierte Publikationen

Open Data PUB

Web of Science

Dieser Datensatz im Web of Science®

Quellen

PMID: 28463234
PubMed | Europe PMC

Suchen in

Google Scholar